| 1. |
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| 2. |
- Andersson, Eva, et al.
(författare)
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Net autotrophy in an oligotrophic lake rich in dissolved organic carbon and with high benthic primary production
- 2006
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Ingår i: Aquatic Microbial Ecology. - : Inter-Research Science Center. - 0948-3055 .- 1616-1564. ; 43:1, s. 1-10
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Tidskriftsartikel (refereegranskat)abstract
- Biomass and production of microbiota—primary producers as well as heterotrophic bacteria—were studied both in the pelagial and in the benthic habitat over 2 yr in the shallow oligotrophic Lake Eckarfjärden, Sweden. Both biomass and production of microbiota were concentrated in the benthic habitat. Despite a high dissolved organic carbon (DOC) concentration of about 25 mg C l–1 in the water, the total bacterial production was lower than the total primary production. Moreover, measurements of DOC concentrations in the in- and outflow, and CO2-saturation measurements, indicate that the system is net autotrophic. Generally, low-productive systems (<100 µg C l–1 d–1) tend to be net heterotrophic. In contrast, we found a low-productive (55 µg C l–1 d–1) but net autotrophic system, the conditions of which were largely influenced by benthic production. Many lakes in the world are shallow and may provide substantial benthic areas suitable for primary production. Hence, it is important to include this habitat when evaluating whether lakes are autotrophic or heterotrophic systems.
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| 3. |
- Andersson, Martin G. I., et al.
(författare)
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Effects of sterilization on dissolved organic carbon (DOC) composition and bacterial utilization of DOC from lakes
- 2018
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Ingår i: Aquatic Microbial Ecology. - : Inter-Research Science Center. - 0948-3055 .- 1616-1564. ; 82:2, s. 199-208
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Tidskriftsartikel (refereegranskat)abstract
- Sterilization of dissolved organic carbon (DOC) is an essential step in research on interactions between DOC and organisms, for example where the effect of different microbial communities on DOC is studied or vice versa. However, few studies have gone beyond acknowledging that sterilization of DOC influences its characteristics. Here, we aimed to provide further knowledge that enables scientists to better tailor their sterilization methods to their research question. To meet this aim, we conducted a sterilization experiment with DOC from 4 boreal lakes treated with 4 sterilization methods, i.e. 2 filtrations (0.2 µm, 0.1 µm) and 2 autoclaving approaches (single and double autoclaving with a single pH adjustment). Quantity and spectroscopic properties of DOC, before and after sterilization, were studied, and DOC was further tested as a substrate for bacterial growth. We found that the filtration methods better preserved the different DOC measures. In contrast, autoclaving caused major inconsistent shifts in both qualitative and quantitative measures of DOC, as well as an increase of the maximum abundance of bacteria in growth experiments. Nonetheless, there remains a trade-off between retaining the quality of DOC and achieving sterile conditions. Therefore, the sterilization method of choice should be guided by the scientific question at hand.
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| 4. |
- Baltar, Federico, et al.
(författare)
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High dissolved extracellular enzymatic activity in the deep Central Atlantic Ocean
- 2010
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Ingår i: Aquatic Microbial Ecology. - : Inter-Research Science Center. - 0948-3055 .- 1616-1564. ; 58:3, s. 287-302
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Tidskriftsartikel (refereegranskat)abstract
- The distribution of prokaryotic abundance (PA), prokaryotic heterotrophic production (PHP), and suspended particulate organic material (POM), as well as total and dissolved (operationally defined as passing through 0.2 mu m pore size filters) potential extracellular enzymatic activities (EEA; alpha- and beta-glucosidase [AGase and BGase], leucine aminopeptidase [LAPase], and alkaline phosphatase [APase]) were determined in the meso- and bathypelagic waters of the (sub)tropical Atlantic along an eastern zonal transatlantic transect and a western N-S transect. Significant differences between both transects were found for POM concentration but not for PA, PHP (except in the subsurface and oxygen minimum layer), and dissolved and total EEA. PHP decreased by 3 orders of magnitude from the lower euphotic zone to bathypelagic waters, while PA and cell-specific PHP decreased only by 1 and 2 orders of magnitude, respectively. The proportion of the dissolved to the total EEA was high in the dark ocean for all the enzymes, ranging from 54 to 100, 56 to 100, 65 to 100 and 57 to 97 % for AGase, BGase, LAPase and APase, respectively. The kinetic parameters (V-max, and K-m) of both the dissolved and total fractions of LAPase and APase were very similar throughout the water column, suggesting a similar origin for both dissolved and particulate EEA. Significant correlations of both dissolved and total EEA were found with prokaryotic metabolism and the POM pool. Based on the previous notion that the fraction of dissolved EEA is higher in particle-attached than in free-living microbes, our results suggest that microbial activity in the dark ocean occurs mainly on colloidal and particulate material. This is in agreement with recent genomic evidence. However, these colloidal and particulate materials are prone to disruption during the sampling process. Hence, more selective sampling techniques are needed to specifically collect these deep-water aggregates that probably represent hotspots of microbial activity in the deep ocean.
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| 5. |
- Baltar, Federico, et al.
(författare)
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Prokaryotic carbon utilization in the dark ocean: : growth efficiency, leucine-to-carbon conversion factors, and their relation
- 2010
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Ingår i: Aquatic Microbial Ecology. - : Inter-Research Science Center. - 0948-3055 .- 1616-1564. ; 60:3, s. 227-232
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Tidskriftsartikel (refereegranskat)abstract
- Experiments were conducted in the mesopelagic subtropical northeast Atlantic Ocean to determine the range of variability in the prokaryotic leucine-to-carbon conversion factor (CF), and prokaryotic growth efficiency (PGE). The way prokaryotic heterotrophic production (PHP) is calcu- lated directly influences PGE (variations of PGE between 1 and 31% were found for a single sample). The empirically obtained deep-water CFs showed a 7-fold variability (0.13 to 0.85 kg C mol–1 Leu), but were always lower than the theoretical CF of 1.55 kg C mol–1 Leu assuming no isotope dilution. Empirically determined CFs were highly correlated to PGE, suggesting that both parameters are rep- resentations of the same basic metabolic processes. Overall, the PGEs obtained in this study suggest that mesopelagic prokaryotic assemblages can sometimes be as important in carbon processing as their epipelagic counterparts.
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| 6. |
- Baltar, Federico, et al.
(författare)
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Strong coast-ocean and surface-depth gradients in prokaryotic assemblage structure and activity in a coastal transition zone region
- 2007
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Ingår i: Aquatic Microbial Ecology. - : Inter-Research Science Center. - 0948-3055 .- 1616-1564. ; 50:1, s. 63-74
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Tidskriftsartikel (refereegranskat)abstract
- The distribution of marine Crenarchaeota Group 1, marine Euryarchaeota Group II and some major groups of Bacteria (SAR 11, Roseobacter, Gammaproteobacteria and Bacteroidetes) was investigated in the North Atlantic water column (surface to 2000 m depth) along a transect from the coastal waters of the NW African upwelling to the offshore waters of the Canary Coastal Transition Zone (CTZ). Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH) was used to describe the prokaryotic assemblages. Bulk picoplankton abundance and leucine incorporation were determined. Pronounced changes in prokaryotic assemblage composition were observed from the coast to the open ocean and at the deep chlorophyll maximum (DCM) with decreasing bulk heterotrophic activity. All bacterial groups decreased in absolute abundances from the coast to the open ocean; both archaeal groups increased towards the open ocean. Prokaryotic abundance and activity decreased 2 and 3 orders of magnitude, respectively, from the surface to 2000 m. Prokaryotic growth rates were high in the mesopelagic zone (similar to 0.13 d(-)1), compared to other reports from the central North Atlantic. SARI 1 in total picoplankton abundance decreased from 42 % in the DCM to 4 % at 2000 m, while marine Crenarchaeota Group I increased from 1 % in the DCM to 39 % in the oxygen minimum layer. A clear influence of the different intermediate water masses was observed on the bulk heterotrophic picoplankton activity, with lower leucine incorporation rates corresponding to layers where patches of Antarctic Intermediate Water were detected. Coast-ocean and surface-depth gradients in bulk prokaryotic abundance and production and assemblage composition were comparable to changes observed in basin-scale studies, pinpointing the CTZs as regions of strong variability in microbial diversity and metabolism.
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| 7. |
- Barreiro, A, et al.
(författare)
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Relative importance of the different negative effects of the toxic haptophyte Prymnesium parvum on Rhodomonas salina and Brachionus plicatilis
- 2005
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Ingår i: Aquatic Microbial Ecology. - : Inter-Research Science Center. - 0948-3055 .- 1616-1564. ; 38:3, s. 259-267
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Tidskriftsartikel (refereegranskat)abstract
- The aim of this study was to determine the relative importance of the different processes/mechanisms by which the toxic haptophyte Prymnesium parvum, cultured under different nutrient conditions, affects non-toxic phytoplankton competitors and microzooplankton grazers. P. parvum was cultured under steady-state growth in different nutrient conditions: nitrogen depleted (-N), phosphorus depleted (-P) and balanced nitrogen and phosphorus (+NP). Cells from each nutrient condition and culture cell-free filtrates, alone and combined with non-toxic prey (Rhodomonas salina), were used as food for the rotifer Brachionus plicatilis. An additional experiment was carried out to test the effect of P. parvum cells and culture cell-free filtrate on R. salina. The highest haemolytic activity values were achieved by -P F parvum cultures, followed by -N. However, the negative effect of R parvum on R. salina and rotifers did not correlate with haemolytic activity but with the number of P. parvum cells. -N-cultured P. parvum were the most toxic for both R. salina and rotifers, followed by +NP. Therefore, haemolytic activity is not a good indicator of the total potential toxicity of R parvum. The growth rate of R. salina was negatively affected by cell-free filtrates but the effect of P, parvum predation was greater. Rotifers fed on both toxic and non-toxic algae, indicating that they did not select against the toxic alga. The P. parvum cell-free filtrate had an effect on B. plicatilis, although this was weak, B, plicatilis was also indirectly affected by P. parvum due to the negative effects of the toxic alga on their prey (R. salina). However, the greatest negative effect of P. parvum on the rotifers was due to ingestion of the toxic cells. Therefore, the phytoplankton competitor R. salina is more affected by P. parvum predation and the grazer B. plicatilis is more affected by ingestion of the toxic cells, the effects of excreted compounds being secondary.
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| 8. |
- Bastviken, David, 1971-, et al.
(författare)
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Similar bacterial growth on dissolved organic matter in anoxic and oxic lake water
- 2001
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Ingår i: Aquatic Microbial Ecology. - : Inter-Research Science Center. - 0948-3055 .- 1616-1564. ; 24:1, s. 41-49
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Tidskriftsartikel (refereegranskat)abstract
- Anoxic metabolism yields less energy per unit substrate utilized than oxic respiration. In addition, substrate availability is believed to be reduced under anoxic conditions since oxygenases cannot be used. Consequently, it is generally assumed that bacteria grow slower in anoxic environments than in oxic environments. The results of the present study challenge this view. We compared the growth of bacterial assemblages under carbon-limited conditions in lake water under anoxic and oxic conditions. Bioassay experiments were performed with water from 3 lakes differin9 in nutrient concentrations and organic matter content. Amon9 bacteria usin9 the same source of organic matter, median anoxic growth rates were 84 to 110% of oxic growth rates. The total biomass yield durin9 the experiments did not differ between anoxic and oxic treatments. We suggest that anoxic bacterial growth was regulated by substrate availability rather than by metabolic energy yield and that availability of organic matter under anoxic conditions was equal to or even greater than that in oxic treatments. This implies that anoxic decomposition rates may actually have been faster than oxic rates.
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| 9. |
- Bergfur, Jenny, et al.
(författare)
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Leaf-litter-associated fungi and bacteria along temporal and environmental gradients in boreal streams
- 2014
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Ingår i: Aquatic Microbial Ecology. - : Inter Research. - 0948-3055 .- 1616-1564. ; 73:3, s. 225-234
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Tidskriftsartikel (refereegranskat)abstract
- Aquatic fungi and bacteria have long been recognized as key drivers in ecosystem processes such as leaf litter decomposition. We examined fungal and bacterial communities on decaying alder Alnus glutinosa (L.) Gaertner leaves along a gradient of increasing agricultural land use and associated nutrient enrichment in 9 boreal streams during 4 separate seasons (fall 2003, spring 2005, fall 2005, and spring 2006). Denaturing gradient gel electrophoresis (DGGE) and quantitative polymerase chain reactions (qPCR) showed that agricultural land use had significant effects on both bacterial and fungal communities, and on the ratios of fungi to total microbes associated with decomposing leaf litter. Furthermore, landscape factors and fluvial geomorphology appeared to influence the community composition of fungi and bacteria. Seasonal effects were found for fungal community structure only, indicating a higher temperature sensitivity of fungi compared to bacteria.
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| 10. |
- Berglund, Johnny, et al.
(författare)
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Use of group-specific PCR primers for identification of chrysophytes by denaturing gradient gel electrophoresis
- 2005
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Ingår i: Aquatic Microbial Ecology. - Olendorf/Luhe : Inter-Research. - 0948-3055 .- 1616-1564. ; 39:2, s. 171-182
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Tidskriftsartikel (refereegranskat)abstract
- The chrysophytes Chrysophyceae and Synurophyceae are ecologically important groups of autotrophic, mixotrophic and heterotrophic flagellates. The smallest forms are difficult to identify by classical microscopy but have important functions both as primary producers and as consumers of bacteria in the aquatic food chain. Group-specific primers for amplification of the 18S small sub-unit rRNA gene were developed for analysis of chrysophyte diversity by denaturing gradient gel electrophoresis (DGGE). Two different primer pairs were tested. The first primer pair (EukC1-F–Chryso-R) primarily targeted Paraphysomonadaceae and Ochromonadales, which generally have heterotrophic or mixotrophic nutrition. The second primer pair (EukC2-F–Chryso-R) targeted both Chrysophyceae and Synurophyceae. The primer pairs were tested for PCR amplification of the 18S rRNA gene of 25 cultured chrysophyte species and 6 other closely related nanoplanktonic species. Both primer pairs performed well, since PCR products were obtained for the corresponding chrysophyte cultures. None of the non-chrysophyte species were amplified with these primers. PCR products of chrysophyte cultures could be separated by DGGE in a denaturing gradient from 40 to 60%. In order to test this PCR-DGGE system for natural planktonic systems, we used field samples from a brackish water area (Baltic Sea) and a freshwater lake. The most intense DGGE bands were excised, sequenced and compared to sequences in GenBank. All obtained sequences grouped within the chrysophytes. Thus, the method seems to be promising for examining chrysophyte diversity in planktonic systems.
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