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| 2. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 3. |
- Cai, Shangming, et al.
(författare)
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DynaComm: Accelerating Distributed CNN Training between Edges and Clouds through Dynamic Communication Scheduling
- 2022
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Ingår i: IEEE Journal on Selected Areas in Communications. - : IEEE. - 0733-8716 .- 1558-0008. ; 40:2, s. 611-625
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Tidskriftsartikel (refereegranskat)abstract
- To reduce uploading bandwidth and address privacy concerns, deep learning at the network edge has been an emerging topic. Typically, edge devices collaboratively train a shared model using real-time generated data through the Parameter Server framework. Although all the edge devices can share the computing workloads, the distributed training processes over edge networks are still time-consuming due to the parameters and gradients transmission procedures between parameter servers and edge devices. Focusing on accelerating distributed Convolutional Neural Networks (CNNs) training at the network edge, we present DynaComm, a novel scheduler that dynamically decomposes each transmission procedure into several segments to achieve optimal layer-wise communications and computations overlapping during run-time. Through experiments, we verify that DynaComm manages to achieve optimal layer-wise scheduling for all cases compared to competing strategies while the model accuracy remains untouched.
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| 4. |
- Song, Dongsheng, et al.
(författare)
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Detection of electron magnetic circular dichroism signals under zone axial diffraction geometry
- 2016
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Ingår i: Ultramicroscopy. - : Elsevier BV. - 0304-3991 .- 1879-2723. ; 169, s. 44-54
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Tidskriftsartikel (refereegranskat)abstract
- EMCD (electron magnetic circular dichroism) technique provides us a new opportunity to explore magnetic properties in the transmission electron microscope. However, specific diffraction geometry is the major limitation. Only the two-beam and three-beam case are demonstrated in the experiments until now. Here, we present the more general case of zone axial (ZA) diffraction geometry through which the EMCD signals can be detected even with the very strong sensitivity to dynamical diffraction conditions. Our detailed calculations and well-controlled diffraction conditions lead to experiments in agreement with theory. The effect of dynamical diffraction conditions on EMCD signals are discussed both in theory and experiments. Moreover, with the detailed analysis of dynamical diffraction effects, we experimentally obtain the separate EMCD signals for each crystallographic site in Y3Fe5O12, which is also applicable for other materials and cannot be achieved by site-specific EMCD and XMCD technique directly. Our work extends application of more general diffraction geometries and will further promote the development of EMCD technique.
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| 5. |
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- 2019
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Tidskriftsartikel (refereegranskat)
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