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- Martin-Sanchez, F., et al.
(författare)
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Synergy between medical informatics and bioinformatics : Facilitating genomic medicine for future health care
- 2004
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Ingår i: Journal of Biomedical Informatics. - : Elsevier BV. - 1532-0464 .- 1532-0480. ; 37:1, s. 30-42
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Tidskriftsartikel (refereegranskat)abstract
- In this paper, we review the results of BIOINFOMED, a study funded by the European Commission (EC) with the purpose to analyse the different issues and challenges in the area where Medical Informatics and Bioinformatics meet. Traditionally, Medical Informatics has been focused on the intersection between computer science and clinical medicine, whereas Bioinformatics have been predominantly centered on the intersection between computer science and biological research. Although researchers from both areas have occasionally collaborated, their training, objectives and interests have been quite different. The results of the Human Genome and related projects have attracted the interest of many professionals, and introduced new challenges that will transform biomedical research and health care. A characteristic of the 'post genomic' era will be to correlate essential genotypic information with expressed phenotypic information. In this context, Biomedical Informatics (BMI) has emerged to describe the technology that brings both disciplines (BI and MI) together to support genomic medicine. In recognition of the dynamic nature of BMI, institutions such as the EC have launched several initiatives in support of a research agenda, including the BIOINFOMED study.
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| 3. |
- Heap, Michael J., et al.
(författare)
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The thermal properties of porous andesite
- 2020
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Ingår i: Journal of Volcanology and Geothermal Research. - : ELSEVIER. - 0377-0273 .- 1872-6097. ; 398
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Tidskriftsartikel (refereegranskat)abstract
- The thermal properties of volcanic rocks are crucial to accurately model heat transfer in volcanoes and in geothermal systems located within volcanic deposits. Here we provide laboratory measurements of thermal conductivity and thermal diffusivity for variably porous andesites from Mt. Ruapehu (New Zealand) and variably altered basaltic-andesites from Merapi volcano (Indonesia) measured at ambient laboratory pressure and temperature using the transient hot-strip method. The specific heat capacity of each sample was then calculated using these measured values and the bulk sample density. Thermal conductivity and thermal diffusivity decrease as a function of increasing porosity, but specific heat capacity does not vary systematically with porosity. For a given porosity, saturation with water increases thermal conductivity and specific heat capacity, but decreases thermal diffusivity. Measurements on samples from Merapi volcano show that, compared to the unaltered samples from Mt. Ruapehu, hydrothermal alteration deceases thermal conductivity and thermal diffusivity, and increases specific heat capacity. We use an effective medium approach to parameterise these data, showing that when the porosity and pore-fluid properties are scaled for, the measured values agree well with theoretical predictions. We find that despite the microstructural complexity of the studied andesites, porosity is the principal parameter dictating their thermal properties. To understand whether the measured changes in thermal properties are sufficient to influence natural processes, we model heat transfer from magma to the surrounding host-rock by solving Fick's second law cast in 1D Cartesian (dyke geometry) and cylindrical (conduit geometry) coordinates. We provide models for different host-rock porosities (0-0.6), different initial magmatic temperatures (800-1200 degrees C), and different levels of host-rock alteration. Our modelling shows how the cooling of a dyke and conduit is slowed by a higher host-rock porosity and by increased hydrothermal alteration. The thermal properties provided herein can help improve modelling designed to inform on volcanic and geothermal processes. (C) 2020 Elsevier B.V. All rights reserved.
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| 7. |
- DEGOULET, P, et al.
(författare)
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THE HELIOS MEDICAL SOFTWARE ENGINEERING ENVIRONMENT
- 1994
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Ingår i: COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE. - : ELSEVIER SCI PUBL IRELAND LTD. - 0169-2607. ; 45:1-2, s. 91-95
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- The aim of the HELIOS project is to create an integrated Software Engineering Environment (SEE) to facilitate the development and maintenance of medical applications. HELIOS is made of a set of software components, communicating through a software bus cal
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| 8. |
- Heap, Michael J., et al.
(författare)
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The tensile strength of hydrothermally altered volcanic rocks
- 2022
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Ingår i: Journal of Volcanology and Geothermal Research. - : Elsevier. - 0377-0273 .- 1872-6097. ; 428
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Tidskriftsartikel (refereegranskat)abstract
- The tensile strength of volcanic rocks is an important parameter for understanding and modelling a wide range of volcanic processes, and in the development of strategies designed to optimise energy production in volcanic geothermal reservoirs. However, despite the near-ubiquity of hydrothermal alteration at volcanic and geothermal systems, values of tensile strength for hydrothermally altered volcanic rocks are sparse. Here, we present an experimental study in which we measured the tensile strength of variably altered volcanic rocks. The alteration of these rocks, quantified as the weight percentage of secondary (alteration) minerals, varied from 6 to 62.8 wt%. Our data show that tensile strength decreases as a function of porosity, in agreement with previous studies, and as a function of alteration. We fit existing theoretical constitutive models to our data so that tensile strength can be estimated for a given porosity, and we provide a transformation of these models such that they are a function of alteration. However, because porosity and alteration influence each other, it is challenging to untangle their individual contributions to the measured reduction in tensile strength. Our new data and previously published data suggest that porosity exerts a first-order role on the tensile strength of volcanic rocks. Based on our data and observations, we also suggest that (1) alteration likely decreases tensile strength if associated with mineral dissolution, weak secondary minerals (such as clays), and an increase in microstructural heterogeneity and (2) alteration likely increases tensile strength if associated with pore- and crack-filling mineral precipitation. Therefore, we conclude that both alteration intensity and alteration type likely influence tensile strength. To highlight the implications of our findings, we provide discrete element method modelling which shows that, following the pressurisation of a dyke, the damage within weak hydrothermally altered host-rock is greater and more widespread than for strong hydrothermally altered host-rock. Because the rocks in volcanic and geothermal settings are likely to be altered, our results suggest that future modelling should consider the tensile strength of hydrothermally altered volcanic rocks.
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| 9. |
- Heap, Michael J., et al.
(författare)
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Whole-rock oxygen isotope ratios as a proxy for the strength and stiffness of hydrothermally altered volcanic rocks
- 2022
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Ingår i: Bulletin of Volcanology. - : Springer Nature. - 0258-8900 .- 1432-0819. ; 84:8
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Tidskriftsartikel (refereegranskat)abstract
- Hydrothermal alteration is considered to increase the likelihood of dome or flank collapse by compromising stability. Understanding how such alteration influences rock properties, and providing independent metrics for alteration that can be used to estimate these parameters, is therefore important to better assess volcanic hazards and mitigate risk. We explore the possibility of using whole-rock delta O-18 and delta D values and water contents, metrics that can potentially track alteration, to estimate the strength (compressive and tensile) and Young's modulus (i.e. "stiffness") of altered (acid-sulphate) volcanic rocks from La Soufriere de Guadeloupe (Eastern Caribbean). The delta O-18 values range from 5.8 to 13.2 parts per thousand, delta D values from - 151 to - 44 parts per thousand, and water content from 0.3 to 5.1 wt%. We find that there is a good correlation between delta O-18 values and laboratory-measured strength and Young's modulus, but that these parameters do not vary systematically with delta D or water content (likely due to their pre-treatment at 200 degrees C). Empirical linear relationships that allow strength and Young's modulus to be estimated using delta O-18 values are provided using our new data and published data for Merapi volcano (Indonesia). Our study highlights that delta O-18 values can be used to estimate the strength and Young's modulus of volcanic rocks, and could therefore be used to provide parameters for volcano stability modelling. One advantage of this technique is that delta O-18 only requires a small amount of material, and can therefore provide rock property estimates in scenarios where material is limited, such as borehole cuttings or when sampling large blocks is impracticable.
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| 10. |
- Trabelsi, M. S., et al.
(författare)
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Farnesoid X receptor inhibits glucagon-like peptide-1 production by enteroendocrine L cells
- 2015
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 6
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Tidskriftsartikel (refereegranskat)abstract
- Bile acids are signalling molecules, which activate the transmembrane receptor TGR5 and the nuclear receptor FXR. BA sequestrants (BAS) complex bile acids in the intestinal lumen and decrease intestinal FXR activity. The BAS-BA complex also induces glucagon-like peptide-1 (GLP-1) production by L cells which potentiates beta-cell glucose-induced insulin secretion. Whether FXR is expressed in L cells and controls GLP-1 production is unknown. Here, we show that FXR activation in L cells decreases proglucagon expression by interfering with the glucose-responsive factor Carbohydrate-Responsive Element Binding Protein (ChREBP) and GLP-1 secretion by inhibiting glycolysis. In vivo, FXR deficiency increases GLP-1 gene expression and secretion in response to glucose hence improving glucose metabolism. Moreover, treatment of ob/ob mice with the BAS colesevelam increases intestinal proglucagon gene expression and improves glycaemia in a FXR-dependent manner. These findings identify the FXR/GLP-1 pathway as a new mechanism of BA control of glucose metabolism and a pharmacological target for type 2 diabetes.
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