| 1. |
- Antonelli, Alexandre, 1978, et al.
(författare)
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Conceptual and empirical advances in Neotropical biodiversity research
- 2018
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Ingår i: PeerJ. - : PeerJ. - 2167-8359. ; 2018:10
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Tidskriftsartikel (refereegranskat)abstract
- The unparalleled biodiversity found in the American tropics (the Neotropics) has attracted the attention of naturalists for centuries. Despite major advances in recent years in our understanding of the origin and diversification of many Neotropical taxa and biotic regions, many questions remain to be answered. Additional biological and geological data are still needed, as well as methodological advances that are capable of bridging these research fields. In this review, aimed primarily at advanced students and early-career scientists, we introduce the concept of "trans-disciplinary biogeography," which refers to the integration of data from multiple areas of research in biology (e.g., community ecology, phylogeography, systematics, historical biogeography) and Earth and the physical sciences (e.g., geology, climatology, palaeontology), as a means to reconstruct the giant puzzle of Neotropical biodiversity and evolution in space and time. We caution against extrapolating results derived from the study of one or a few taxa to convey general scenarios of Neotropical evolution and landscape formation. We urge more coordination and integration of data and ideas among disciplines, transcending their traditional boundaries, as a basis for advancing tomorrow's ground-breaking research. Our review highlights the great opportunities for studying the Neotropical biota to understand the evolution of life.
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| 2. |
- Azevedo, Josué, et al.
(författare)
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Contrasting patterns of phylogenetic turnover in amphibians and reptiles are driven by environment and geography in Neotropical savannas
- 2021
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Ingår i: Journal of Biogeography. - : Wiley. - 0305-0270 .- 1365-2699. ; 48:8, s. 2008-2021
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Tidskriftsartikel (refereegranskat)abstract
- Aim: Cross-taxonomic congruence in biodiversity patterns is key to understanding the main drivers of community structure, for biogeographical regionalization and to guide conservation. We aim to map the patterns of phylogenetic turnover and disentangle the geographical and environmental factors that drive the phylogenetic composition of distinct faunal assemblages. Location: The Cerrado savannas of South America. Taxa: Reptiles and amphibians. Methods: We measured the proportion of phylogenetic branches shared among sites (i.e. phylogenetic turnover) using presence-absence matrices for all species in the Cerrado and for endemics only, including only well-sampled localities from previously compiled inventories. We then tested whether phylogenetic turnover is different from null expectations based on taxonomic turnover. We used generalized dissimilarity modelling (GDM) to test whether geography, topography, soil or climate best explain phylogenetic turnover. Finally, we mapped the observed and the GDM-predicted clustering of phylogenetic turnover to assess geographical congruence between reptiles and amphibians. Results: For all reptiles, geographical distance is the most important factor explaining phylogenetic turnover, whereas for endemic reptiles and amphibians, in general, a set of climatic variables and relief roughness are more important. We did not find any significant correlation between the phylogenetic turnover of reptiles and amphibians, as evidenced by non-congruent phylogenetic clustering and by different responses to geographical and environmental gradients. Main conclusions: The different relationships of phylogenetic turnover of reptiles and amphibians to geographical and environmental distances have ultimately shaped the phylogenetic regionalization of these two groups. This incongruence indicates the differential importance of niche filtering, dispersal limitation and the influence of neighbouring biomes in the regionalization of different groups of organisms. Therefore, diversity patterns of one group should ideally not be used as a surrogate to map general patterns or to understand the drivers of diversity of other co-occurring groups. Thus, conservation efforts need to be designed and implemented for each organismal group. © 2021 John Wiley & Sons Ltd
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| 3. |
- Azevedo, Josué, et al.
(författare)
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Deforestation limits evolutionary rescue under climate change in Amazonian lizards
- 2024
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Ingår i: DIVERSITY AND DISTRIBUTIONS. - 1366-9516 .- 1472-4642. ; 30:7
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Tidskriftsartikel (refereegranskat)abstract
- AimThe impact of climate change on biodiversity is often analysed under a stable evolutionary perspective focused on whether species can currently tolerate warmer climates. However, species may adapt to changes, and particularly under conditions of low habitat fragmentation, standing adaptive genetic variation can spread across populations tracking changing climates, increasing the potential for evolutionary rescue. Here, our aim is to integrate genomic data, niche modelling and landscape ecology to predict range shifts and the potential for evolutionary rescue.LocationThe megadiverse Amazonian rainforest.MethodsWe use genome-environment association analyses to search for candidate loci under environmental selection, while accounting for neutral genetic variation in a widespread Amazonian whiptail lizard (Teiidae: Kentropyx calcarata). We then model the distribution of individuals with genotypes adapted to different climate conditions. We predict range shifts for each genotype in distinct future climate change scenarios by integrating this information with dispersal constraints based on predicted scenarios of forest cover across Amazonia. The predicted ranges of each genotype were then overlapped to infer the potential for evolutionary rescue.ResultsWe find that the potential for evolutionary rescue and, therefore, a smaller degree of range loss buffering extinction risk in the future is considerably high, provided that current forest cover is retained and climate change is not extreme. However, under extreme environmental change scenarios, range loss will be high in central and southern Amazonia, irrespective of the degree of deforestation.Main ConclusionsOur results suggest that protecting the Amazonian rainforest against further deforestation and mitigating climate change to moderate scenarios until 2070 could foster evolutionary rescue of ectothermic organisms. These actions could prevent substantial biodiversity loss in Amazonia, emphasizing the importance of understanding species adaptability in maintaining biodiversity.
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| 4. |
- Azevedo, Josué, et al.
(författare)
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Museums and cradles of diversity are geographically coincident for narrowly distributed Neotropical snakes
- 2020
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Ingår i: Ecography. - : Wiley. - 0906-7590 .- 1600-0587. ; 43:2, s. 328-339
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Tidskriftsartikel (refereegranskat)abstract
- Factors driving the spatial configuration of centres of endemism have long been a topic of broad interest and debate. Due to different eco-evolutionary processes, these highly biodiverse areas may harbour different amounts of ancient and recently diverged organisms (paleo- and neo-endemism, respectively). Patterns of endemism still need to be measured at distinct phylogenetic levels for most clades and, consequently, little is known about the distribution, the age and the causes of such patterns. Here we tested for the presence of centres with high phylogenetic endemism (PE) in the highly diverse Neotropical snakes, testing the age of these patterns (paleo- or neo-endemism), and the presence of PE centres with distinct phylogenetic composition. We then tested whether PE is predicted by topography, by climate (seasonality, stability, buffering and relictualness), or biome size. We found that most areas of high PE for Neotropical snakes present a combination of both ancient and recently diverged diversity, which is distributed mostly in the Caribbean region, Central America, the Andes, the Atlantic Forest and on scattered highlands in central Brazil. Turnover of lineages is higher across Central America, resulting in more phylogenetically distinct PE centres compared to South America, which presents a more phylogenetically uniform snake fauna. Finally, we found that elevational range (topographic roughness) is the main predictor of PE, especially for paleo-endemism, whereas low paleo-endemism levels coincide with areas of high climatic seasonality. Our study highlights the importance of mountain systems to both ancient and recent narrowly distributed diversity. Mountains are both museums and cradles of snake diversity in the Neotropics, which has important implications for conservation in this region.
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| 5. |
- Azevedo, Josué
(författare)
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Origin, evolution and biodiversity of the Neotropical herpetofauna: patterns and processes of the world’s richest and most threatened biota
- 2019
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- The biological diversity of tropical America (the Neotropics) is astonishing. However, even among terrestrial vertebrates, most biogeographical patterns are not fully described nor understood, especially for many Neotropical reptiles and amphibians (the herpetofauna). To understand the evolutionary processes that gave rise to this incredible diversity, it is necessary to map the geographical distribution of multiple species. Furthermore, biogeographical analyses that integrate phylogenetic information provide the means to disentangle the roles of geography and environment in shaping biodiversity patterns. Herpetofaunal groups are very diverse in the region, occupying a wide range of habitats and niches, making them key organisms to understanding the origins of Neotropical biodiversity. My goal in this thesis is to understand biogeographical patterns and processes underlying this diversity. For this, I aim to: (1) provide novel taxonomic assignments and mapping of the distribution of snakes in the region, (2) test the role of geographical and environmental distances in the patterns of phylogenetic regionalization in reptiles and amphibians in the Cerrado savannas, (3) map endemism patterns for all Neotropical snakes, (4) investigate the origins and assembly of Neotropical savannas, and (5) apply biodiversity indices to guide conservation. The results indicate that in the Cerrado savannas, geography and environment affect the distribution of reptile and amphibian lineages in different ways, resulting in distinct patterns of phylogenetic regionalization. Also, biodiversity patterns in the Cerrado region were shaped in the context of a much more recent appearance of savanna ecosystems in comparison to tropical forests, as shown from several lines of evidence. The main contribution of this thesis is the mapping of narrowly distributed snake diversity in Central America, the Andean mountains, the Caribbean Islands, and the Atlantic Forest. The topographical complexity of these regions is the main predictor of both ancient and recent endemism. By describing diversity patterns of the Neotropical herpetofauna, I hope to contribute to the understanding of critical biogeographical patterns and processes underlying one of the world’s richest biotas.
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| 6. |
- Farooq, Harith, 1986, et al.
(författare)
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Mapping Africa's Biodiversity: More of the Same Is Just Not Good Enough
- 2021
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Ingår i: Systematic Biology. - : Oxford University Press (OUP). - 1063-5157 .- 1076-836X. ; 70:3, s. 623-633
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Tidskriftsartikel (refereegranskat)abstract
- Species distribution data are fundamental to the understanding of biodiversity patterns and processes. Yet, such data are strongly affected by sampling biases, mostly related to site accessibility. The understanding of these biases is therefore crucial in systematics, biogeography, and conservation. Here we present a novel approach for quantifying sampling effort and its impact on biodiversity knowledge, focusing on Africa. In contrast to previous studies assessing sampling completeness (percentage of species recorded in relation to predicted), we investigate whether the lack of knowledge of a site attracts scientists to visit these areas and collect samples of species. We then estimate the time required to sample 90% of the continent under a Weibull distributed biodiversity sampling rate and the number of sampling events required to record 50% of the species. Using linear and spatial regression models, we show that previous sampling has been strongly influencing the resampling of areas, attracting repeated visits. This bias has existed for over two centuries, has increased in recent decades, and is most pronounced among mammals. It may take between 172 and 274 years, depending on the group, to achieve at least one sampling event per grid cell in the entire continent. Just one visit will, however, not be enough: in order to record 50% of the current diversity, it will require at least 12 sampling events for amphibians, 13 for mammals, and 27 for birds. Our results demonstrate the importance of sampling areas that lack primary biodiversity data and the urgency with which this needs to be done. Current practice is insufficient to adequately classify and map African biodiversity; it can lead to incorrect conclusions being drawn from biogeographic analyses and can result in misleading and self-reinforcing conservation priorities.
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| 7. |
- Farooq, Harith, 1986, et al.
(författare)
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WEGE: A new metric for ranking locations for biodiversity conservation
- 2020
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Ingår i: Diversity and Distributions. - : Wiley. - 1366-9516 .- 1472-4642.
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Tidskriftsartikel (refereegranskat)abstract
- Aim Effective policymaking for biological conservation requires the identification and ranking of the most important areas for protection or management. One of the most frequently used systems for selecting priority areas is the Key Biodiversity Areas (hereafter KBAs), developed by the International Union for Conservation of Nature (IUCN). However, KBAs cannot be used to rank areas, potentially limiting their use when limited funding is available. To tackle this shortcoming and facilitate spatial prioritization, here we develop and validate the "WEGE index" (Weighted Endemism including Global Endangerment index), consisting of an adaptation of the EDGE score (Evolutionarily Distinct and Globally Endangered). WEGE allows the ranking of any set of locations according to the KBA guidelines and on a continuous scale. Location Global. Methods We calculated the EDGE score, Weighted Endemism, Evolutionary distinctiveness, Extinction risk and our newly developed WEGE index for all terrestrial species of amphibians, mammals and birds accessed by IUCN. We then compared the performance of each of those five indices at prioritizing areas according to the KBA guidelines. Results We found that for all taxa surveyed, WEGE was consistently better at identifying areas that trigger KBA status. Main conclusions In our analyses, WEGE outperformed all other methods and metrics designed for similar purposes. It can serve as a robust evidence-based methodology to prioritize among otherwise equally qualified sites according to the KBA categories. WEGE can therefore support transparent, evidence-based and biologically meaningful decision-making for conservation priorities.
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| 8. |
- Gomes, D. F., et al.
(författare)
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Taxonomic revision of the genus Xenopholis Peters, 1869 (Serpentes: Dipsadidae): Integrating morphology with ecological niche
- 2020
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Ingår i: PLoS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 15:12
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Tidskriftsartikel (refereegranskat)abstract
- A reliable identification and delimitation of species is an essential pre-requisite for many fields of science and conservation. The Neotropical herpetofauna is the world's most diverse, including many taxa of uncertain or debated taxonomy. Here we tackle one such species complex, by evaluating the taxonomic status of species currently allocated in the snake genus Xenopholis (X. scalaris, X. undulatus, and X. werdingorum). We base our conclusions on concordance between quantitative (meristic and morphometric) and qualitative (color pattern, hemipenes and skull features) analyses of morphological characters, in combination with ecological niche modeling. We recognize all three taxa as valid species and improve their respective diagnosis, including new data on color in life, pholidosis, bony morphology, and male genitalia. We find low overlap among the niches of each species, corroborating the independent source of phenotypic evidence. Even though all three species occur in the leaf litter of distinct forested habitats, Xenopholis undulatus is found in the elevated areas of the Brazilian Shield (Caatinga, Cerrado and Chaco), whereas X. scalaris occurs in the Amazon and Atlantic rainforests, and X. werdingorum in the Chiquitanos forest and Pantanal wetlands. We discuss the disjunct distribution between Amazonian and Atlantic Forest snake species in the light of available natural history and ecological aspects. This study shows the advantages of combining multiple data sources for reliable identification and circumscription of ecologically similar species.
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| 9. |
- Nogueira, C. C., et al.
(författare)
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Atlas of Brazilian Snakes: Verified Point-Locality Maps to Mitigate the Wallacean Shortfall in a Megadiverse Snake Fauna
- 2019
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Ingår i: South American Journal of Herpetology. - : Brazilian Herpetological Society. - 1808-9798. ; 14
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Tidskriftsartikel (refereegranskat)abstract
- Accurate and detailed species distribution maps are fundamental for documenting and interpreting biological diversity. For snakes, an ecologically diverse group of reptiles, syntheses and detailed data on distribution patterns remain scarce. We present the first comprehensive collection of detailed, voucher-based, point-locality, range maps for all described and documented Brazilian snakes, with the major aim of mitigating the Wallacean shortfall and as a contribution towards a better understanding of this rich, threatened, and poorly studied megadiverse fauna. We recorded a total of 412 snake species in Brazil on the basis of an extensive and verified point-locality database of 163,498 entries and 75,681 unique records (available here as Online Supporting Information). Our results reveal previously undocumented patterns of distribution, sampling effort, richness, and endemism levels, resulting in a more objective view of snake diversity in the Neotropics. Apart from these achievements, we understand that the most relevant and enduring contribution of the present atlas is to stimulate researchers to publish corrections, additions, and new discoveries.
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| 10. |
- Oyebanji, Oyetola O., et al.
(författare)
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Biogeographic patterns and environmental drivers of species richness in the globally distributed Millettioid/Phaseoloid clade (Fabaceae, subfamily Papilionoideae)
- 2023
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Ingår i: FRONTIERS IN ECOLOGY AND EVOLUTION. - 2296-701X. ; 11
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Tidskriftsartikel (refereegranskat)abstract
- Introduction: The Millettioid/Phaseoloid (MP) clade of Fabaceae is globally distributed, economically important, and highly diverse, making it an attractive system for studying biogeographic and macroecological patterns at a global scale. We conducted the first global macroecological study to map and explore the environmental drivers of the MP clade's species richness patterns. Methods: We compiled 116,212 species occurrences (161 genera) for the MP clade and 20 environmental variables (19 bioclimatic variables and elevation). Geospatial analyses were performed to estimate species richness patterns and biogeographic heterogeneity. The effects of environmental variables on the species richness of the MP clade were measured through multiple regression models. Results: Our study identified the megathermal regions as hotspots of species richness for the MP clade. While species distributions and richness largely fit the latitudinal diversity gradient pattern, there was a significant negative relationship between the species richness of the MP clade along the latitude and longitude. The Afrotropic biogeographic realm had the highest alpha diversity (similar to 36%); in terms of biome types, tropical and subtropical moist broadleaf forests had the highest alpha diversity (25%), while the beta diversity revealed a high dispersal rate and habitat tracking. Furthermore, the species richness was positively influenced by multiple climatic factors, with the mean diurnal range of temperatures and precipitation in the warmest quarter having strongest influence. Discussion: Overall, the staggering species richness patterns could be explained by multiple diversity gradient hypotheses. Particularly, colder climates play a crucial role in shaping the species richness pattern by limiting the ecological opportunities for MP clade species in the higher latitudes of the Northern Hemisphere. This suggests that the species richness patterns of the MP clade can be described as "when dispersal meets adaptation." Our study provides a new basis for identifying priority regions for conservation of legumes.
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