Whole-genome analyses resolve early branches in the tree of life of modern birds

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Fältnamn	Indikatorer	Metadata
000		07768naa a2201705 4500
001		oai:DiVA.org:uu-241964
003		SwePub
008		150119s2014 \| \|\|\|\|\|\|\|\|\|\|\|000 \|\|eng\|
009		oai:slubar.slu.se:66558
024	7	a https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-2419642 URI
024	7	a https://doi.org/10.1126/science.12534512 DOI
024	7	a https://res.slu.se/id/publ/665582 URI
040		a (SwePub)uud (SwePub)slu
041		a engb eng
042		9 SwePub
072	7	a ref2 swepub-contenttype
072	7	a art2 swepub-publicationtype
100	1	a Jarvis, Erich D.4 aut
245	1 0	a Whole-genome analyses resolve early branches in the tree of life of modern birds
264	1	b American Association for the Advancement of Science (AAAS),c 2014
338		a print2 rdacarrier
520		a To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data. We recovered a highly resolved tree that confirms previously controversial sister or close relationships. We identified the first divergence in Neoaves, two groups we named Passerea and Columbea, representing independent lineages of diverse and convergently evolved land and water bird species. Among Passerea, we infer the common ancestor of core landbirds to have been an apex predator and confirm independent gains of vocal learning. Among Columbea, we identify pigeons and flamingoes as belonging to sister clades. Even with whole genomes, some of the earliest branches in Neoaves proved challenging to resolve, which was best explained by massive protein-coding sequence convergence and high levels of incomplete lineage sorting that occurred during a rapid radiation after the Cretaceous-Paleogene mass extinction event about 66 million years ago.
650	7	a NATURVETENSKAPx Biologix Evolutionsbiologi0 (SwePub)106152 hsv//swe
650	7	a NATURAL SCIENCESx Biological Sciencesx Evolutionary Biology0 (SwePub)106152 hsv//eng
650	7	a NATURVETENSKAPx Biologix Biologisk systematik0 (SwePub)106122 hsv//swe
650	7	a NATURAL SCIENCESx Biological Sciencesx Biological Systematics0 (SwePub)106122 hsv//eng
650	7	a NATURVETENSKAPx Biologix Ekologi0 (SwePub)106112 hsv//swe
650	7	a NATURAL SCIENCESx Biological Sciencesx Ecology0 (SwePub)106112 hsv//eng
650	7	a NATURVETENSKAPx Biologix Zoologi0 (SwePub)106082 hsv//swe
650	7	a NATURAL SCIENCESx Biological Sciencesx Zoology0 (SwePub)106082 hsv//eng
650	7	a NATURVETENSKAPx Biologix Bioinformatik och systembiologi0 (SwePub)106102 hsv//swe
650	7	a NATURAL SCIENCESx Biological Sciencesx Bioinformatics and Systems Biology0 (SwePub)106102 hsv//eng
650	7	a NATURVETENSKAPx Biologix Genetik0 (SwePub)106092 hsv//swe
650	7	a NATURAL SCIENCESx Biological Sciencesx Genetics0 (SwePub)106092 hsv//eng
700	1	a Mirarab, Siavash4 aut
700	1	a Aberer, Andre J.4 aut
700	1	a Li, Bo4 aut
700	1	a Houde, Peter4 aut
700	1	a Li, Cai4 aut
700	1	a Ho, Simon Y. W.4 aut
700	1	a Faircloth, Brant C.4 aut
700	1	a Nabholz, Benoit4 aut
700	1	a Howard, Jason T.4 aut
700	1	a Suh, Alexanderu Uppsala universitet,Evolutionsbiologi4 aut0 (Swepub:uu)alesu519
700	1	a Weber, Claudia C.u Uppsala universitet,Evolutionsbiologi4 aut0 (Swepub:uu)clawe467
700	1	a da Fonseca, Rute R.4 aut
700	1	a Li, Jianwen4 aut
700	1	a Zhang, Fang4 aut
700	1	a Li, Hui4 aut
700	1	a Zhou, Long4 aut
700	1	a Narula, Nitish4 aut
700	1	a Liu, Liang4 aut
700	1	a Ganapathy, Ganesh4 aut
700	1	a Boussau, Bastien4 aut
700	1	a Bayzid, Md. Shamsuzzoha4 aut
700	1	a Zavidovych, Volodymyr4 aut
700	1	a Subramanian, Sankar4 aut
700	1	a Gabaldon, Toni4 aut
700	1	a Capella-Gutierrez, Salvador4 aut
700	1	a Huerta-Cepas, Jaime4 aut
700	1	a Rekepalli, Bhanu4 aut
700	1	a Munch, Kasper4 aut
700	1	a Schierup, Mikkel4 aut
700	1	a Lindow, Bent4 aut
700	1	a Warren, Wesley C.4 aut
700	1	a Ray, David4 aut
700	1	a Green, Richard E.4 aut
700	1	a Bruford, Michael W.4 aut
700	1	a Zhan, Xiangjiang4 aut
700	1	a Dixon, Andrew4 aut
700	1	a Li, Shengbin4 aut
700	1	a Li, Ning4 aut
700	1	a Huang, Yinhua4 aut
700	1	a Derryberry, Elizabeth P.4 aut
700	1	a Bertelsen, Mads Frost4 aut
700	1	a Sheldon, Frederick H.4 aut
700	1	a Brumfield, Robb T.4 aut
700	1	a Mello, Claudio V.4 aut
700	1	a Lovell, Peter V.4 aut
700	1	a Wirthlin, Morgan4 aut
700	1	a Cruz Schneider, Maria Paula4 aut
700	1	a Prosdocimi, Francisco4 aut
700	1	a Samaniego, Jose Alfredo4 aut
700	1	a Vargas Velazquez, Amhed Missael4 aut
700	1	a Alfaro-Nunez, Alonzo4 aut
700	1	a Campos, Paula F.4 aut
700	1	a Petersen, Bent4 aut
700	1	a Sicheritz-Ponten, Thomas4 aut
700	1	a Pas, An4 aut
700	1	a Bailey, Tom4 aut
700	1	a Scofield, Paul4 aut
700	1	a Bunce, Michael4 aut
700	1	a Lambert, David M.4 aut
700	1	a Zhou, Qi4 aut
700	1	a Perelman, Polina4 aut
700	1	a Driskell, Amy C.4 aut
700	1	a Shapiro, Beth4 aut
700	1	a Xiong, Zijun4 aut
700	1	a Zeng, Yongli4 aut
700	1	a Liu, Shiping4 aut
700	1	a Li, Zhenyu4 aut
700	1	a Liu, Binghang4 aut
700	1	a Wu, Kui4 aut
700	1	a Xiao, Jin4 aut
700	1	a Yinqi, Xiong4 aut
700	1	a Zheng, Qiuemei4 aut
700	1	a Zhang, Yong4 aut
700	1	a Yang, Huanming4 aut
700	1	a Wang, Jian4 aut
700	1	a Smeds, Linneau Uppsala universitet,Evolutionsbiologi4 aut0 (Swepub:uu)linsm456
700	1	a Rheindt, Frank E.4 aut
700	1	a Braun, Michael4 aut
700	1	a Fjeldsa, Jon4 aut
700	1	a Orlando, Ludovic4 aut
700	1	a Barker, F. Keith4 aut
700	1	a Jonsson, Knud Andreas4 aut
700	1	a Johnson, Warren4 aut
700	1	a Koepfli, Klaus-Peter4 aut
700	1	a O'Brien, Stephen4 aut
700	1	a Haussler, David4 aut
700	1	a Ryder, Oliver A.4 aut
700	1	a Rahbek, Carsten4 aut
700	1	a Willerslev, Eske4 aut
700	1	a Graves, Gary R.4 aut
700	1	a Glenn, Travis C.4 aut
700	1	a McCormack, John4 aut
700	1	a Burt, Dave4 aut
700	1	a Ellegren, Hansu Uppsala universitet,Evolutionsbiologi4 aut0 (Swepub:uu)hanselle
700	1	a Alström, Peru Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,ARTDATABANKEN,Swedish Species Information Centre,Chinese Academy of Sciences4 aut0 (Swepub:slu)48106
700	1	a Edwards, Scott V.4 aut
700	1	a Stamatakis, Alexandros4 aut
700	1	a Mindell, David P.4 aut
700	1	a Cracraft, Joel4 aut
700	1	a Braun, Edward L.4 aut
700	1	a Warnow, Tandy4 aut
700	1	a Jun, Wang4 aut
700	1	a Gilbert, M. Thomas P.4 aut
700	1	a Zhang, Guojie4 aut
710	2	a Uppsala universitetb Evolutionsbiologi4 org
710	2	a Sveriges lantbruksuniversitet
773	0	t Scienced : American Association for the Advancement of Science (AAAS)g 346:6215, s. 1320-1331q 346:6215<1320-1331x 0036-8075x 1095-9203
856	4	u https://research-repository.griffith.edu.au/bitstream/10072/67425/1/SankarasubramanianPUB2.pdf
856	4 8	u https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-241964
856	4 8	u https://doi.org/10.1126/science.1253451
856	4 8	u https://res.slu.se/id/publ/66558

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Av författaren/redakt...: Jarvis, Erich D.; Mirarab, Siavash; Aberer, Andre J.; Li, Bo; Houde, Peter; Li, Cai; visa fler...; Ho, Simon Y. W.; Faircloth, Brant ...; Nabholz, Benoit; Howard, Jason T.; Suh, Alexander; Weber, Claudia C ...; da Fonseca, Rute ...; Li, Jianwen; Zhang, Fang; Li, Hui; Zhou, Long; Narula, Nitish; Liu, Liang; Ganapathy, Ganes ...; Boussau, Bastien; Bayzid, Md. Sham ...; Zavidovych, Volo ...; Subramanian, San ...; Gabaldon, Toni; Capella-Gutierre ...; Huerta-Cepas, Ja ...; Rekepalli, Bhanu; Munch, Kasper; Schierup, Mikkel; Lindow, Bent; Warren, Wesley C ...; Ray, David; Green, Richard E ...; Bruford, Michael ...; Zhan, Xiangjiang; Dixon, Andrew; Li, Shengbin; Li, Ning; Huang, Yinhua; Derryberry, Eliz ...; Bertelsen, Mads ...; Sheldon, Frederi ...; Brumfield, Robb ...; Mello, Claudio V ...; Lovell, Peter V.; Wirthlin, Morgan; Cruz Schneider, ...; Prosdocimi, Fran ...; Samaniego, Jose ...; Vargas Velazquez ...; Alfaro-Nunez, Al ...; Campos, Paula F.; Petersen, Bent; Sicheritz-Ponten ...; Pas, An; Bailey, Tom; Scofield, Paul; Bunce, Michael; Lambert, David M ...; Zhou, Qi; Perelman, Polina; Driskell, Amy C.; Shapiro, Beth; Xiong, Zijun; Zeng, Yongli; Liu, Shiping; Li, Zhenyu; Liu, Binghang; Wu, Kui; Xiao, Jin; Yinqi, Xiong; Zheng, Qiuemei; Zhang, Yong; Yang, Huanming; Wang, Jian; Smeds, Linnea; Rheindt, Frank E ...; Braun, Michael; Fjeldsa, Jon; Orlando, Ludovic; Barker, F. Keith; Jonsson, Knud An ...; Johnson, Warren; Koepfli, Klaus-P ...; O'Brien, Stephen; Haussler, David; Ryder, Oliver A.; Rahbek, Carsten; Willerslev, Eske; Graves, Gary R.; Glenn, Travis C.; McCormack, John; Burt, Dave; Ellegren, Hans; Alström, Per; Edwards, Scott V ...; Stamatakis, Alex ...; Mindell, David P ...; Cracraft, Joel; Braun, Edward L.; Warnow, Tandy; Jun, Wang; Gilbert, M. Thom ...; Zhang, Guojie; visa färre...

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