| 1. |
- Bernal, Ximena E., et al.
(författare)
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Empowering Latina scientists
- 2019
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Ingår i: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 363:6429, s. 825-826
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)
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| 2. |
- Hudson, Lawrence N, et al.
(författare)
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The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project
- 2017
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Ingår i: Ecology and Evolution. - : John Wiley & Sons. - 2045-7758. ; 7:1, s. 145-188
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Tidskriftsartikel (refereegranskat)abstract
- The PREDICTS project-Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)-has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.
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| 3. |
- de Jesus Beleno-Saenz, Kelvin, et al.
(författare)
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Non-Invasive Method to Detect Infection with Mycobacterium tuberculosis Complex in Wild Boar by Measurement of Volatile Organic Compounds Obtained from Feces with an Electronic Nose System
- 2021
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Ingår i: Sensors. - : MDPI. - 1424-8220. ; 21:2
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Tidskriftsartikel (refereegranskat)abstract
- More effective methods to detect bovine tuberculosis, caused by Mycobacterium bovis, in wildlife, is of paramount importance for preventing disease spread to other wild animals, livestock, and human beings. In this study, we analyzed the volatile organic compounds emitted by fecal samples collected from free-ranging wild boar captured in Donana National Park, Spain, with an electronic nose system based on organically-functionalized gold nanoparticles. The animals were separated by the age group for performing the analysis. Adult (>24 months) and sub-adult (12-24 months) animals were anesthetized before sample collection, whereas the juvenile (<12 months) animals were manually restrained while collecting the sample. Good accuracy was obtained for the adult and sub-adult classification models: 100% during the training phase and 88.9% during the testing phase for the adult animals, and 100% during both the training and testing phase for the sub-adult animals, respectively. The results obtained could be important for the further development of a non-invasive and less expensive detection method of bovine tuberculosis in wildlife populations.
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| 4. |
- Djedovic, Neda, et al.
(författare)
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Comparison of dendritic cells obtained from autoimmunty-prone and resistant rats
- 2019
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Ingår i: Immunobiology. - : ELSEVIER GMBH. - 0171-2985 .- 1878-3279. ; 224:3, s. 470-476
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Tidskriftsartikel (refereegranskat)abstract
- Dendritic cells (DC) are responsible for the initiation and shaping of the adaptive immune response and are in the focus of autoimmunity research. We were interested in comparison of DC obtained from autoimmunity-prone Dark Agouti (DA) rats and autoimmunity-resistant Albino Oxford (AO) rats. DC were generated from bone marrow precursors and matured (mDC) by lipopolysaccharide. Tolerogenic DC (tolDC) obtained by vitamin D3 treatment were studied in parallel. Profile of cytokine production was different in AO and DA mDC and tolDC. Expression of MHC class II molecules and CD86 were higher in DA DC, while vitamin D3 reduced their expression in dendritic cells of both strains. Allogeneic proliferation of CD4(+) T cells was reduced by AO tolDC, but not with DA tolDC in comparison to respective mDC. Finally, expression of various genes identified as differentially expressed in human mDC and tolDC was also analyzed in AO and DA DC. Again, AO and DA DC differed in the expression of the analyzed genes. To conclude, AO and DA DC differ in production of cytokines, expression of antigen presentation-related molecules and in regulation of CD4(+) T proliferation. The difference is valuable for understanding the divergence of the strains in their susceptibility to autoimmunity.
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| 5. |
- Durán-Acevedo, Cristhian Manuel, et al.
(författare)
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Exhaled breath analysis for gastric cancer diagnosis in Colombian patients.
- 2018
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Ingår i: Oncotarget. - : Impact Journals, LLC. - 1949-2553. ; 9:48, s. 28805-28817
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Tidskriftsartikel (refereegranskat)abstract
- We present here the first study that directly correlates gastric cancer (GC) with specific biomarkers in the exhaled breath composition on a South American population, which registers one of the highest global incidence rates of gastric affections. Moreover, we demonstrate a novel solid state sensor that predicts correct GC diagnosis with 97% accuracy. Alveolar breath samples of 30 volunteers (patients diagnosed with gastric cancer and a controls group formed of patients diagnosed with other gastric diseases) were collected and analyzed by gas-chromatography/mass-spectrometry (GC-MS) and with an innovative chemical gas sensor based on gold nanoparticles (AuNP) functionalized with octadecylamine ligands. Our GC-MS analyses identified 6 volatile organic compounds that showed statistically significant differences between the cancer patients and the controls group. These compounds were different from those identified in previous studied performed on other populations with high incidence rates of this malady, such as China (representative for Eastern Asia region) and Latvia (representative for Baltic States), attributable to lifestyle, alimentation and genetics differences. A classification model based on principal component analysis of our sensor data responses to the breath samples yielded 97% accuracy, 100% sensitivity and 93% specificity. Our results suggest a new and non-intrusive methodology for early diagnosis of gastric cancer that may be deployed in regions lacking well-developed health care systems as a prediagnosis test for selecting the patients that should undergo deeper investigations (e.g., endoscopy and biopsy).
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| 6. |
- Gomez-Velazquez, Melisa, et al.
(författare)
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CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart
- 2017
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Ingår i: PLOS Genetics. - : PUBLIC LIBRARY SCIENCE. - 1553-7390 .- 1553-7404. ; 13:8
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Tidskriftsartikel (refereegranskat)abstract
- Cardiac progenitors are specified early in development and progressively differentiate and mature into fully functional cardiomyocytes. This process is controlled by an extensively studied transcriptional program. However, the regulatory events coordinating the progression of such program from development to maturation are largely unknown. Here, we show that the genome organizer CTCF is essential for cardiogenesis and that it mediates genomic interactions to coordinate cardiomyocyte differentiation and maturation in the developing heart. Inactivation of Ctcf in cardiac progenitor cells and their derivatives in vivo during development caused severe cardiac defects and death at embryonic day 12.5. Genome wide expression analysis in Ctcf mutant hearts revealed that genes controlling mitochondrial function and protein production, required for cardiomyocyte maturation, were upregulated. However, mitochondria from mutant cardiomyocytes do not mature properly. In contrast, multiple development regulatory genes near predicted heart enhancers, including genes in the IrxA cluster, were downregulated in Ctcf mutants, suggesting that CTCF promotes cardiomyocyte differentiation by facilitating enhancer-promoter interactions. Accordingly, loss of CTCF disrupts gene expression and chromatin interactions as shown by chromatin conformation capture followed by deep sequencing. Furthermore, CRISPR-mediated deletion of an intergenic CTCF site within the IrxA cluster alters gene expression in the developing heart. Thus, CTCF mediates local regulatory interactions to coordinate transcriptional programs controlling transitions in morphology and function during heart development.
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| 7. |
- Maitre, Léa, et al.
(författare)
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State-of-the-art methods for exposure-health studies: Results from the exposome data challenge event
- 2022
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Ingår i: Environment International. - : Elsevier BV. - 0160-4120 .- 1873-6750. ; 168
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Tidskriftsartikel (refereegranskat)abstract
- The exposome recognizes that individuals are exposed simultaneously to a multitude of different environmental factors and takes a holistic approach to the discovery of etiological factors for disease. However, challenges arise when trying to quantify the health effects of complex exposure mixtures. Analytical challenges include dealing with high dimensionality, studying the combined effects of these exposures and their interactions, integrating causal pathways, and integrating high-throughput omics layers. To tackle these challenges, the Barcelona Institute for Global Health (ISGlobal) held a data challenge event open to researchers from all over the world and from all expertises. Analysts had a chance to compete and apply state-of-the-art methods on a common partially simulated exposome dataset (based on real case data from the HELIX project) with multiple correlated exposure variables (P > 100 exposure variables) arising from general and personal environments at different time points, biological molecular data (multi-omics: DNA methylation, gene expression, proteins, metabolomics) and multiple clinical phenotypes in 1301 mother–child pairs. Most of the methods presented included feature selection or feature reduction to deal with the high dimensionality of the exposome dataset. Several approaches explicitly searched for combined effects of exposures and/or their interactions using linear index models or response surface methods, including Bayesian methods. Other methods dealt with the multi-omics dataset in mediation analyses using multiple-step approaches. Here we discuss features of the statistical models used and provide the data and codes used, so that analysts have examples of implementation and can learn how to use these methods. Overall, the exposome data challenge presented a unique opportunity for researchers from different disciplines to create and share state-of-the-art analytical methods, setting a new standard for open science in the exposome and environmental health field.
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| 8. |
- Rochwerger, Benny, et al.
(författare)
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Design for Future Internet Service Infrastructures
- 2009
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Ingår i: Towards the Future Internet. - : IOS Press. - 9781607500070 - 9781607504313 ; , s. 227-237
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Bokkapitel (övrigt vetenskapligt/konstnärligt)abstract
- This paper presents current research in the design and integration of advance systems, service and management technologies into a new generation of Service Infrastructure for Future Internet of Services, which includes Service Clouds Computing. These developments are part of the FP7 RESERVOIR project and represent a creative mixture of service and network virtualisation, service computing, network and service management techniques.
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| 9. |
- Rochwerger, Benny, et al.
(författare)
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RESERVOIR : management technologies and requirements for next generation service oriented infrastructures
- 2009
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Ingår i: Proceedings of The 11th IFIP/IEEE International Symposium on Integrated Network Management. - : IEEE Computer Society Press. - 9781424434879 - 9781424434862 ; , s. 307-310
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Konferensbidrag (refereegranskat)abstract
- RESERVOIR project is developing an advanced system and service management approach that will serve as the infrastructure for cloud computing and communications and future Internet of services by creative coupling of service virtualization, grid computing, networking and service management techniques. This paper presents work in progress for the integration and management of such systems into a new generation of managed service infrastructure.
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| 10. |
- Rochwerger, Benny, et al.
(författare)
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The reservoir model and architecture for open federated cloud computing
- 2009
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Ingår i: IBM Journal of Research and Development. - 0018-8646 .- 2151-8556. ; 53:4
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Tidskriftsartikel (refereegranskat)abstract
- The emerging cloud-computing paradigm is rapidly gaining momentum as an alternative to traditional IT (information technology). However, contemporary cloud-computing offerings are primarily targeted for Web 2.0-style applications. Only recently have they begun to address the requirements of enterprise solutions, such as support for infrastructure service-level agreements. To address the challenges and deficiencies in the current state of the art, we propose a modular, extensible cloud architecture with intrinsic support for business service management and the federation of clouds. The goal is to facilitate an open, service-based online economy in which resources and services are transparently provisioned and managed across clouds on an on-demand basis at competitive costs with high-quality service. The Reservoir project is motivated by the vision of implementing an architecture that would enable providers of cloud infrastructure to dynamically partner with each other to create a seemingly infinite pool of IT resources while fully preserving their individual autonomy in making technological and business management decisions. To this end, Reservoir could leverage and extend the advantages of virtualization and embed autonomous management in the infrastructure. At the same time, the Reservoir approach aims to achieve a very ambitious goal: creating a foundation for next-generation enterprise-grade cloud computing.
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