| 1. |
- Adami, C., et al.
(författare)
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Evolution and stability of altruist strategies in microbial games
- 2012
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Ingår i: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. - 1539-3755 .- 1550-2376. ; 85:1
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Tidskriftsartikel (refereegranskat)abstract
- When microbes compete for limited resources, they often engage in chemical warfare using bacterial toxins. This competition can be understood in terms of evolutionary game theory (EGT). We study the predictions of EGT for the bacterial "suicide bomber" game in terms of the phase portraits of population dynamics, for parameter combinations that cover all interesting games for two-players, and seven of the 38 possible phase portraits of the three-player game. We compare these predictions to simulations of these competitions in finite well-mixed populations, but also allowing for probabilistic rather than pure strategies, as well as Darwinian adaptation over tens of thousands of generations. We find that Darwinian evolution of probabilistic strategies stabilizes games of the rock-paper-scissors type that emerge for parameters describing realistic bacterial populations, and point to ways in which the population fixed point can be selected by changing those parameters. © 2012 American Physical Society.
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| 2. |
- Akkerman, Vyacheslav, et al.
(författare)
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Self-similar accelerative propagation of expanding wrinkled flames and explosion triggering
- 2011
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Ingår i: Physical Review E, Statistical, nonlinear and soft matter physics. - : American Physical Society. - 1539-3755 .- 1550-2376. ; 83, s. 026305-
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Tidskriftsartikel (refereegranskat)abstract
- The formulation of Taylor on the self-similar propagation of an expanding spherical piston with constant velocity was extended to an instability-wrinkled deflagration front undergoing acceleration with RF∝tα, where RF is the instantaneous flame radius, t the time, and α a constant exponent. The formulation describes radial compression waves pushed by the front, trajectories of gas particles, and the explosion condition in the gas upstream of the front. The instant and position of explosion are determined for a given reaction mechanism. For a step-function induction time, analytic formulas for the explosion time and position are derived, showing their dependence on the reaction and flow parameters including thermal expansion, specific heat ratio, and acceleration of the front.
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| 3. |
- Al-Naseri, Haidar, et al.
(författare)
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Kinetic theory for spin-1/2 particles in ultrastrong magnetic fields
- 2020
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Ingår i: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. - : American Physical Society. - 1539-3755 .- 1550-2376. ; 102:4
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Tidskriftsartikel (refereegranskat)abstract
- When the Zecman energy approaches the characteristic kinetic energy of electrons, Landau quantization becomes important. In the vicinity of magnetars, the Zeeman energy can even be relativistic. We start from the Dirac equation and derive a kinetic equation for electrons, focusing on the phenomenon of Landau quantization in such ultrastrong but constant magnetic fields, neglecting short-scale quantum phenomena. It turns out that the usual relativistic gamma factor of the Vlasov equation is replaced by an energy operator, depending on the spin state, and also containing momentum derivatives. Furthermore, we show that the energy eigenstates in a magnetic field can be computed as eigenfunctions of this operator. The dispersion relation for electrostatic waves in a plasma is computed, and the significance of our results is discussed.
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| 4. |
- Albernaz, Daniel, et al.
(författare)
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Multirelaxation-time lattice Boltzmann model for droplet heating and evaporation under forced convection
- 2015
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Ingår i: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. - 1539-3755 .- 1550-2376. ; 91:4
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Tidskriftsartikel (refereegranskat)abstract
- We investigate the evaporation of a droplet surrounded by superheated vapor with relative motion between phases. The evaporating droplet is a challenging process, as one must take into account the transport of mass, momentum, and heat. Here a lattice Boltzmann method is employed where phase change is controlled by a nonideal equation of state. First, numerical simulations are compared to the D-2 law for a vaporizing static droplet and good agreement is observed. Results are then presented for a droplet in a Lagrangian frame under a superheated vapor flow. Evaporation is described in terms of the temperature difference between liquid-vapor and the inertial forces. The internal liquid circulation driven by surface-shear stresses due to convection enhances the evaporation rate. Numerical simulations demonstrate that for higher Reynolds numbers, the dynamics of vaporization flux can be significantly affected, which may cause an oscillatory behavior on the droplet evaporation. The droplet-wake interaction and local mass flux are discussed in detail.
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| 5. |
- Andreasson, Jakob, et al.
(författare)
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Saturated ablation in metal hydrides and acceleration of protons and deuterons to keV energies with a soft-x-ray laser
- 2011
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Ingår i: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. - 1539-3755 .- 1550-2376. ; 83:1, s. 016403-
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Tidskriftsartikel (refereegranskat)abstract
- Studies of materials under extreme conditions have relevance to a broad area of research, including planetary physics, fusion research, materials science, and structural biology with x-ray lasers. We study such extreme conditions and experimentally probe the interaction between ultrashort soft x-ray pulses and solid targets (metals and their deuterides) at the FLASH free-electron laser where power densities exceeding 1017 W/cm2 were reached. Time-of-flight ion spectrometry and crater analysis were used to characterize the interaction. The results show the onset of saturation in the ablation process at power densities above 1016 W/cm2. This effect can be linked to a transiently induced x-ray transparency in the solid by the femtosecond x-ray pulse at high power densities. The measured kinetic energies of protons and deuterons ejected from the surface reach several keV and concur with predictions from plasma-expansion models. Simulations of the interactions were performed with a nonlocal thermodynamic equilibrium code with radiation transfer. These calculations return critical depths similar to the observed crater depths and capture the transient surface transparency at higher power densities.
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| 6. |
- Argun, Aykut, et al.
(författare)
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Experimental realization of a minimal microscopic heat engine
- 2017
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Ingår i: Physical review. E. - : AMER PHYSICAL SOC. - 2470-0045 .- 2470-0053. ; 96
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Tidskriftsartikel (refereegranskat)abstract
- Microscopic heat engines are microscale systems that convert energy flows between heat reservoirs into work or systematic motion. We have experimentally realized a minimal microscopic heat engine. It consists of a colloidal Brownian particle optically trapped in an elliptical potential well and simultaneously coupled to two heat baths at different temperatures acting along perpendicular directions. For a generic arrangement of the principal directions of the baths and the potential, the symmetry of the system is broken, such that the heat flow drives a systematic gyrating motion of the particle around the potential minimum. Using the experimentally measured trajectories, we quantify the gyrating motion of the particle, the resulting torque that it exerts on the potential, and the associated heat flow between the heat baths. We find excellent agreement between the experimental results and the theoretical predictions.
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| 7. |
- Argun, Aykut, et al.
(författare)
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Non-Boltzmann stationary distributions and nonequilibrium relations in active baths
- 2016
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Ingår i: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. - 1539-3755 .- 1550-2376. ; 94
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Tidskriftsartikel (refereegranskat)abstract
- Most natural and engineered processes, such as biomolecular reactions, protein folding, and population dynamics, occur far from equilibrium and therefore cannot be treated within the framework of classical equilibrium thermodynamics. Here we experimentally study how some fundamental thermodynamic quantities and relations are affected by the presence of the nonequilibrium fluctuations associated with an active bath. We show in particular that, as the confinement of the particle increases, the stationary probability distribution of a Brownian particle confined within a harmonic potential becomes non-Boltzmann, featuring a transition from a Gaussian distribution to a heavy-tailed distribution. Because of this, nonequilibrium relations (e.g., the Jarzynski equality and Crooks fluctuation theorem) cannot be applied. We show that these relations can be restored by using the effective potential associated with the stationary probability distribution. We corroborate our experimental findings with theoretical arguments.
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| 8. |
- Armas, Jay, et al.
(författare)
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Newton-Cartan submanifolds and fluid membranes
- 2020
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Ingår i: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. - : American Physical Society (APS). - 1539-3755 .- 1550-2376. ; 101:6
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Tidskriftsartikel (refereegranskat)abstract
- We develop the geometric description of submanifolds in Newton-Cartan spacetime. This provides the necessary starting point for a covariant spacetime formulation of Galilean-invariant hydrodynamics on curved surfaces. We argue that this is the natural geometrical framework to study fluid membranes in thermal equilibrium and their dynamics out of equilibrium. A simple model of fluid membranes that only depends on the surface tension is presented and, extracting the resulting stresses, we show that perturbations away from equilibrium yield the standard result for the dispersion of elastic waves. We also find a generalization of the Canham-Helfrich bending energy for lipid vesicles that takes into account the requirements of thermal equilibrium.
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| 9. |
- Aurell, Erik, et al.
(författare)
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Boundary layers in stochastic thermodynamics
- 2012
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Ingår i: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. - : American Physical Society. - 1539-3755 .- 1550-2376. ; 85:2, s. 020103-
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Tidskriftsartikel (refereegranskat)abstract
- We study the problem of optimizing released heat or dissipated work in stochastic thermodynamics. In the overdamped limit these functionals have singular solutions, previously interpreted as protocol jumps. We show that a regularization, penalizing a properly defined acceleration, changes the jumps into boundary layers of finite width. We show that in the limit of vanishing boundary layer width no heat is dissipated in the boundary layer, while work can be done. We further give an alternative interpretation of the fact that the optimal protocols in the overdamped limit are given by optimal deterministic transport (Burgers equation).
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| 10. |
- Aurell, Erik, et al.
(författare)
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Dynamic mean-field and cavity methods for diluted Ising systems
- 2012
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Ingår i: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. - 1539-3755 .- 1550-2376. ; 85:3, s. 031119-
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Tidskriftsartikel (refereegranskat)abstract
- We compare dynamic mean-field and dynamic cavity methods to describe the stationary states of dilute kinetic Ising models. We compute dynamic mean-field theory by expanding in interaction strength to third order, and we compare to the exact dynamic mean-field theory for fully asymmetric networks. We show that in diluted networks, the dynamic cavity method generally predicts magnetizations of individual spins better than both first-order ("naive") and second-order ("TAP") dynamic mean-field theory.
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