| 1. |
- Grinko, A. A., et al.
(författare)
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Sediment Organic Matter in Areas of Intense Methane Release in the Laptev Sea : Characteristics of Molecular Composition
- 2020
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Ingår i: Russian Geology and Geophysics. - 1068-7971 .- 1878-030X. ; 61:4, s. 456-477
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Tidskriftsartikel (refereegranskat)abstract
- We present results of study of the molecular composition of organic matter (OM) in the bottom sediments of the Laptev Sea by gas chromatography-mass spectrometry, isotope gas chromatography-mass spectrometry, and Rock-Eval pyrolytic analysis. The OM of all collected sediment samples shows a significant terrigenous contribution. Compounds that are biomarkers of methanotrophic microorganisms arc also found. A positive correlation between the contents of the studied biomarkers and the contents of pelite and total organic carbon is observed at the sites with documented intense methane bubbling. For example, the average content of C30 hopenes at the methane stations is twice higher than that at the background ones. The average content of C32 alpha beta-hopanes in sediment samples from the methane seepage area is 1.5 tunes higher than that at the background stations. We suggest that the increased C30 alpha beta-hopane content (similar to 1.5 times higher within the methane seepage area) and the decreased more index relative to the C31 hopane index are due to the inflow of OM of petroleum origin. The presence of biphenyl in sediments indicates its petroleum origin, which supports our assumption of the migratory nature of petroleum hydrocarbons in the methane seepage area. Triterpenoids found in the sediment OM indicate diagenetic bacterial transformation of OM in the methane seepage areas, which shows that methane has been released for a long time. We assume the intense activity of the consortium of methanotrophs and sulfate reducers in the methane seepage areas.
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| 2. |
- Kawahara, R., et al.
(författare)
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Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis
- 2021
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Ingår i: Nature Methods. - : Springer Science and Business Media LLC. - 1548-7091 .- 1548-7105. ; 18, s. 1304-1316
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Tidskriftsartikel (refereegranskat)abstract
- Glycoproteomics is a powerful yet analytically challenging research tool. Software packages aiding the interpretation of complex glycopeptide tandem mass spectra have appeared, but their relative performance remains untested. Conducted through the HUPO Human Glycoproteomics Initiative, this community study, comprising both developers and users of glycoproteomics software, evaluates solutions for system-wide glycopeptide analysis. The same mass spectrometrybased glycoproteomics datasets from human serum were shared with participants and the relative team performance for N- and O-glycopeptide data analysis was comprehensively established by orthogonal performance tests. Although the results were variable, several high-performance glycoproteomics informatics strategies were identified. Deep analysis of the data revealed key performance-associated search parameters and led to recommendations for improved 'high-coverage' and 'high-accuracy' glycoproteomics search solutions. This study concludes that diverse software packages for comprehensive glycopeptide data analysis exist, points to several high-performance search strategies and specifies key variables that will guide future software developments and assist informatics decision-making in glycoproteomics. This analysis presents the results of a community-based evaluation of existing software for large-scale glycopeptide data analysis.
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| 3. |
- Alekseev, A. Yu, et al.
(författare)
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Curvature-induced effects in semiconducting alkaline-earth metal silicide nanotubes
- 2021
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Ingår i: Physica. E, Low-Dimensional systems and nanostructures. - : Elsevier BV. - 1386-9477 .- 1873-1759. ; 128
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Tidskriftsartikel (refereegranskat)abstract
- By means of ab-initio techniques we have investigated changes in the structure and electronic properties of alkaline-earth metal silicide (Ca2Si, Mg2Si and MgCaSi) nanotubes caused by the curvature-induced effects. It is revealed that the curvature-induced effects can: 1) stabilize Mg2Si nanotubes in a phase, which is metastable for the parent 2D Mg2Si; 2) lead to an energy gain as a result of 2D to nanotube structural transformation in the case of ternary MgCaSi nanotubes; 3) modify the band dispersion and band gaps for nanotubes with the diameters less than 30 angstrom. In addition, Mg2Si and MgCaSi nanotubes are found to be direct band-gap (0.5-1.2 eV) materials with appreciable oscillator strength of the first direct transitions.
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| 4. |
- Alekseev, A. Yu, et al.
(författare)
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Stability of 2D Alkaline-Earth Metal Silicides, Germanides and Stannides
- 2019
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Ingår i: International Journal of Nanoscience. - : World Scientific Publishing Co. Pte Ltd. - 0219-581X. ; 18:3-4
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Tidskriftsartikel (refereegranskat)abstract
- By means of ab initio calculations, we have estimated stability of 2D Me2X (Me = Mg, Ca, Sr, Ba and X = Si, Ge, Sn) in the T and Td phases, which are similar to the ones of 2D transition metal chalcogenides, in addition to their phonon spectra. The T phase is found to be more stable for 2D Ca2X, Sr2X and Ba2X, whereas the Td phase is predicted to be the ground state for 2D Mg2X. We have also discussed that imaginary frequencies in the calculated phonon spectra of 2D Me2X, which appeared in the vicinity of the Gamma point, were not necessarily associated with the dynamic instability.
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