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The tmRDB and SRPDB...
The tmRDB and SRPDB resources.
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Sloth Andersen, Ebbe (författare)
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- Alm Rosenblad, Magnus, 1957 (författare)
- Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för medicinsk kemi och cellbiologi,Institute of Biomedicine, Department of Medical Biochemistry and Cell Biology
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Larsen, Niels (författare)
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Cairo Westergaard, Jesper (författare)
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Burks, Jody (författare)
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Wower, Iwona K (författare)
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Wower, Jacek (författare)
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Gorodkin, Jan (författare)
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- Samuelsson, Tore, 1951 (författare)
- Gothenburg University,Göteborgs universitet,Institutionen för biomedicin, avdelningen för medicinsk kemi och cellbiologi,Institute of Biomedicine, Department of Medical Biochemistry and Cell Biology
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Zwieb, Christian (författare)
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(creator_code:org_t)
- Oxford University Press (OUP), 2006
- 2006
- Engelska.
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Ingår i: Nucleic acids research. - : Oxford University Press (OUP). - 1362-4962 .- 0305-1048. ; 34:Database issue
- Relaterad länk:
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https://academic.oup...
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https://gup.ub.gu.se...
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https://doi.org/10.1...
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Abstract
Ämnesord
Stäng
- Maintained at the University of Texas Health Science Center at Tyler, Texas, the tmRNA database (tmRDB) is accessible at the URL http://psyche.uthct.edu/dbs/tmRDB/tmRDB.html with mirror sites located at Auburn University, Auburn, Alabama (http://www.ag.auburn.edu/mirror/tmRDB/) and the Royal Veterinary and Agricultural University, Denmark (http://tmrdb.kvl.dk/). The signal recognition particle database (SRPDB) at http://psyche.uthct.edu/dbs/SRPDB/SRPDB.html is mirrored at http://srpdb.kvl.dk/ and the University of Goteborg (http://bio.lundberg.gu.se/dbs/SRPDB/SRPDB.html). The databases assist in investigations of the tmRNP (a ribonucleoprotein complex which liberates stalled bacterial ribosomes) and the SRP (a particle which recognizes signal sequences and directs secretory proteins to cell membranes). The curated tmRNA and SRP RNA alignments consider base pairs supported by comparative sequence analysis. Also shown are alignments of the tmRNA-associated proteins SmpB, ribosomal protein S1, alanyl-tRNA synthetase and Elongation Factor Tu, as well as the SRP proteins SRP9, SRP14, SRP19, SRP21, SRP54 (Ffh), SRP68, SRP72, cpSRP43, Flhf, SRP receptor (alpha) and SRP receptor (beta). All alignments can be easily examined using a new exploratory browser. The databases provide links to high-resolution structures and serve as depositories for structures obtained by molecular modeling.
Nyckelord
- Amino Acid Sequence
- Base Sequence
- Databases
- Genetic
- Internet
- Peptides
- metabolism
- Phylogeny
- RNA
- Bacterial
- chemistry
- genetics
- metabolism
- Ribonucleoproteins
- chemistry
- genetics
- physiology
- Sequence Alignment
- Sequence Analysis
- RNA
- Signal Recognition Particle
- chemistry
- genetics
- physiology
- User-Computer Interface
Publikations- och innehållstyp
- ref (ämneskategori)
- art (ämneskategori)
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