| 1. |
- Palmer, Nicholette D, et al.
(författare)
-
A genome-wide association search for type 2 diabetes genes in African Americans.
- 2012
-
Ingår i: PloS one. - San Francisco : Public Library of Science (PLoS). - 1932-6203. ; 7:1, s. e29202-
-
Tidskriftsartikel (refereegranskat)abstract
- African Americans are disproportionately affected by type 2 diabetes (T2DM) yet few studies have examined T2DM using genome-wide association approaches in this ethnicity. The aim of this study was to identify genes associated with T2DM in the African American population. We performed a Genome Wide Association Study (GWAS) using the Affymetrix 6.0 array in 965 African-American cases with T2DM and end-stage renal disease (T2DM-ESRD) and 1029 population-based controls. The most significant SNPs (n = 550 independent loci) were genotyped in a replication cohort and 122 SNPs (n = 98 independent loci) were further tested through genotyping three additional validation cohorts followed by meta-analysis in all five cohorts totaling 3,132 cases and 3,317 controls. Twelve SNPs had evidence of association in the GWAS (P<0.0071), were directionally consistent in the Replication cohort and were associated with T2DM in subjects without nephropathy (P<0.05). Meta-analysis in all cases and controls revealed a single SNP reaching genome-wide significance (P<2.5×10(-8)). SNP rs7560163 (P = 7.0×10(-9), OR (95% CI) = 0.75 (0.67-0.84)) is located intergenically between RND3 and RBM43. Four additional loci (rs7542900, rs4659485, rs2722769 and rs7107217) were associated with T2DM (P<0.05) and reached more nominal levels of significance (P<2.5×10(-5)) in the overall analysis and may represent novel loci that contribute to T2DM. We have identified novel T2DM-susceptibility variants in the African-American population. Notably, T2DM risk was associated with the major allele and implies an interesting genetic architecture in this population. These results suggest that multiple loci underlie T2DM susceptibility in the African-American population and that these loci are distinct from those identified in other ethnic populations.
|
|
| 2. |
- Duffy, J. Emmett, et al.
(författare)
-
Toward a Coordinated Global Observing System for Seagrasses and Marine Macroalgae
- 2019
-
Ingår i: Frontiers in Marine Science. - : Frontiers Media S.A.. - 2296-7745. ; 6
-
Forskningsöversikt (refereegranskat)abstract
- In coastal waters around the world, the dominant primary producers are benthic macrophytes, including seagrasses and macroalgae, that provide habitat structure and food for diverse and abundant biological communities and drive ecosystem processes. Seagrass meadows and macroalgal forests play key roles for coastal societies, contributing to fishery yields, storm protection, biogeochemical cycling and storage, and important cultural values. These socio-economically valuable services are threatened worldwide by human activities, with substantial areas of seagrass and macroalgal forests lost over the last half-century. Tracking the status and trends in marine macrophyte cover and quality is an emerging priority for ocean and coastal management, but doing so has been challenged by limited coordination across the numerous efforts to monitor macrophytes, which vary widely in goals, methodologies, scales, capacity, governance approaches, and data availability. Here, we present a consensus assessment and recommendations on the current state of and opportunities for advancing global marine macrophyte observations, integrating contributions from a community of researchers with broad geographic and disciplinary expertise. With the increasing scale of human impacts, the time is ripe to harmonize marine macrophyte observations by building on existing networks and identifying a core set of common metrics and approaches in sampling design, field measurements, governance, capacity building, and data management. We recommend a tiered observation system, with improvement of remote sensing and remote underwater imaging to expand capacity to capture broad-scale extent at intervals of several years, coordinated with strati fied in situ sampling annually to characterize the key variables of cover and taxonomic or functional group composition, and to provide ground-truth. A robust networked system of macrophyte observations will be facilitated by establishing best practices, including standard protocols, documentation, and sharing of resources at all stages of work flow, and secure archiving of open-access data. Because such a network is necessarily distributed, sustaining it depends on close engagement of local stakeholders and focusing on building and long-term maintenance of local capacity, particularly in the developing world. Realizing these recommendations will producemore effective, efficient, and responsive observing, a more accurate global picture of change in vegetated coastal systems, and stronger international capacity for sustaining observations.
|
|
| 3. |
- Kalinen, Sofia, et al.
(författare)
-
Differences in Gut Microbiota Profiles and Microbiota Steroid Hormone Biosynthesis in Men with and Without Prostate Cancer.
- 2024
-
Ingår i: European urology open science. - 2666-1683. ; 62, s. 140-150
-
Tidskriftsartikel (refereegranskat)abstract
- Although prostate cancer (PCa) is the most common cancer in men in Western countries, there is significant variability in geographical incidence. This might result from genetic factors, discrepancies in screening policies, or differences in lifestyle. Gut microbiota has recently been associated with cancer progression, but its role in PCa is unclear.Characterization of the gut microbiota and its functions associated with PCa.In a prospective multicenter clinical trial (NCT02241122), the gut microbiota profiles of 181 men with a clinical suspicion of PCa were assessed utilizing 16S rRNA sequencing.Sequences were assigned to operational taxonomic units, differential abundance analysis, and α- and β-diversities, and predictive functional analyses were performed. Plasma steroid hormone levels corresponding to the predicted microbiota steroid hormone biosynthesis profiles were investigated.Of 364 patients, 181 were analyzed, 60% of whom were diagnosed with PCa. Microbiota composition and diversity were significantly different in PCa, partially affected by Prevotella 9, the most abundant genus of the cohort, and significantly higher in PCa patients. Predictive functional analyses revealed higher 5-α-reductase, copper absorption, and retinol metabolism in the PCa-associated microbiome. Plasma testosterone was associated negatively with the predicted microbial 5-α-reductase level.Gut microbiota of the PCa patients differed significantly compared with benign individuals. Microbial 5-α-reductase, copper absorption, and retinol metabolism are potential mechanisms of action. These findings support the observed association of lifestyle, geography, and PCa incidence.In this report, we found that several microbes and potential functions of the gut microbiota are altered in prostate cancer compared with benign cases. These findings suggest that gut microbiota could be the link between environmental factors and prostate cancer.
|
|
| 4. |
- Saxena, Richa, et al.
(författare)
-
Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels
- 2007
-
Ingår i: Science. - : American Association for the Advancement of Science (AAAS). - 1095-9203 .- 0036-8075. ; 316:5829, s. 1331-1336
-
Tidskriftsartikel (refereegranskat)abstract
- New strategies for prevention and treatment of type 2 diabetes (T2D) require improved insight into disease etiology. We analyzed 386,731 common single-nucleotide polymorphisms (SNPs) in 1464 patients with T2D and 1467 matched controls, each characterized for measures of glucose metabolism, lipids, obesity, and blood pressure. With collaborators (FUSION and WTCCC/UKT2D), we identified and confirmed three loci associated with T2D - in a noncoding region near CDKN2A and CDKN2B, in an intron of IGF2BP2, and an intron of CDKAL1 - and replicated associations near HHEX and in SLC30A8 found by a recent whole-genome association study. We identified and confirmed association of a SNP in an intron of glucokinase regulatory protein (GCKR) with serum triglycerides. The discovery of associated variants in unsuspected genes and outside coding regions illustrates the ability of genome-wide association studies to provide potentially important clues to the pathogenesis of common diseases.
|
|
| 5. |
- Zhu, Youjian, et al.
(författare)
-
Cogasification of Australian Brown Coal with Algae in a Fluidized Bed Reactor
- 2015
-
Ingår i: Energy & Fuels. - : American Chemical Society (ACS). - 0887-0624 .- 1520-5029. ; 29:3, s. 1686-1700
-
Tidskriftsartikel (refereegranskat)abstract
- Recently, the use of algae for CO2 abatement, wastewater treatment, and energy production has increasingly gained attention worldwide. In order to explore the potential of using algae as an alternative fuel as well as the possible challenges related to the algae gasification process, two species of macroalgae, Derbesia tenuissima and Oedogonium sp., and one type of microalgae, Scenedesmus sp. were studied in this research. In this work, Oedogonium sp. was cultivated with two protocols: producing biomass with both high and low levels of nitrogen content. Cogasification of 10 wt % algae with an Australian brown coal was performed in a fluidized bed reactor, and the effects of algae addition on syngas yield, ash composition, and bed agglomeration were investigated. It was found that CO and H-2 yield increased and CO2 yield decreased after adding three types of macroalgae in the coal, with a slight increase of carbon conversion rate, compared to the coal alone experiment. In the case of coal/Scenedesmus sp, the carbon conversion rate decreased with lower CO/CO2/H-2 yield as compared to coal alone. Samples of fly ash, bed ash, and bed material agglomerates were analyzed using scanning electron microscopy combined with an energy dispersive X-ray detector (SEM-EDX) and X-ray diffraction (XRD). It was observed that both the fly ash and bed ash samples from all coal/macroalgae tests contained more Na and K as compared to the coal test. High Ca and Fe contents were also found in the fly ash and bed ash from the coal/Scenedesmus sp. test. Significant differences in the characteristics and compositions of the ash layer on the bed particles were observed from the different tests. Agglomerates were found in the bed material samples after the cogasification tests of coal/Oedogonium N+ and coal/Oedogonium N. The formation of liquid alkalisilicates on the sand particles was considered to be the main reason for agglomeration for the coal/Oedogonium N+ and coal/Oedogonium N tests. Agglomerates of fused ash and tiny silica sand particles were also found in the coal/Scenedesmus sp. test. In this case, however, the formation of a Fe-Al silicate eutectic mixture was proposed to be the main reason for agglomeration. Debersia was suggested to be a potential alternative fuel, which can be cogasified with brown coal without any significant operating problems under the current experimental conditions. However, for the other algae types, appropriate countermeasures are needed to avoid agglomeration and defluidization in the cogasification process.
|
|
| 6. |
- De las Cuevas, Carlos, et al.
(författare)
-
Revealing the reporting disparity : VigiBase highlights underreporting of clozapine in other Western European countries compared to the UK
- 2023
-
Ingår i: Schizophrenia Research. - : Elsevier. - 0920-9964 .- 1573-2509.
-
Tidskriftsartikel (refereegranskat)abstract
- Background: Pharmacovigilance studies indicate clozapine history is marked by adverse drug reactions (ADRs).Objective: In a 2021 article, the United Kingdom (UK) had >90 % of European clozapine-related fatal outcomes in VigiBase, the World Health Organization's pharmacovigilance database. Two possibly opposing hypotheses could explain this disparity: 1) fewer reported fatal outcomes in other Western European countries mainly reflect underreporting to VigiBase, and 2) the higher number of UK reports reflects higher real relative mortality.Methods: VigiBase reports from clozapine's introduction to December 31, 2022, were studied for ADRs and the top 10 causes of fatal outcomes. The UK was compared with 11 other top reporting Western countries (Germany, Denmark, France, Finland, Ireland, Italy, Netherlands, Norway, Spain, Sweden and Switzerland). Nine countries (except Ireland and Switzerland) were compared after controlling for population and clozapine prescriptions.Results: The UK accounted for 29 % of worldwide clozapine-related fatal outcomes, Germany 2 % and <1 % in each of the other countries. The nonspecific label “death” was the top cause in the world (46 %) and in the UK (33 %). “Pneumonia” was second in the world (8 %), the UK (12 %), Ireland (8 %) and Finland (14 %). Assuming that our corrections for population and clozapine use are correct, other countries underreported only 1–10 % of the UK clozapine fatal outcome number.Conclusions: Different Western European countries consistently underreport to VigiBase compared to the UK, but have different reporting/publishing styles for clozapine-related ADRs/fatal outcomes. Three Scandinavian registries suggest lives are saved as clozapine use increases, but this cannot be studied in pharmacovigilance databases.
|
|
| 7. |
- Strauss, Leena, et al.
(författare)
-
Seminal vesicles and urinary bladder as sites of aromatization of androgens in men, evidenced by a CYP19A1-driven luciferase reporter mouse and human tissue specimens.
- 2013
-
Ingår i: The FASEB Journal. - : Wiley. - 0892-6638 .- 1530-6860. ; 27:4, s. 1342-50
-
Tidskriftsartikel (refereegranskat)abstract
- The human CYP19A1 gene is expressed in various tissues by the use of tissue-specific promoters, whereas the rodent cyp19a1 gene is expressed mainly in the gonads and brain. We generated a transgenic mouse model containing a >100-kb 5' region of human CYP19A1 gene connected to a luciferase reporter gene. The luciferase activity in mouse tissues mimicked the CYP19A1 gene expression pattern in humans. Interestingly, the reporter gene activity was 16 and 160 times higher in the urinary bladder and seminal vesicles, respectively, as compared with the activity in the testis. Accordingly, CYP19A1 gene and P450arom protein expression was detected in those human tissues. Moreover, the data revealed that the expression of CYP19A1 gene is driven by promoters PII, I.4, and I.3 in the seminal vesicles, and by promoters PII and I.4 in the urinary bladder. Furthermore, the reporter gene expression in the seminal vesicles was androgen dependent: Castration decreased the expression ∼20 times, and testosterone treatment restored it to the level of an intact mouse. This reporter mouse model facilitates studies of tissue-specific regulation of the human CYP19A1 gene, and our data provide evidence for seminal vesicles as important sites for estrogen production in males.-Strauss, L., Rantakari, P., Sjögren, K., Salminen, A., Lauren, E., Kallio, J., Damdimopoulou, P., Boström, M., Boström, P. J., Pakarinen, P., Zhang, F. P., Kujala, P., Ohlsson, C., Mäkelä, S., Poutanen, M. Seminal vesicles and urinary bladder as sites of aromatization of androgens in men, evidenced by a CYP19A1-driven luciferase reporter mouse and human tissue specimens.
|
|
| 8. |
- Zhu, Youjian, et al.
(författare)
-
Fluidized bed co-gasification of algae and wood pellets : gas yields and bed agglomeration analysis
- 2016
-
Ingår i: Energy & Fuels. - : American Chemical Society (ACS). - 0887-0624 .- 1520-5029. ; 30:3, s. 1800-1809
-
Tidskriftsartikel (refereegranskat)abstract
- Algae utilization in energy production has gained increasing attention as a result of its characteristics, such as high productivity, rapid growth rate, and flexible cultivation environment. In this paper, three species of algae, including a fresh water macroalgae, Oedogonium sp., a saltwater macroalgae, Derbersia tenuissima, and a microalgae species, Scenedesmus sp., were studied to explore the potential of using smaller amounts of algae fuels in blends with traditional woody biomasses in the gasification processes. Co-gasification of 10 wt % algae and 90 wt % Swedish wood pellets was performed in a fluidized bed reactor. The effects of algae addition on the syngas yield and carbon conversion rate were investigated. The addition of 10 wt % algae in wood increased the CO, H2, and CH4 yields by 3–20, 6–31, and 9–20%, respectively. At the same time, it decreased the CO2 yield by 3–18%. The carbon conversion rates were slightly increased with the addition of 10 wt % macroalgae in wood, but the microalgae addition resulted in a decrease of the carbon conversion rate by 8%. Meanwhile, the collected fly ash and bed material samples were analyzed using scanning electron microscopy combined with an energy-dispersive X-ray detector (SEM–EDX) and X-ray diffraction (XRD) technique. The fly ashes of wood/marcoalgae tests showed a higher Na content with lower Si and Ca contents compared to the wood test. The gasification tests were scheduled to last 4 h; however, only wood and wood/Derbersia gasification experiments were carried out without significant operational problems. The gasification of 10 wt % Oedogonium N+ and Oedogonium N– led to defluidization of the bed in less than 1 h, and the wood/Scenedesmus (WD/SA) test was stopped after 1.8 h as a result of severe agglomeration. It was found that the algae addition had a remarkable influence on the characteristics and compositions of the coating layer. The coating layer formation and bed agglomeration mechanism of wood/macroalgae was initiated by the reaction of alkali compounds with the bed particles to form low-temperature melting silicates (inner layer). For the WD/SA test, the agglomeration was influenced by both the composition of the original algae fuel as well as the external mineral contaminations. In summary, the operational problems experienced during the co-gasification tests of different algae–wood mixtures were assigned to the specific ash compositions of the different fuel mixtures. This showed the need for countermeasures, specifically to balance the high alkali content, to reach stable operation in a fluidized bed gasifier.
|
|
| 9. |
- Zhu, Youjian, et al.
(författare)
-
Preliminary understanding on the ash behavior of algae during co-gasification in an entrained flow reactor
- 2018
-
Ingår i: Fuel processing technology. - : Elsevier. - 0378-3820 .- 1873-7188. ; 175, s. 26-34
-
Tidskriftsartikel (refereegranskat)abstract
- Algae are considered as a promising alternative fuel to produce energy due to its advantages such as high production yield, short growth cycle and flexible growing environment. Unfortunately, ash-related issues restrict its thermochemical utilization due to the high ash content and especially the high alkali metal concentration. In this paper, the gasification performance and ash behavior were experimentally analysed for three macro- and micro-algal species. Clear differences in the proximate and ultimate compositions were found between the cultivated algae used in this study and macroalgae (seaweed) harvested from the marine environments. Algal biomass generally contained higher Na and P contents than lignocellulosic biomass. Microalgae also had a relatively high mineral content due to the impurities in the harvesting process which included centrifugal pumping followed by sedimentation. Co-gasification of 20 wt% algae with softwood was investigated using an entrained flow reactor. The addition of both macroalgal species Derbersia tenuissima and Oedogonium to softwood had a limited influence on the gas yields and carbon conversion. On the other hand, the addition of the microalgal species Scenedesmus significantly decreased the main gas yields and carbon conversion. Moreover, the addition of algae clearly changed the residual ash composition of the base fuel. Finally, a preliminary understanding of the ash behavior of the tested algae blends was obtained through the analysis of the fuel ashes and the collected residual ashes. Fouling and corrosion were presumably occurred during the co-gasification of wood/macroalgae blends in view of the high alkali metal content. Microalga Scenedesmus had a high mineral content which could potentially capture the alkali metal in the ash and mitigate fouling when gasified with softwood. The growing environment and harvesting method were found to be significantly affecting the ash behavior implying the need for careful consideration regarding co-gasification process.
|
|
| 10. |
|
|
