| 1. |
- Agback, Peter, et al.
(författare)
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Structural characterization and biological function of bivalent binding of CD2AP to intrinsically disordered domain of chikungunya virus nsP3 protein
- 2019
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Ingår i: Virology. - : Elsevier BV. - 0042-6822 .- 1178-122X. ; 537, s. 130-142
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Tidskriftsartikel (refereegranskat)abstract
- Alphavirus nsP3 proteins contain long, intrinsically disordered, hypervariable domains, HVD, which serve as hubs for interaction with many cellular proteins. Here, we have deciphered the mechanism and function of HVD interaction with host factors in alphavirus replication. Using NMR spectroscopy, we show that CHIKV HVD contains two SH3 domain-binding sites. Using an innovative chemical shift perturbation signature approach, we demonstrate that CD2AP interaction with HVD is mediated by its SH3-A and SH3–C domains, and this leaves the SH3–B domain available for interaction with other cellular factor(s). This cooperative interaction with two SH3 domains increases binding affinity to CD2AP and possibly induces long-range allosteric effects in HVD. Our data demonstrate that BIN1, CD2AP and SH3KBP1 play redundant roles in initiation of CHIKV replication. Point mutations in both CHIKV HVD binding sites abolish its interaction with all three proteins, CD2AP, BIN1 and SH3KBP1. This results in strong inhibition of viral replication initiation. © 2019 Elsevier Inc.
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| 2. |
- Gavier-Widén, Dolores
(författare)
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Molecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV)
- 2014
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Ingår i: Virology. - : Elsevier BV. - 0042-6822 .- 1178-122X. ; 468, s. 104-112
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Tidskriftsartikel (refereegranskat)abstract
- European brown hare syndrome virus (EBHSV) is the aetiological agent of European brown hare syndrome (EBHS), a disease affecting Lepus europaeus and Lepus timidus first diagnosed in Sweden in 1980. To characterize EBHSV evolution we studied hare samples collected in Sweden between 1982 and 2008. Our molecular clock dating is compatible with EBHSV emergence in the 1970s. Phylogenetic analysis revealed two lineages: Group A persisted until 1989 when it apparently suffered extinction; Group B emerged in the mid-1980s and contains the most recent strains. Antigenic differences exist between groups, with loss of reactivity of some MAbs over time, which are associated with amino acid substitutions in recognized epitopes. A role for immune selection is also supported by the presence of positively selected codons in exposed regions of the capsid. Hence, EBHSV evolution is characterized by replacement of Group A by Group B viruses, suggesting that the latter possess a selective advantage. (C) 2014 Elsevier Inc. All rights reserved.
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| 3. |
- Hayer, Juliette, et al.
(författare)
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Four novel picornaviruses detected in Magellanic Penguins (Spheniscus magellanicus) in Chile
- 2021
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Ingår i: Virology. - : Elsevier BV. - 0042-6822 .- 1178-122X. ; 560, s. 116-123
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Tidskriftsartikel (refereegranskat)abstract
- Members of the Picornaviridae family comprise a significant burden on the poultry industry, causing diseases such as gastroenteritis and hepatitis. However, with the advent of metagenomics, a number of picornaviruses have now been revealed in apparently healthy wild birds. In this study, we identified four novel viruses belonging to the family Picornaviridae in healthy Magellanic penguins, a near threatened species. All samples were subsequently screened by RT-PCR for these new viruses, and approximately 20% of the penguins were infected with at least one of these viruses. The viruses were distantly related to members of the genera Hepatovirus, Tremovirus, Gruhelivirus and Crahelvirus. Further, they had more than 60% amino acid divergence from other picornaviruses, and therefore likely constitute novel genera. Our results demonstrate the vast undersampling of wild birds for viruses, and we expect the discovery of numerous avian viruses that are related to hepatoviruses and tremoviruses in the future.
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| 4. |
- Kalyandurg, Pruthvi Balachandra, et al.
(författare)
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Efficient RNA silencing suppression activity of Potato Mop-Top Virus 8K protein is driven by variability and positive selection
- 2019
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Ingår i: Virology. - : Elsevier BV. - 0042-6822 .- 1178-122X. ; 535, s. 111-121
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Tidskriftsartikel (refereegranskat)abstract
- Previously, we investigated the evolution of Potato mop-top virus (PMTV) ORFs. Results indicate that positive selection acts exclusively on an ORF encoding the 8K protein, a weak viral suppressor of RNA silencing (VSR). However, how the extraordinary variability contributes to 8K-mediated RNA silencing suppression remains unknown. Here, we characterized the RNA silencing suppression activity of the 8K protein from seven diverse isolates. We show that 8K encoded by isolate P1 exhibits stronger RNA silencing suppression activity than the 8K protein from six other isolates. Mutational analyses revealed that Ser-50 is critical for these differences. By comparing small RNA profiles we found a lower abundance of siRNAs with U residue at the 5'-terminus after expression of the P1 8K compared to expression of 8K from isolate P125, an isolate with weak VSR activity. These results provide new clues as to the role of positive selection in shaping activities of VSRs.
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| 5. |
- Kreuze, Jan
(författare)
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Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses
- 2009
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Ingår i: Virology. - : Elsevier BV. - 0042-6822 .- 1178-122X. ; 388, s. 1-7
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Tidskriftsartikel (refereegranskat)abstract
- We report the first identification of novel viruses, and sequence of an entire vital genome, by a single step of high-throughput parallel sequencing of small RNAs from diseased, as well as symptomless plants. Contigs were assembled from sequenced total siRNA from plants using small sequence assembly software and could positively identify RNA, ssDNA and dsDNA reverse transcribing viruses and in one case spanned the entire genome. The results present a novel approach which cannot only identify known vital pathogens, Occurring at extremely low titers, but also novel viruses, without the necessity of any prior knowledge. (C) 2009 Elsevier Inc. All rights reserved.
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| 6. |
- Liu, Lihong, et al.
(författare)
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Phylogeny, classification and evolutionary insights into pestiviruses
- 2009
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Ingår i: Virology. - : Elsevier BV. - 0042-6822 .- 1178-122X. ; 385, s. 351-357
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Tidskriftsartikel (refereegranskat)abstract
- The genus Pestivirus comprises four established species: Bovine viral diarrhoea viruses 1 (BVDV-1) and 2 (BVDV-2), Border disease virus (BDV), and Classical swine fever virus (CSFV); and a tentative species, Pestivirus of giraffe. Additional pestiviruses have been identified and suggested for recognition as novel subgroups/species. To achieve a reliable phylogeny as the basis for classification of pestiviruses, a molecular dataset of 56 pestiviruses and 2089 characters, comprising the 5'UTR, complete N(pro) and E2 gene regions was analysed by Maximum likelihood and Bayesian approach. An identical, robust tree topology was inferred, where seven well-supported monophyletic clades and two highly divergent lineages were identified. Dating most recent common ancestor was estimated for major pestivirus lineages and their evolutionary histories were revealed. Accordingly, a new proposal is presented for the classification of pestiviruses into nine species: BVDV-1, BVDV-2, BVDV-3 (atypical bovine pestiviruses), Pestivirus of giraffe, CSFV, BDV, Tunisian sheep Virus (TSV; previously termed "Tunisian isolates"), Antelope and Bungowannah. (c) 2008 Elsevier Inc. All rights reserved.
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| 7. |
- Rodrigues De Miranda, Joachim, et al.
(författare)
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Studies on the transmission and tissue distribution of Antheraea pernyi iflavirus in the Chinese oak silkmoth Antheraea pernyi
- 2017
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Ingår i: Virology. - : Elsevier BV. - 0042-6822 .- 1178-122X. ; 502, s. 171-175
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Tidskriftsartikel (refereegranskat)abstract
- Antheraea pernyi Iflavirus (ApIV) is a virus that is the likely causative agent of A. pernyi Vomit Disease (AVD). The virus is maintained in A. pernyi populations as an unapparent infection by as yet unknown transmission routes. The mechanisms by which an infection results in AVD are also not yet known. Both these factors were investigated in this study. A. pernyi larvae were fed or injected with ApIV, but only injection led to active replication and spread of ApIV to the head, epidermis, hemocytes, gut, fatbody, ovary and testis. Twenty percent of ApIV-injected pupae produced ApIV-infected offspring as adults, proving that ApIV can be transmitted vertically. As a confirmation of vertical transmission occurring also in nature, 53 A. pernyi couples were collected from areas where ApIV has been detected. Eleven of these couples produced ApIV-infected offspring, again pointing to a vertical transmission of ApIV.
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| 8. |
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| 9. |
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| 10. |
- Drobni, Peter, et al.
(författare)
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Carboxy-fluorescein diacetate, succinimidyl ester labeled papillomavirus virus-like particles fluoresce after internalization and interact with heparan sulfate for binding and entry
- 2003
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Ingår i: Virology. - 0042-6822 .- 1096-0341. ; 310:1, s. 163-172
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Tidskriftsartikel (refereegranskat)abstract
- Human papillomaviruses (HPVs) infect epithelial cells and are associated with genital carcinoma. Most epithelial cell lines express cell-surface glycosaminoglycans (GAGs) usually found attached to the protein core of proteoglycans. Our aim was to study how GAGs influenced HPV entry. Using a human keratinocyte cell line (HaCaT), preincubation of HPV virus-like particles (VLPs) with GAGs showed a dose-dependent inhibition of binding. The IC(50) (50% inhibition) was only 0.5 microg/ml for heparin, 1 microg/ml for dextran sulfate, and 5-10 microg/ml for heparan sulfate from mucosal origin. Mutated chinese hamster ovary (CHO) cell lines lacking heparan sulfate or all GAGs were unable to bind HPV VLPs. Here we also report a method to study internalization by using VLPs labeled with carboxy-fluorescein diacetate, succinimidyl ester, a fluorochrome that is only activated after cell entry. Pretreatment of labeled HPV VLPs with heparin inhibited uptake, suggesting a primary interaction between HPV and cell-surface heparan sulfate.
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