| 1. |
- Alikas, Krista, et al.
(författare)
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Robust remote sensing algorithms to derive the diffuse attenuation coefficient for lakes and coastal waters
- 2015
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Ingår i: Limnology and Oceanography. - : Wiley. - 1541-5856. ; 13:8, s. 402-415
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Tidskriftsartikel (refereegranskat)abstract
- In this study, empirical and semianalytical algorithms are developed and compared for optically complex waters to retrieve the diffuse attenuation coefficient of downwelling irradiance (Kd(lambda)) from satellite data. In the first approach, a band ratio algorithm was used. Various sets of MERIS band ratios were tested to achieve the best estimates for K-d(490) based on the in situ dataset which was measured in Nordic lakes (oligotrophic to eutrophic conditions). In the second approach, K-d(490) was expressed as a function of inherent optical properties which were retrieved from MERIS standard products. The algorithms from both approaches were tested against an independent data set and validated in optically complex coastal waters in the Baltic Sea and in Nordic lakes with high concentrations of coloured dissolved organic matter (0.3 < a(cdom)(442) m(-1) < 4.5), chlorophyll a (Chl a) (0.7< C-Chl a(mg m(-3))< 67.5) and total suspended matter (TSM) (0.5 < C-TSM(g m(-3)) < 26.4). MERIS-derived K-d(490) values showed reliable estimates in case of both methods. The results indicate that for band ratio algorithms, the root mean square error (RMSE) decreases and the coefficient of determination (R-2) increases when using longer wavelengths in the visible spectrum as a reference band. It was found that the best estimates were retrieved from MERIS data when using the ratio of R-rs(490)/R-rs(709) for coastal waters (K-d(490) < 2.5 m(-1)) and the ratio R-rs(560)/R-rs(709) for more turbid inland waters (Kd(490) > 2.5 m(-1)). As a result, a combined band ratio algorithm was developed, which provides a promising approach R-2 = 0.98, RMSE= 17%, N = 34, p < 0.05) for estimating K-d(490) over a wide range of values (0.3-6.1 m(-1)).
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| 2. |
- Atamanchuk, Dariia, 1987, et al.
(författare)
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Performance of a lifetime-based optode for measuring partial pressure of carbon dioxide in natural waters
- 2014
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Ingår i: Limnology and Oceanography : Methods. - : Wiley. - 1541-5856. ; 12, s. 63-73
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Tidskriftsartikel (refereegranskat)abstract
- This article reports the performance of an improved, newly developed, compact, low power, lifetime-based optical sensor (optode) for measuring partial pressure of dissolved CO2 gas (pCO2) in natural waters. The results suggest that after preconditioning, these sensors are stable in water for time periods longer than 7 months. The wide dynamic range of about 0-50000 μatm opens possibilities for numerous applications of which some are presented. In normal marine environments with pCO2 levels of 200-1000 μatm, the best-obtained precision was about ±2 μatm, and the absolute accuracy was between 2-75 μatm, depending on the deployment and the quality of the collected reference water samples. One limitation is that these sensors will become irreversibly poisoned by H2S and should thus not be deployed in sulphidic environments.
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| 3. |
- Baden, Susanne P., 1952, et al.
(författare)
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Relative importance of trophic interactions and nutrient enrichment in seagrass ecosystems: A broad-scale field experiment in the Baltic-Skagerrak area.
- 2010
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Ingår i: Limnology and Oceanography. - 1541-5856. ; 55:3, s. 1435-1448
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Tidskriftsartikel (refereegranskat)abstract
- The interaction of eutrophication and predation in structuring seagrass Zostera marina L. ecosystems was assessed in a field experiment in three regions along an estuarine salinity gradient, from southern Finland to the Skagerrak area of the Swedish west coast. All regions are considered to be affected by eutrophication and overfishing but differ in the abundance of intermediate predators (e.g., small fish, shrimp, and crabs), mesograzers, and the biomass of epiphytic algae. Using transplanted Zostera (eelgrass), nutrient levels and intermediate predator abundance were manipulated in a full-factorial cage experiment. On the Swedish west coast, where ambient densities of mesograzers are very low, epiphytic algae responded strongly to nutrient enrichment, resulting in significantly reduced growth of eelgrass. At the Baltic sites however, where ambient densities of mesograzers are high, no significant growth of epiphytic algae was detected, and only grazer biomass responded to nutrient enrichment. Predation from small fish, shrimp, and crabs decreased the biomass of mesograzers by . 98% on the Swedish west coast, but natural predators had no significant effect on mesograzers biomass at the Baltic sites. Predation and nutrient enrichment interacted to affect the growth of eelgrass by controlling the biomass of mesograzers and nuisance algae. The differing effect of nutrient enrichment and grazing in the three regions may therefore be a result of the prevailing low and high predation pressure on mesograzers in Zostera. This absence or presence of predation may derive from interregional changes in trophic interactions, possibly caused by a combination of eutrophication and overfishing.
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| 4. |
- Barão, Lúcia, et al.
(författare)
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Alkaline-extractable silicon from land to ocean: A challenge for biogenic silicon determination
- 2015
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Ingår i: Limnology and Oceanography. - : Wiley. - 1541-5856. ; , s. n/a-n/a
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Tidskriftsartikel (refereegranskat)abstract
- The biogeochemical cycling of silicon (Si) along the land-to-ocean continuum is studied by a variety of research fields and for a variety of scientific reasons. However, there is an increasing need to refine the methodology and the underlying assumptions used to determine biogenic silica (BSi) concentrations. Recent evidence suggests that contributions of nonbiogenic sources of Si dissolving during alkaline extractions, not corrected by standard silicate mineral dissolution correction protocols, can be substantial. The ratio between dissolved Si and aluminum (Al) monitored continuously during the alkaline extraction can be used to infer the origin of the Si fractions present. In this study, we applied both a continuous analysis method (0.5 M NaOH) and a traditional 0.1 M Na2CO3 extraction to a wide array of samples: (1) terrestrial vegetation, (2) soils from forest, cropland and pasture, (3) lake sediments, (4) suspended particulate matter and sediments from rivers, (5) sediments from estuaries and salt marshes and (6) ocean sediments. Our results indicate that the 0.1 M Na2CO3 extraction protocol can overestimate the BSi content, by simultaneously dissolving Si fractions of nonbiogenic origin that may represent up to 100% of the Si traditionally considered as biogenic, hampering interpretation especially in some deeper soil horizons, rivers and coastal oceanic sediments. Moreover, although the term amorphous Si was coined to reflect a growing awareness of nonbiogenic phases we show it is actually inappropriate in samples where silicate minerals may account for a large part of the extracted Si even after linear mineral correction.
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| 5. |
- Bianco, Giuseppe, et al.
(författare)
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Plankton 3D tracking: the importance of camera calibration in stereo computer vision systems
- 2013
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Ingår i: Limnology and Oceanography: Methods. - : Wiley. - 1541-5856. ; 11, s. 278-286
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Tidskriftsartikel (refereegranskat)abstract
- Computer vision applications are very useful to study animal movements, but due to their intrinsic complexity they are challenging to design, implement, and use properly. We here describe a calibration procedure for a laboratory stereo vision system for tracking zooplankton in three dimensions (3D). We demonstrate the crucial importance of using a correct calibration for proper interpretation of animal swimming tracks. We also address the effect of the air-water shift phase in the calibration procedure. Actually, not performing a proper calibration caused an average positional error of more than 25 body-lengths in the investigated animal Daphnia magna. Furthermore, we evaluate the different outcomes of using 2D and 3D tracks obtained with a calibrated stereo vision system and show that although 2D tracking might be sufficient in some cases, the method was in our study unable to give information of swimming path geometry and underestimated the speed by 25%. Finally, we discuss consequences for biologically relevant questions when an incorrect methodology is used and strongly recommend that future studies provide detailed descriptions of the framework used for calibration to allow for comparisons between different studies.
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| 6. |
- Blackburn, Nicholas, et al.
(författare)
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The use of an automated organism tracking microscope in mesocosm experiments
- 2022
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Ingår i: Limnology and Oceanography. - : John Wiley & Sons. - 1541-5856. ; 20:12, s. 768-780
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Tidskriftsartikel (refereegranskat)abstract
- A method for automatically counting and measuring sizes and motility behavior of zooplankton and phytoplankton in water samples is presented. Two video cameras are focused on separate optical chambers of different sizes. The chambers are filled and emptied repeatedly by synchronized pumps. Real-time motion analysis is performed by computer on the respective video feeds. Fluorescence from chlorophyll a (Chl a) is imaged at single pixel resolution. Measured parameters for individual organisms include size, swimming velocity, motility patterns, and chlorophyll fluorescence density. The system was tested during a mesocosm experiment where it was mounted on one of several mesocosm columns. The results were validated against Chl a measurements and microscopy counts. A sampling interval of 1 per day revealed detailed dynamics of chlorophyll activity as well as shifts in both the phytoplankton and zooplankton community structure over the course of a month. A helix coefficient, a metric related to organism motility behavior, showed substantial variation over time, consistent with changing plankton communities. Sampling rates as frequent as 1 per hour enables detailed analysis of diurnal vertical migration and similar phenomena at fixed sampling points.
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| 7. |
- Block, Benjamin D., et al.
(författare)
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The unique methodological challenges of winter limnology
- 2019
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Ingår i: Limnology and Oceanography. - : Wiley-Blackwell. - 1541-5856. ; 17:1, s. 42-57
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Forskningsöversikt (refereegranskat)abstract
- Winter is an important season for many limnological processes, which can range from biogeochemical transformations to ecological interactions. Interest in the structure and function of lake ecosystems under ice is on the rise. Although limnologists working at polar latitudes have a long history of winter work, the required knowledge to successfully sample under winter conditions is not widely available and relatively few limnologists receive formal training. In particular, the deployment and operation of equipment in below 0 degrees C temperatures pose considerable logistical and methodological challenges, as do the safety risks of sampling during the ice-covered period. Here, we consolidate information on winter lake sampling and describe effective methods to measure physical, chemical, and biological variables in and under ice. We describe variation in snow and ice conditions and discuss implications for sampling logistics and safety. We outline commonly encountered methodological challenges and make recommendations for best practices to maximize safety and efficiency when sampling through ice or deploying instruments in ice-covered lakes. Application of such practices over a broad range of ice-covered lakes will contribute to a better understanding of the factors that regulate lakes during winter and how winter conditions affect the subsequent ice-free period.
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| 8. |
- Chu, S. N., et al.
(författare)
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Field evaluation of a low-powered, profiling pCO2 system in coastal Washington
- 2020
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Ingår i: Limnology and Oceanography: Methods. - : Wiley. - 1541-5856. ; 18:6, s. 280-296
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Tidskriftsartikel (refereegranskat)abstract
- Summertime upwelling of deep, corrosive waters on the continental shelf of the northern California Current System can exacerbate ocean acidification conditions, providing unsuitable environments for development of calcifying organisms and finfish that are important to the local economy. To better understand the carbonate system in this dynamic region, two recently developed technologies were combined with other sensors to obtain high-frequency carbon profile data from July 2017 to September 2017. The compact, low-power sensor package was composed of an optical sensor for partial pressure of carbon dioxide (pCO2 optode, Aanderaa model #4797) integrated onto a wave-powered PRofiling crAWLER (PRAWLER). The PRAWLER profiled from 3 to 80 m, stopping at fixed depths for varying lengths of time to allow for pCO2 equilibration. pCO2 derived from a regional empirical algorithm was used to correct optode drift using data at 80 m. Near-surface adjusted optode pCO2 agreed within 6 ± 42 μatm to surface pCO2 from a nearby Moored Autonomous pCO2 instrument. Throughout the water column, optode pCO2 compared to algorithm pCO2 within −28 ± 66 μatm. Overall, optode uncertainty was 35–72 μatm based on root-mean-square errors from all comparison data sets. Errors are attributed to optode calibration, adjustment, algorithm uncertainty, and environmental variability between optode and reference data. Improvements for optode performance within this profiling application include using more stable sensing foils, in situ calibration, and pumped flow over the sensing foil. Additionally, the study revealed undersaturated (corrosive) waters with respect to aragonite below 60 m throughout the deployment that reached up to 40 m by mid-September. © 2020 The Authors. Limnology and Oceanography: Methods published by Wiley Periodicals, Inc. on behalf of Association for the Sciences of Limnology and Oceanography.
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| 9. |
- Cole, Jonathan J, et al.
(författare)
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Multiple approaches to estimating air-water gas exchange in small lakes
- 2010
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Ingår i: Limnology and Oceanography. - : American Society of Limnology and Oceanography. - 1541-5856. ; 8, s. 285-293
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Tidskriftsartikel (refereegranskat)abstract
- The rate of gas exchange between air and water is an essential quantity in a number of contexts, from mass balances to the calculation of whole-system metabolism. The exchange of a gas between water and the atmosphere is controlled by differential partial pressures of gases in air and in water (both straightforward to measure) and by the amount of turbulent energy exchange between the air-water interface, the measurement of which is neither simple nor direct. This physical exchange is often expressed as a piston velocity (k). We compared four methods for estimating k in a series of small (0.3 to 45 ha), low-wind (mean wind < 3 m s–1) lakes: 1) floating chambers using ambient CH4; 2) whole-lake SF6 additions; 3) three wind-based models from the literature; and 4) C mass balances constrained by whole-lake 13C additions. All of the methods, with the exception of one windbased model, converged on values for k600 of between 0.35 and 0.74 m d–1 with no biases among methods. The floating chambers, if designed properly, are a cost-effective way of obtaining site-specific values of k for low wind lakes over fairly short time frames (hours).
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| 10. |
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