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- Smedsrud, P. H., et al.
(författare)
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Kvasir-Capsule, a video capsule endoscopy dataset
- 2021
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Ingår i: Scientific Data. - : Springer Science and Business Media LLC. - 2052-4463. ; 8:1
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Tidskriftsartikel (refereegranskat)abstract
- Artificial intelligence (AI) is predicted to have profound effects on the future of video capsule endoscopy (VCE) technology. The potential lies in improving anomaly detection while reducing manual labour. Existing work demonstrates the promising benefits of AI-based computer-assisted diagnosis systems for VCE. They also show great potential for improvements to achieve even better results. Also, medical data is often sparse and unavailable to the research community, and qualified medical personnel rarely have time for the tedious labelling work. We present Kvasir-Capsule, a large VCE dataset collected from examinations at a Norwegian Hospital. Kvasir-Capsule consists of 117 videos which can be used to extract a total of 4,741,504 image frames. We have labelled and medically verified 47,238 frames with a bounding box around findings from 14 different classes. In addition to these labelled images, there are 4,694,266 unlabelled frames included in the dataset. The Kvasir-Capsule dataset can play a valuable role in developing better algorithms in order to reach true potential of VCE technology.
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| 2. |
- Kvaerner, A. S., et al.
(författare)
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The CRCbiome study: a large prospective cohort study examining the role of lifestyle and the gut microbiome in colorectal cancer screening participants
- 2021
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Ingår i: Bmc Cancer. - : Springer Science and Business Media LLC. - 1471-2407. ; 21:1
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Tidskriftsartikel (refereegranskat)abstract
- Background: Colorectal cancer (CRC) screening reduces CRC incidence and mortality. However, current screening methods are either hampered by invasiveness or suboptimal performance, limiting their effectiveness as primary screening methods. To aid in the development of a non-invasive screening test with improved sensitivity and specificity, we have initiated a prospective biomarker study (CRCbiome), nested within a large randomized CRC screening trial in Norway. We aim to develop a microbiome-based classification algorithm to identify advanced colorectal lesions in screening participants testing positive for an immunochemical fecal occult blood test (FIT). We will also examine interactions with host factors, diet, lifestyle and prescription drugs. The prospective nature of the study also enables the analysis of changes in the gut microbiome following the removal of precancerous lesions. Methods: The CRCbiome study recruits participants enrolled in the Bowel Cancer Screening in Norway (BCSN) study, a randomized trial initiated in 2012 comparing once-only sigmoidoscopy to repeated biennial FIT, where women and men aged 50-74 years at study entry are invited to participate. Since 2017, participants randomized to FIT screening with a positive test result have been invited to join the CRCbiome study. Self-reported diet, lifestyle and demographic data are collected prior to colonoscopy after the positive FIT-test (baseline). Screening data, including colonoscopy findings are obtained from the BCSN database. Fecal samples for gut microbiome analyses are collected both before and 2 and 12 months after colonoscopy. Samples are analyzed using metagenome sequencing, with taxonomy profiles, and gene and pathway content as primary measures. CRCbiome data will also be linked to national registries to obtain information on prescription histories and cancer relevant outcomes occurring during the 10 year follow-up period. Discussion: The CRCbiome study will increase our understanding of how the gut microbiome, in combination with lifestyle and environmental factors, influences the early stages of colorectal carcinogenesis. This knowledge will be crucial to develop microbiome-based screening tools for CRC. By evaluating biomarker performance in a screening setting, using samples from the target population, the generalizability of the findings to future screening cohorts is likely to be high.
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| 6. |
- Sejrup, H.P., et al.
(författare)
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Response of Norwegian Sea temperature to solar forcing since 1000 AD
- 2010
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Ingår i: Journal of Geophysical Research. - 2156-2202. ; 115
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Tidskriftsartikel (refereegranskat)abstract
- Abstract: We report on a 1000 year long oxygen isotope record in sediments of the eastern Norwegian Sea which, we argue, represents the temperature and transport of warm Atlantic waters entering the Nordic Sea basin via the North Atlantic Drift and the large-scale Meridional Overturning Circulation. The single-sample resolution of the record is 2.5-10 years and age control is provided by Pb-210 and Cs-137 dating, identification of historic tephra, and a C-14 "wiggle-match" dating method in which the surface reservoir 14C age in the past is constrained rather than assumed, thereby eliminating a large source of chronological uncertainty. The oxygen isotope results indicate decade- to century-scale temperature variations of 1-2 degrees C in the shallow (similar to 50 m deep) subsurface which we find to be strongly correlated with various proxies of past solar activity. The correlations are synchronous to within the timescale uncertainties of the ocean and solar proxy records, which vary among the records and in time with a range of about 5-30 years. The observed ocean temperature response is larger than expected based on simple thermodynamic considerations, indicating that there is dynamical response of the high-latitude ocean to the Sun. Correlations of our results with a gridded temperature reconstruction for Europe are greater in central Europe than in coastal regions, suggesting that the temperature and transport of warm Atlantic waters entering the Nordic Basin and the pattern of temperature variability over Europe are both the proximate responses to a change in the atmospheric circulation, consistent with a forced shift in the primary modes of high-latitude atmospheric variability.
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