| 1. |
- Aissaoui, Nesrine, 1983, et al.
(författare)
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FRET enhancement close to gold nanoparticles positioned in DNA origami constructs
- 2017
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Ingår i: Nanoscale. - Cambridge, United Kingdom : Royal Society of Chemistry (RSC). - 2040-3372 .- 2040-3364. ; 9:2, s. 673-683
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Tidskriftsartikel (refereegranskat)abstract
- Here we investigate the energy transfer rates of a Förster resonance energy transfer (FRET) pair positioned in close proximity to a 5 nm gold nanoparticle (AuNP) on a DNA origami construct. We study the distance dependence of the FRET rate by varying the location of the donor molecule, D, relative to the AuNP while maintaining a fixed location of the acceptor molecule, A. The presence of the AuNP induces an alteration in the spontaneous emission of the donor (including radiative and non-radiative rates) which is strongly dependent on the distance between the donor and AuNP surface. Simultaneously, the energy transfer rates are enhanced at shorter D-A (and D-AuNP) distances. Overall, in addition to the direct influence of the acceptor and AuNP on the donor decay there is also a significant increase in decay rate not explained by the sum of the two interactions. This leads to enhanced energy transfer between donor and acceptor in the presence of a 5 nm AuNP. We also demonstrate that the transfer rate in the three "particle" geometry (D + A + AuNP) depends approximately linearly on the transfer rate in the donor-AuNP system, suggesting the possibility to control FRET process with electric field induced by 5 nm AuNPs close to the donor fluorophore. It is concluded that DNA origami is a very versatile platform for studying interactions between molecules and plasmonic nanoparticles in general and FRET enhancement in particular.
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| 2. |
- Cider, L., et al.
(författare)
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Cross-Desorption of Differently Adsorbed Carbon-Monoxide on Pd Alpha-Al2o3 by Means of Acetylene
- 1991
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Ingår i: Journal of Molecular Catalysis. - 0304-5102. ; 67:3, s. 323-331
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Tidskriftsartikel (refereegranskat)abstract
- Cross-desorption of carbon monoxide on Pd/alpha-Al2O3 by means of acetylene was studied spectrophotometrically. Both linearly bonded and bridge-bonded carbon monoxide were found to cross-desorb rapidly, and the linearly bonded form was most easily cross-desorbed. It could not be shown whether the cross-desorption of bridge-bonded carbon monoxide proceeded via the linearly bonded form or not. The role played by surface carbonate or some adsorbed species related to carbon monoxide giving absorption bands at 1630, 1510 and 1420 cm-1 is not fully understood at present.
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| 3. |
- Edhborg, Fredrik, 1990, et al.
(författare)
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Triplet States of Cyanostar and Its Anion Complexes
- 2023
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Ingår i: Journal of Physical Chemistry A. - 1089-5639 .- 1520-5215. ; 127:28, s. 5841-5850
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Tidskriftsartikel (refereegranskat)abstract
- The design of advanced optical materials based on triplet states requires knowledge of the triplet energies of the molecular building blocks. To this end, we report the triplet energy of cyanostar (CS) macrocycles, which are the key structure-directing units of small-molecule ionic isolation lattices (SMILES) that have emerged as programmable optical materials. Cyanostar is a cyclic pentamer of covalently linked cyanostilbene units that form π-stacked dimers when binding anions as 2:1 complexes. The triplet energies, ET, of the parent cyanostar and its 2:1 complex around PF6- are measured to be 1.96 and 2.02 eV, respectively, using phosphorescence quenching studies at room temperature. The similarity of these triplet energies suggests that anion complexation leaves the triplet energy relatively unchanged. Similar energies (2.0 and 1.98 eV, respectively) were also obtained from phosphorescence spectra of the iodinated form, I-CS, and of complexes formed with PF6- and IO4- recorded at 85 K in an organic glass. Thus, measures of the triplet energies likely reflect geometries close to those of the ground state either directly by triplet energy transfer to the ground state or indirectly by using frozen media to inhibit relaxation. Density functional theory (DFT) and time-dependent DFT were undertaken on a cyanostar analogue, CSH, to examine the triplet state. The triplet excitation localizes on a single olefin whether in the single cyanostar or its π-stacked dimer. Restriction of the geometrical changes by forming either a dimer of macrocycles, (CSH)2, or a complex, (CSH)2·PF6-, reduces the relaxation resulting in an adiabatic energy of the triplet state of 2.0 eV. This structural constraint is also expected for solid-state SMILES materials. The obtained T1 energy of 2.0 eV is a key guide line for the design of SMILES materials for the manipulation of triplet excitons by triplet state engineering in the future.
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| 4. |
- Ghasemi, Shima, 1993, et al.
(författare)
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Pyrene Functionalized Norbornadiene-Quadricyclane Fluorescent Photoswitches: Characterization of their Spectral Properties and Application in Imaging of Amyloid Beta Plaques
- 2024
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Ingår i: Chemistry - A European Journal. - 1521-3765 .- 0947-6539. ; In Press
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Tidskriftsartikel (refereegranskat)abstract
- This study presents the synthesis and characterization of two fluorescent norbornadiene (NBD) photoswitches, each incorporating two conjugated pyrene units. Expanding on the limited repertoire of reported photoswitchable fluorescent NBDs, we explore their properties with a focus on applications in bioimaging of amyloid beta (Aβ) plaques. While the fluorescence emission of the NBD decreases upon photoisomerization, aligning with what has been previously reported, for the first time we observed luminescence after irradiation of the quadricyclane (QC) isomer. We deduce how the observed emission is induced by photoisomerization to the excited state of the parent isomer (NBD) which is then the emitting species. Thorough characterizations including NMR, UV-Vis, fluorescence, X-ray structural analysis and density functional theory (DFT) calculations provide a comprehensive understanding of these systems. Notably, one NBD-QC system exhibits exceptional durability. Additionally, these molecules serve as effective fluorescent stains targeting Aβ plaques in situ, with observed NBD/QC switching within the plaques. Molecular docking simulations explore NBD interactions with amyloid, unveiling novel binding modes. These insights mark a crucial advancement in the comprehension and design of future photochromic NBDs for bioimaging applications and beyond, emphasizing their potential in studying and addressing protein aggregates.
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| 5. |
- Albinsson, Bo, 1963, et al.
(författare)
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Anti, ortho, and gauche conformers of perfluoro-n-butane: Matrix-isolation IR spectra and calculations
- 1996
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Ingår i: Journal of Physical Chemistry. - 0022-3654. ; 100:9, s. 3418-3429
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Tidskriftsartikel (refereegranskat)abstract
- Nitrogen matrix-isolation IR spectra have been obtained for each of the three conformers of n-C4F10 (gauche, ortho, and anti) by trapping a hot conformer mixture on a cold CsI window and subsequent matrix annealing and spectral differencing. They were assigned by comparison with results of HF/6-31G* calculations, and the nature of the normal modes has been analyzed using the total energy distribution procedure. At the fully optimized MP2/6-31G* (frozen core) level, the CCCC dihedral angles and relative energies (kcal/mol) are 54.2 degrees and 0.68 (gauche), 94.8 degrees and 1.63 (ortho), and 165.5 degrees and 0 (anti). Single-point MP2/6-311G* (frozen core) relative energies at these geometries are 0.85, 2.12, and 0 kcal/mol, respectively. Only a minute amount of the ortho conformer is trapped in nitrogen matrix, and none in other matrices that were tried. A variation of the relative intensities of IR peaks of the gauche and anti conformers as a function of the temperature of the gas before deposition yields an ''average'' Delta H value of about 0.9 kcal/mol, with the anti conformer more stable. The temperature range covered was too small to reveal the expected bilinear nature of the van't Hoff plot.
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| 6. |
- Albinsson, Bo, 1963, et al.
(författare)
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Conformers of n-Si5Me12: A comparison of ab initio and molecular mechanics methods
- 1999
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Ingår i: Journal of Physical Chemistry A. - 1089-5639 .- 1520-5215. ; 103:14, s. 2184-2196
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Tidskriftsartikel (refereegranskat)abstract
- Optimized geometries of the conformers of permethylated linear pentasilane, n-Si5Me12, were calculated by the HF/3-21G*, MM3, MM2, and MM+ methods, which predict eight, nine, six, and six energetically distinct enantiomeric conformer pairs, respectively, at geometries representing various combinations of the anti (similar to 165 degrees), ortho (similar to 90 degrees), and gauche (similar to 55 degrees) SiSiSiSi dihedral angles in the backbone. The results of the MM2 and MM+ methods, based on the same force field, differ insignificantly. The barriers between conformers appear to be exaggerated by the molecular mechanics methods, particularly MM2. Contour maps showing the groundstate energy as a function of the full range of two backbone SiSiSiSi dihedral angles, with all other geometrical variables optimized, computed by each of the methods (only a limited range of angles near the anti,anti geometry in the case of HF/3-21G*) are compared with each other and with analogous results for a model compound, Si4Me10. Conformer interconversion paths are discussed, and two meso transition states for enantiomer interconversion have been located at the HF/3-21G* level of calculation. At the eight HF/3-21G* optimized geometries, single-point energies (HF/6-31G* and MP2/6-31G*) and vibrational frequencies (HF/3-21G*) were computed. The predicted IR and Raman spectra suggest that about half of the expected conformers will be identifiable by vibrational spectroscopy under conditions of matrix isolation. Relative conformer energies calculated by the MM2 and HF methods are similar and favor the anti dihedral angles over gauche and ortho, in agreement with results of solution experiments. Those calculated by the hIM3 and HF methods are similar to each other and favor both anti and gauche dihedral angles nearly equally over ortho, in agreement with indications provided by gas-phase experiments. A rationalization of these solvent effects is proposed. The energies of the conformers of Si4Me10 and Si3Me12 were used to set up a system of additive increments at the MM2, MM3, HF/3-21G*, HF/6-31G*, and MP2/6-31G* levels of calculation, which can be used to predict conformational energies of longer permethylated oligosilanes. An intrinsic energy value is assigned to each of the a, o, and g dihedral angles, and interaction energy values are assigned to each combination of two dihedral angles. The interaction values follow the expected rules in that equal twist sense is favored for adjacent aa, ag, oo, and gg pairs, whereas opposite twist sense is generally favored for adjacent so and go pairs. The MM3-derived set of increments has been tested against results computed for Si6Me14 and found to perform well.
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| 7. |
- Albinsson, Bo, 1963, et al.
(författare)
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Conformers of saturated chains: Matrix isolation, structure, IR and UV spectra of n-Si(4)Me(10)
- 1996
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Ingår i: Chemistry - A European Journal. - 1521-3765 .- 0947-6539. ; 2:5, s. 529-538
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Tidskriftsartikel (refereegranskat)abstract
- Infrared and ultraviolet spectra of the gauche and anti conformers of matrix-isolated permethyl-n-tetrasilane have been obtained separately by taking advantage of thermally induced gauche-to-anti conversion and of wavelength-selective photochemical destruction of either conformer. The resolved UV spectrum of the gauche conformer provides the first piece of experimental evidence in favor of the recently proposed reinterpretation of conformational effects on tetrasilane electronic states. According to this, it is not the energy but the intensity of the lowest singlet excitation that changes dramatically as the SiSiSiSi dihedral angle is varied, as a result of an avoided crossing between sigma sigma* and sigma pi* states. Implications for the general understanding of sigma conjugation in simple terms are discussed. Unconstrained MP2/6-31G* optimization predicts the existence of a third backbone conformer (ortho), with a dihedral angle of about 90 degrees. Its predicted (HF/3-21G*) mid-IR spectrum is indistinguishable from that of the gauche conformer, and the matrix-isolation spectra thus provide no evidence for or against its presence.
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| 8. |
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| 9. |
- Albinsson, Bo, 1963
(författare)
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Dual fluorescence from N-6,N-6-dimethyladenosine
- 1997
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Ingår i: Journal of the American Chemical Society. - 1520-5126 .- 0002-7863. ; 119:27, s. 6369-6375
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Tidskriftsartikel (refereegranskat)abstract
- The adenosine derivative N-6,N-6-dimethyladenosine (DMA) shows dual fluorescence in solvents of different polarity. In addition to the ''normal'' fluorescence at 330 nm, another band is observed at 500 nm. The long wavelength emission dominates in aprotic solvents but is dynamically quenched by protic solvents. Steady-state and lifetime measurements show that the emissions originate from two excited state species; the short wavelength emission is from the directly populated excited state which irreversibly isomerizes into the species responsible for the long wavelength emission. It is conceivable to assign the long wavelength emitting species to a twisted intramolecular charge transfer state (TICT). The fluorescence quantum yield of the short wavelength emission is approximately 4 x 10(-4) at room temperature and increases by three orders of magnitude when the temperature is lowered to 80 K in accordance with the behavior of normal nucleic acid bases. In contrast, the long wavelength fluorescence quantum yield is almost temperature independent. The different photophysical processes for DMA are summarized into a kinetic scheme where the temperature quenching of the short wavelength fluorescence is exclusively through isomerization into the long wavelength emitting species. Direct internal conversion to the ground state, commonly believed to be the dominant process for nonradiative deactivation of the DNA bases, makes a negligible contribution for DMA.
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| 10. |
- Albinsson, Bo, 1963, et al.
(författare)
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Electron and energy transfer in donor-acceptor systems with conjugated molecular bridges
- 2007
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Ingår i: Physical Chemistry Chemical Physics. - : Royal Society of Chemistry (RSC). - 1463-9084 .- 1463-9076. ; 9:44, s. 5847-5864
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Tidskriftsartikel (refereegranskat)abstract
- Electron and energy transfer reactions in covalently connected donor-bridge-acceptor assemblies are strongly dependent, not only on the donor-acceptor distance, but also on the electronic structure of the bridge. In this article we describe some well characterised systems where the bridges are π-conjugated chromophores, and where, specifically, the interplay between bridge length and energy plays an important role for the donor-acceptor electronic coupling. For any application that relies on the transport of electrons, for example molecule based solar cells or molecular scale electronics, it will be imperative to predict the electron transfer capabilities of different molecular structures. The potential difficulties with making such predictions and the lack of suitable models are also discussed. © the Owner Societies.
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