| 1. |
- Lind, Karin, et al.
(författare)
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Non-LTE abundance corrections for late-type stars from 2000Å to 3 μm
- 2022
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Ingår i: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 665
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Tidskriftsartikel (refereegranskat)abstract
- Context. It is well known that cool star atmospheres depart from local thermodynamic equilibrium (LTE). Making an accurate abundance determination requires taking those effects into account, but the necessary non-LTE (hereafter NLTE) calculations are often lacking.Aims. Our goal is to provide detailed estimates of NLTE effects for FGK type stars for all spectral lines from the ultraviolet (UV) to the near infrared (NIR) that are potentially useful as abundance diagnostics. The first paper in this series focusses on the light elements Na, Mg, and Al.Methods. The code PySME was used to compute curves of growth for 2158 MARCS model atmospheres in the parameter range 3800 < T-eff < 8000 K, 0.0 < log(g) < 5.5, and -5 < [Fe/H] < +0.5. Two microturbulence values, 1 and 2 km s(-1), and nine abundance points spanning -1 < [X/Fe] < 1 for element X, are used to construct individual line curves of growth by calculating the equivalent widths of 35 Na lines, 134 Mg lines, and 34 Al lines. The lines were selected in the wavelength range between 2000 angstrom and 3 mu m.Results. We demonstrate the power of the new grids with LTE and NLTE abundance analysis by means of equivalent width measurements of five benchmark stars; the Sun, Arcturus, HD 84937, HD 140283 and HD 122563. For Na, the NLTE abundances are lower than in LTE and show markedly reduced line-to-line scatter in the metal-poor stars. For Mg, we confirm previous reports of a significant similar to 0.25 dex LTE ionisation imbalance in metal-poor stars that is only slightly improved in NLTE (similar to 0.18 dex). LTE abundances based on Mg II lines agree better with models of Galactic chemical evolution. For Al, NLTE calculations strongly reduce an similar to 0.6 dex ionisation imbalance seen in LTE for the metal-poor stars. The abundance corrections presented in this work are in good agreement with previous studies for the subset of lines that overlap, with the exception of strongly saturated lines.Conclusions. A consensus between different abundance diagnostics is the most powerful tool available to stellar spectroscopists to assess the accuracy of the models. Here we report that NLTE abundance analysis in general leads to improved agreement, in particular for metal-poor stars. The residual scatter is believed to be caused mainly by unresolved blends and/or poor atomic data, with the notable exception of Mg, which calls for further investigation.
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| 2. |
- Maxwell, Karen L., et al.
(författare)
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Protein folding : Defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins
- 2005
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Ingår i: Protein Science. - : Wiley. - 0961-8368 .- 1469-896X. ; 14, s. 602-16
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Tidskriftsartikel (refereegranskat)abstract
- Recent years have seen the publication of both empirical and theoretical relationships predicting the rates with which proteins fold. Our ability to test and refine these relationships has been limited, however, by a variety of difficulties associated with the comparison of folding and unfolding rates, thermodynamics, and structure across diverse sets of proteins. These difficulties include the wide, potentially confounding range of experimental conditions and methods employed to date and the difficulty of obtaining correct and complete sequence and structural details for the characterized constructs. The lack of a single approach to data analysis and error estimation, or even of a common set of units and reporting standards, further hinders comparative studies of folding. In an effort to overcome these problems, we define here a "consensus" set of experimental conditions (25°C at pH 7.0, 50 mM buffer), data analysis methods, and data reporting standards that we hope will provide a benchmark for experimental studies. We take the first step in this initiative by describing the folding kinetics of 30 apparently two-state proteins or protein domains under the consensus conditions. The goal of our efforts is to set uniform standards for the experimental community and to initiate an accumulating, self-consistent data set that will aid ongoing efforts to understand the folding process.
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| 3. |
- Montelius, M., et al.
(författare)
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Chemical evolution of ytterbium in the Galactic disk
- 2022
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Ingår i: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 665
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Tidskriftsartikel (refereegranskat)abstract
- Context. Measuring the abundances of neutron-capture elements in Galactic disk stars is an important part of understanding key stellar and galactic processes. In the optical wavelength regime a number of different neutron-capture elements have been measured; however, only the s-process-dominated element cerium has been accurately measured for a large sample of disk stars from the infrared H band. The more r-process dominated element ytterbium has only been measured in a small subset of stars so far. Aims. In this study we aim to measure the ytterbium (Yb) abundance of local disk giants using the Yb II line at lambda(air) = 16 498 angstrom. We also compare the resulting abundance trend with cerium and europium abundances for the same stars to analyse the s- and r-process contributions. Methods. We analyse 30 K giants with high-resolution H band spectra using spectral synthesis. The very same stars have already been analysed using high-resolution optical spectra via the same method, but it was not possible to determine the abundance of Yb from those spectra due to blending issues for stars with [Fe/H] > -1. In the present analysis, we utilise the stellar parameters determined from the optical analysis. Results. We determined the Yb abundances with an estimated uncertainty for [Yb/Fe] of 0.1 dex. By comparison, we found that the [Yb/Fe] trend closely follows the [Eu/Fe] trend and has clear s-process enrichment in identified s-rich stars. This comparison confirms both that the validity of the Yb abundances is ensured and that the theoretical prediction that the s-/r-process contribution to the origin of Yb of roughly 40/60 is supported. Conclusions. These results show that, with a careful and detailed analysis of infrared spectra, reliable Yb abundances can be derived for a wider sample of cooler giants in the range -1.1 < [Fe/H] < 0.3. This is promising for further studies of the production of Yb and for the r-process channel, key for galactochemical evolution, in the infrared.
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| 4. |
- Baryawno, Ninib, et al.
(författare)
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Detection of human cytomegalovirus in medulloblastomas reveals a potential therapeutic target
- 2011
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Ingår i: Journal of Clinical Investigation. - 0021-9738 .- 1558-8238. ; 121:10, s. 4043-4055
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Tidskriftsartikel (refereegranskat)abstract
- Medulloblastomas are the most common malignant brain tumors in children. They express high levels of COX-2 and produce PGE(2), which stimulates tumor cell proliferation. Human cytomegalovirus (HCMV) is prevalent in the human population and encodes proteins that provide immune evasion strategies and promote oncogenic transformation and oncomodulation. In particular, HCMV induces COX-2 expression; STAT3 phosphorylation; production of PGE2, vascular endothelial growth factor, and IL-6; and tumor formation in vivo. Here, we show that a large proportion of primary medulloblastomas and medulloblastoma cell lines are infected with HCMV and that COX-2 expression, along with PGE2 levels, in tumors is directly modulated by the virus. Our analysis indicated that both HCMV immediate-early proteins and late proteins are expressed in the majority of primary medulloblastomas. Remarkably, all of the human medulloblastoma cell lines that we analyzed contained HCMV DNA and RNA and expressed HCMV proteins at various levels in vitro. When engrafted into immunocompromised mice, human medulloblastoma cells induced expression of HCMV proteins. HCMV and COX-2 expression correlated in primary tumors, cell lines, and medulloblastoma xenografts. The antiviral drug valganciclovir and the specific COX-2 inhibitor celecoxib prevented HCMV replication in vitro and inhibited PGE2 production and reduced medulloblastoma tumor cell growth both in vitro and in vivo. Ganciclovir did riot affect the growth of HCMV-negative tumor cell lines. These findings imply an important role for HCMV in medulloblastoma and suggest HCMV as a novel therapeutic target for this tumor.
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| 5. |
- Bogdan, Cristian M, 1971-, et al.
(författare)
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Programming for Moving Bodies
- 2020
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Ingår i: ACM International Conference Proceeding Series. - New York, NY, USA : Association for Computing Machinery.
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Konferensbidrag (refereegranskat)abstract
- Movement plays an increasingly important role in interactive systems design, from users' physical engagement, to how designed artefacts can move or be moved, and to the concert between users and artefacts. Designers, as well as programmers, have to engage more and more in physical activities when they want to create appealing experiences involving movement. There is a need for articulating emerging dialogues between designers, developers, and their materials. We will explore such dialogues in a 2-half-day workshop, focusing on data and its challenges, on tools and methods, on sensing and actuation when designing or detecting subtle body movements, and on catering for bodily changes over time.
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| 6. |
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