| 1. |
- Broberg, Gudrun, et al.
(författare)
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Socio-economic and demographic determinants affecting participation in the Swedish cervical screening program: A population-based case-control study
- 2018
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Ingår i: Plos One. - San Francisco, CA, USA : Public Library of Science (PLoS). - 1932-6203. ; 13:1
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Tidskriftsartikel (refereegranskat)abstract
- Background Cervical screening programs are highly protective for cervical cancer, but only for women attending screening procedure. Identify socio-economic and demographic determinants for non-attendance in cervical screening. Population: Source population was all women eligible for screening. Based on complete screening records, two groups of women aged 30-60 were compared. The case group, non-attending women, (N = 314,302) had no smear registered for 6-8 years. The control group (N = 266,706) attended within 90 days of invitation. Main outcome measures: Risk of non-attendance by 9 groups of socioeconomic and demographic variables. Analysis: Unadjusted odds ratios (OR) and OR after adjustment for all variables in logistic regression models were calculated. Women with low disposable family income (adjOR 2.06; 95% confidence interval (CI) 2.01-2.11), with low education (adjOR 1.77; CI 1.73-1.81) and not cohabiting (adjOR 1.47; CI 1.45-1.50) were more likely to not attend cervical screening. Other important factors for non-attendance were being outside the labour force and receiving welfare benefits. Swedish counties are responsible for running screening programs; adjusted OR for non-participation in counties ranged from OR 4.21 (CI 4.06-4.35) to OR 0.54 (CI 0.52-0.57), compared to the reference county. Being born outside Sweden was a risk factor for non-attendance in the unadjusted analysis but this disappeared in certain large groups after adjustment for socioeconomic factors. County of residence and socio-economic factors were strongly associated with lower attendance in cervical screening, while being born in another country was of less importance. This indicates considerable potential for improvement of cervical screening attendance in several areas if best practice of routines is adopted.
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| 2. |
- Gonzalo P., Rodrigo, 1980-, et al.
(författare)
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Enabling workflow-aware scheduling on HPC systems
- 2017
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Ingår i: HPDC '17. - : ACM Digital Library. - 9781450346993 ; , s. 3-14
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Konferensbidrag (övrigt vetenskapligt/konstnärligt)abstract
- Scientific workflows are increasingly common in the workloads of current High Performance Computing (HPC) systems. However, HPC schedulers do not incorporate workflow-specific mechanisms beyond the capacity to declare dependencies between their jobs. Thus, workflows are run as sets of batch jobs with dependencies, which induces long intermediate wait times and, consequently, long workflow turnaround times. Alternatively, to reduce their turnaround time, workflows may be submitted as single pilot jobs that are allocated their maximum required resources for their entire runtime. Pilot jobs achieve shorter turnaround times but reduce the HPC system's utilization because resources may idle during the workflow's execution. We present a workflow-aware scheduling (WoAS) system that enables existing scheduling algorithms to exploit fine-grained information on a workflow's resource requirements and structure without modification. The current implementation of WoAS is integrated into Slurm, a widely used HPC batch scheduler. We evaluate the system using a simulator using real and synthetic workflows and a synthetic baseline workload that captures job patterns observed over three years of workload data from Edison, a large supercomputer hosted at the National Energy Research Scientific Computing Center. Our results show that WoAS reduces workflow turnaround times and improves system utilization without significantly slowing down conventional jobs.
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| 3. |
- Jalkanen, J. P., et al.
(författare)
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Modelling of ships as a source of underwater noise
- 2018
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Ingår i: Ocean Science. - : Copernicus GmbH. - 1812-0792 .- 1812-0784. ; 14:6, s. 1373-1383
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Tidskriftsartikel (refereegranskat)abstract
- In this paper, a methodology is presented for modelling underwater noise emissions from ships based on realistic vessel activity in the Baltic Sea region. This paper combines the Wittekind noise source model with the Ship Traffic Emission Assessment Model (STEAM) in order to produce regular updates for underwater noise from ships. This approach allows the construction of noise source maps, but requires parameters which are not commonly available from commercial ship technical databases. For this reason, alternative methods were necessary to fill in the required information. Most of the parameters needed contain information that is available during the STEAM model runs, but features describing propeller cavitation are not easily recovered for the world fleet. Baltic Sea ship activity data were used to generate noise source maps for commercial shipping. Container ships were recognized as the most significant source of underwater noise, and the significant potential for an increase in their contribution to future noise emissions was identified.
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| 4. |
- Karasalo, I., et al.
(författare)
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Estimates of source spectra of ships from long term recordings in the Baltic sea
- 2017
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Ingår i: Frontiers in Marine Science. - : Frontiers Media SA. - 2296-7745. ; 4:JUN
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Tidskriftsartikel (refereegranskat)abstract
- © 2017 Karasalo, östberg, Sigray, Jalkanen, Johansson, Liefvendahl and Bensow. Estimates of the noise source spectra of ships based on long term measurements in the Baltic sea are presented. The measurement data were obtained by a hydrophone deployed near a major shipping lane south of the island öland. Data from over 2,000 close-by passages were recorded during a 3 month period from October to December 2014. For each passage, ship-to-hydrophone transmission loss (TL) spectra were computed by sound propagation modeling using 1. bathymetry data from the Baltic Sea Bathymetry Database (BSBD), 2. sound speed profiles from the HIROMB oceanographic model, 3. seabed parameters obtained by acoustic inversion of data from a calibrated source, and 4. AIS data providing information on each ship's position. These TL spectra were then subtracted from the received noise spectra to estimate the free field source level (SL) spectra for each passage. The SL were compared to predictions by some existing models of noise emission from ships. Input parameters to the models, including e.g., ship length, width, speed, displacement, and engine mass, were obtained from AIS (Automatic Identification System) data and the STEAM database of the Finnish Metereological Institute (FMI).
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| 5. |
- Rodrigo, Gonzalo P., 1980-, et al.
(författare)
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A2L2 : an application aware flexible HPC scheduling model for low-latency allocation
- 2015
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Ingår i: VTDC '15. - New York, NY, USA : ACM Digital Library. - 9781450335737 ; , s. 11-19
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Konferensbidrag (refereegranskat)abstract
- High-performance computing (HPC) is focused on providing large-scale compute capacity to scientific applications. HPC schedulers tend to be optimized for large parallel batch jobs and, as such, often overlook the requirements of other scientific applications. In this work, we propose a cloud-inspired HPC scheduling model that aims to capture application performance and requirement models (Application Aware - A2) and dynamically resize malleable application resource allocations to be able to support applications with critical performance or deadline requirements. (Low Latency allocation - L2). The proposed model incorporates measures to improve data-intensive applications performance on HPC systems and is derived from a set of cloud scheduling techniques that are identified as applicable in HPC environments. The model places special focus on dynamically malleable applications; data-intensive applications that support dynamic resource allocation without incurring severe performance penalties; which are proposed for fine-grained back-filling and dynamic resource allocation control without job preemption.
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| 6. |
- Andersson, P, et al.
(författare)
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Clinical correlates of oral impacts on daily performances.
- 2010
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Ingår i: International journal of dental hygiene. - : Wiley. - 1601-5037 .- 1601-5029. ; 8:3, s. 219-26
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Tidskriftsartikel (refereegranskat)abstract
- The aim of this study was to investigate the associations between oral health measures and oral health-related quality of life as captured by OIDP (oral impacts on daily performances).
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| 7. |
- Andås, Charlotte Andren, et al.
(författare)
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A new dental insurance scheme - effects on the treatment provided and costs
- 2014
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Ingår i: Swedish Dental Journal. - 0347-9994. ; 38:2, s. 57-66
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Tidskriftsartikel (refereegranskat)abstract
- The aim of this study was to investigate whether the revenues cover the costs in a pilot capitation plan, a dental insurance scheme, and to compare this capitation plan (CP) with the original fee-for-service system (FFS), in terms of the amount and type of dental care provided. Data was collected longitudinally over a period of three years from 1,650 CP patients in five risk groups at a test clinic, and from 1,609 (from the test clinic) and 3,434 (from a matched control clinic) FFS patients, in Goteborg, Sweden. The care investigated was the number of total treatments provided and the number of examinations by dentists and dental hygienists, together with preventive, restorative and emergency treatments. The economic outcome was positive from the administrator's perspective, in all risk groups for the three-year period. The amount and type of care provided differed between the payment models, as CP patients received more preventive treatments, less restorative treatments, and more examinations by dental hygienists than the FFS patients. Emergency treatment was performed more often on CP patients, and the difference was due to a higher frequency of such treatments among women in the CP group. The difference between clinics concerning certain treatment measures was sometimes greater than the difference between payment models. The results from this study indicate a net positive economic outcome for the pilot CP system over three years. The payment model and the clinic affiliation had impact on what type and amount of dental care the patients received. This might suggest that the risk of skewed selection and its consequences as well as the influence of clinic-specific practice need further investigation, to ensure economic sustainability in a longer perspective.
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| 8. |
- Byrne, James, et al.
(författare)
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A review of cloud computing simulation platforms and related environments
- 2017
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Ingår i: Proceedings of the 7th International Conference on Cloud Computing and Services Science. - : SciTePress. - 9789897582431 ; , s. 679-691
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Konferensbidrag (refereegranskat)abstract
- Recent years have seen an increasing trend towards the development of Discrete Event Simulation (DES) platforms to support cloud computing related decision making and research. The complexity of cloud environments is increasing with scale and heterogeneity posing a challenge for the efficient management of cloud applications and data centre resources. The increasing ubiquity of social media, mobile and cloud computing combined with the Internet of Things and emerging paradigms such as Edge and Fog Computing is exacerbating this complexity. Given the scale, complexity and commercial sensitivity of hyperscale computing environments, the opportunity for experimentation is limited and requires substantial investment of resources both in terms of time and effort. DES provides a low risk technique for providing decision support for complex hyperscale computing scenarios. In recent years, there has been a significant increase in the development and extension of tools to support DES for cloud computing resulting in a wide range of tools which vary in terms of their utility and features. Through a review and analysis of available literature, this paper provides an overview and multi-level feature analysis of 33 DES tools for cloud computing environments. This review updates and extends existing reviews to include not only autonomous simulation platforms, but also on plugins and extensions for specific cloud computing use cases. This review identifies the emergence of CloudSim as a de facto base platform for simulation research and shows a lack of tool support for distributed execution (parallel execution on distributed memory systems).
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| 9. |
- Gonzalo P., Rodrigo, 1980-
(författare)
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HPC scheduling in a brave new world
- 2017
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Many breakthroughs in scientific and industrial research are supported by simulations and calculations performed on high performance computing (HPC) systems. These systems typically consist of uniform, largely parallel compute resources and high bandwidth concurrent file systems interconnected by low latency synchronous networks. HPC systems are managed by batch schedulers that order the execution of application jobs to maximize utilization while steering turnaround time. In the past, demands for greater capacity were met by building more powerful systems with more compute nodes, greater transistor densities, and higher processor operating frequencies. Unfortunately, the scope for further increases in processor frequency is restricted by the limitations of semiconductor technology. Instead, parallelism within processors and in numbers of compute nodes is increasing, while the capacity of single processing units remains unchanged. In addition, HPC systems’ memory and I/O hierarchies are becoming deeper and more complex to keep up with the systems’ processing power. HPC applications are also changing: the need to analyze large data sets and simulation results is increasing the importance of data processing and data-intensive applications. Moreover, composition of applications through workflows within HPC centers is becoming increasingly important. This thesis addresses the HPC scheduling challenges created by such new systems and applications. It begins with a detailed analysis of the evolution of the workloads of three reference HPC systems at the National Energy Research Supercomputing Center (NERSC), with a focus on job heterogeneity and scheduler performance. This is followed by an analysis and improvement of a fairshare prioritization mechanism for HPC schedulers. The thesis then surveys the current state of the art and expected near-future developments in HPC hardware and applications, and identifies unaddressed scheduling challenges that they will introduce. These challenges include application diversity and issues with workflow scheduling or the scheduling of I/O resources to support applications. Next, a cloud-inspired HPC scheduling model is presented that can accommodate application diversity, takes advantage of malleable applications, and enables short wait times for applications. Finally, to support ongoing scheduling research, an open source scheduling simulation framework is proposed that allows new scheduling algorithms to be implemented and evaluated in a production scheduler using workloads modeled on those of a real system. The thesis concludes with the presentation of a workflow scheduling algorithm to minimize workflows’ turnaround time without over-allocating resources.
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| 10. |
- Gonzalo P., Rodrigo, 1980-, et al.
(författare)
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ScSF : a scheduling simulation framework
- 2018
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Ingår i: Job Scheduling Strategies for Parallel Processing. - Cham : Springer. - 9783319773971 - 9783319773988 ; , s. 152-173
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Konferensbidrag (refereegranskat)abstract
- High-throughput and data-intensive applications are increasingly present, often composed as workflows, in the workloads of current HPC systems. At the same time, trends for future HPC systems point towards more heterogeneous systems with deeper I/O and memory hierarchies. However, current HPC schedulers are designed to support classical large tightly coupled parallel jobs over homogeneous systems. Therefore, There is an urgent need to investigate new scheduling algorithms that can manage the future workloads on HPC systems. However, there is a lack of appropriate models and frameworks to enable development, testing, and validation of new scheduling ideas.In this paper, we present an open-source scheduler simulation framework (ScSF) that covers all the steps of scheduling research through simulation. ScSF provides capabilities for workload modeling, workload generation, system simulation, comparative workload analysis, and experiment orchestration. The simulator is designed to be run over a distributed computing infrastructure enabling to test at scale. We describe in detail a use case of ScSF to develop new techniques to manage scientific workflows in a batch scheduler. In the use case, such technique was implemented in the framework scheduler. For evaluation purposes, 1728 experiments, equivalent to 33 years of simulated time, were run in a deployment of ScSF over a distributed infrastructure of 17 compute nodes during two months. Finally, the experimental results were analyzed in the framework to judge that the technique minimizes workflows’ turnaround time without over-allocating resources. Finally, we discuss lessons learned from our experiences that will help future researchers.
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