| 1. |
- Andersson, Jenny, 1976
(författare)
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Non-overlapping Germ-grain Models: Characteristics and Material Modelling
- 2005
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- We consider three different non--overlapping germ--grain models, two of which are constructed in a similar fashion. These two models are generalisations of Mat\'ern's hard--core models. In both cases we start with a homogeneous Poisson process and use the points as centres of convex sets, grains, of the same shape. The process is thinned so that no grains overlap. Two different thinning schemes result in the two models. The pair--correlation functions and the mark--correlation functions for both models are derived. The models are fitted to images of inclusions in cast iron. For one of the models above, if the thinning is performed independently of the grain sizes we show that the volume fraction is at most $1/2^d$ for dimension $d=1$ or $2$. If the thinning is performed dependently of the grain sizes, it is possible to achieve volume fraction arbitrarily close to one for any dimension. The third non--overlapping germ--grain model is a Voronoi tessellation. It is used as a model for the grain structure of the surface of a metal. As an example of this approach, we study the influence of grain structure on fatigue life. A crack growth model is applied to simulated grain structures. The conclusion is that the fatigue life increases, compared to a model with grains of equal size.
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| 2. |
- Andersson, Jenny, 1976
(författare)
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The influence of grain size variation on metal fatigue
- 2005
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Ingår i: International Journal of Fatigue. ; 27, s. 847-852
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Tidskriftsartikel (refereegranskat)abstract
- The aim of the present study is to investigate the influence of the variation of metal grain sizes on fatigue lives. The grain structure is simulated from a Poisson–Voronoi model and the short crack growth model of Navarro and de los Rios is applied. The resulting fatigue life decreased with increasing component size, probably reflecting the fact that with increasing number of grains there is a larger probability of finding a large grain where the crack starts. The standard deviation of the logarithm of the lives was in the order of 0.2–0.4, i.e. the variation in grain size explains only part of the observed variance in real fatigue data.
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| 3. |
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| 4. |
- Andersson, Jenny, 1976, et al.
(författare)
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The Volume Fraction of a Non-overlapping Germ-grain Model
- 2006
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Ingår i: Electronic Communications in Probability. - 1083-589X. ; 11, s. 78-88
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Tidskriftsartikel (refereegranskat)abstract
- We discuss the volume fraction of a model of non--overlapping convex grains. It is obtained from thinning a Poisson process where each point has a weight and is the centre of a grain, by removing any grain that is overlapped by one of larger or equal weight. In the limit as the intensity of the Poisson process tends to infinity, the model can be identified with the intact grains in the dead leaves model if the weights are independent of the grain sizes. In this case we can show that the volume fraction is at most $1/2^d$ for $d=1$ or $2$ if the shape is fixed, but the size and the orientation are random. The upper bound is achieved for centrally symmetric sets of the same size and orientation. For general $d$ we can show the upper bound, $1/2^d$, for spherical grains with two--point radius distribution. If dependence between weight and size is allowed, it is possible to achieve a volume fraction arbitrarily close to one.
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| 5. |
- Andersson, Maria, 1976, et al.
(författare)
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Mild renal ischemia-reperfusion reduces charge and size selectivity of the glomerular barrier
- 2007
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Ingår i: American Journal of Physiology Renal Physiology. - : American Physiological Society. - 0363-6127 .- 1931-857X .- 1522-1466. ; 292:6
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Tidskriftsartikel (refereegranskat)abstract
- Despite recent discoveries of molecules in podocytes, the mechanisms behind most conditions of proteinuria are still poorly understood. To understand more about this delicate barrier, we studied the functional and morphological effects of mild (15 min) renal ischemia-reperfusion injury (IRI). Renal function was studied in rats in vivo, followed by a more detailed analysis of the glomerular barrier in cooled (8 degrees C) isolated perfused kidneys (cIPK). Renal blood flow was quickly restored, whereas the glomerular filtration rate remained halved 30 min after IRI. Tubular cell activity was intact as judged from the unaffected Cr-EDTA U/P concentration ratio. In vivo, the fractional clearance (theta) for albumin increased 16 times. In rats subjected to cIPK starting 30 min after in vivo IRI, theta(albumin) was 15 times and theta(Ficoll_36angstroms) 1.8 times higher than in control cIPKs. According to the heterogeneous charged fiber model, IRI reduced the fiber charge density to 38% of control (P < 0.01, n = 7). Morphometric analysis with electron microscopy did not reveal any changes in the podocytes or the glomerular basement membrane (GBM) after IRI, suggesting more subtle changes of the GBM and/or the endothelial glycocalyx. We conclude that mild renal IRI induces formation of reactive oxygen species, massive proteinuria, and loss of charged fibers with no apparent change in morphology. These novel findings stress the importance of other components of the barrier, such as proteoglycans produced by the glomerular cells, and provide a tentative explanation for the mechanisms behind proteinuria in glomerulonephritis, for example.
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| 6. |
- Bartels, Pia, et al.
(författare)
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Allochthonous Organic Matter Supports Benthic but Not Pelagic Food Webs in Shallow Coastal Ecosystems
- 2018
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Ingår i: Ecosystems (New York. Print). - : Springer. - 1432-9840 .- 1435-0629. ; 21:7, s. 1459-1470
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Tidskriftsartikel (refereegranskat)abstract
- Rivers transport large amounts of allochthonous organic matter (OM) to the ocean every year, but there are still fundamental gaps in how allochthonous OM is processed in the marine environment. Here, we estimated the relative contribution of allochthonous OM (allochthony) to the biomass of benthic and pelagic consumers in a shallow coastal ecosystem in the northern Baltic Sea. We used deuterium as a tracer of allochthony and assessed both temporal variation (monthly from May to August) and spatial variation (within and outside river plume). We found variability in allochthony in space and time and across species, with overall higher values for zoobenthos (26.2 +/- 20.9%) than for zooplankton (0.8 +/- 0.3%). Zooplankton allochthony was highest in May and very low during the other months, likely as a result of high inputs of allochthonous OM during the spring flood that fueled the pelagic food chain for a short period. In contrast, zoobenthos allochthony was only lower in June and remained high during the other months. Allochthony of zoobenthos was generally higher close to the river mouth than outside of the river plume, whereas it did not vary spatially for zooplankton. Last, zoobenthos allochthony was higher in deeper than in shallower areas, indicating that allochthonous OM might be more important when autochthonous resources are limited. Our results suggest that climate change predictions of increasing inputs of allochthonous OM to coastal ecosystems may affect basal energy sources supporting coastal food webs.
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| 7. |
- Creed, Irena F., et al.
(författare)
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Global change-driven effects on dissolved organic matter composition : Implications for food webs of northern lakes
- 2018
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Ingår i: Global Change Biology. - : Wiley. - 1354-1013 .- 1365-2486. ; 24:8, s. 3692-3714
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Forskningsöversikt (refereegranskat)abstract
- Northern ecosystems are experiencing some of the most dramatic impacts of global change on Earth. Rising temperatures, hydrological intensification, changes in atmospheric acid deposition and associated acidification recovery, and changes in vegetative cover are resulting in fundamental changes in terrestrial-aquatic biogeochemical linkages. The effects of global change are readily observed in alterations in the supply of dissolved organic matter (DOM)-the messenger between terrestrial and lake ecosystems-with potentially profound effects on the structure and function of lakes. Northern terrestrial ecosystems contain substantial stores of organic matter and filter or funnel DOM, affecting the timing and magnitude of DOM delivery to surface waters. This terrestrial DOM is processed in streams, rivers, and lakes, ultimately shifting its composition, stoichiometry, and bioavailability. Here, we explore the potential consequences of these global change-driven effects for lake food webs at northern latitudes. Notably, we provide evidence that increased allochthonous DOM supply to lakes is overwhelming increased autochthonous DOM supply that potentially results from earlier ice-out and a longer growing season. Furthermore, we assess the potential implications of this shift for the nutritional quality of autotrophs in terms of their stoichiometry, fatty acid composition, toxin production, and methylmercury concentration, and therefore, contaminant transfer through the food web. We conclude that global change in northern regions leads not only to reduced primary productivity but also to nutritionally poorer lake food webs, with discernible consequences for the trophic web to fish and humans.
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| 8. |
- Dinér, Peter, 1976, et al.
(författare)
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Design, synthesis, and characterization of a highly effective Hog1 inhibitor: a powerful tool for analyzing MAP kinase signaling in yeast.
- 2011
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Ingår i: PloS one. - : Public Library of Science (PLoS). - 1932-6203. ; 6:5
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Tidskriftsartikel (refereegranskat)abstract
- The Saccharomyces cerevisiae High-Osmolarity Glycerol (HOG) pathway is a conserved mitogen-activated protein kinase (MAPK) signal transduction system that often serves as a model to analyze systems level properties of MAPK signaling. Hog1, the MAPK of the HOG-pathway, can be activated by various environmental cues and it controls transcription, translation, transport, and cell cycle adaptations in response to stress conditions. A powerful means to study signaling in living cells is to use kinase inhibitors; however, no inhibitor targeting wild-type Hog1 exists to date. Herein, we describe the design, synthesis, and biological application of small molecule inhibitors that are cell-permeable, fast-acting, and highly efficient against wild-type Hog1. These compounds are potent inhibitors of Hog1 kinase activity both in vitro and in vivo. Next, we use these novel inhibitors to pinpoint the time of Hog1 action during recovery from G(1) checkpoint arrest, providing further evidence for a specific role of Hog1 in regulating cell cycle resumption during arsenite stress. Hence, we describe a novel tool for chemical genetic analysis of MAPK signaling and provide novel insights into Hog1 action.
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