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- Xiao, L., et al.
(författare)
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A catalog of the mouse gut metagenome
- 2015
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Ingår i: Nature Biotechnology. - : Springer Science and Business Media LLC. - 1087-0156 .- 1546-1696. ; 33:10
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Tidskriftsartikel (refereegranskat)abstract
- We established a catalog of the mouse gut metagenome comprising similar to 2.6 million nonredundant genes by sequencing DNA from fecal samples of 184 mice. To secure high microbiome diversity, we used mouse strains of diverse genetic backgrounds, from different providers, kept in different housing laboratories and fed either a low-fat or high-fat diet. Similar to the human gut microbiome, >99% of the cataloged genes are bacterial. We identified 541 metagenomic species and defined a core set of 26 metagenomic species found in 95% of the mice. The mouse gut microbiome is functionally similar to its human counterpart, with 95.2% of its Kyoto Encyclopedia of Genes and Genomes (KEGG) orthologous groups in common. However, only 4.0% of the mouse gut microbial genes were shared (95% identity, 90% coverage) with those of the human gut microbiome. This catalog provides a useful reference for future studies.
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- Bäckhed, Fredrik, 1973, et al.
(författare)
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Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
- 2015
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Ingår i: Cell Host & Microbe. - Cambridge : Elsevier BV. - 1931-3128 .- 1934-6069. ; 17:5, s. 690-703
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Tidskriftsartikel (refereegranskat)abstract
- The gut microbiota is central to human health, but its establishment in early life has not been quantitatively and functionally examined. Applying metagenomic analysis on fecal samples from a large cohort of Swedish infants and their mothers, we characterized the gut microbiome during the first year of life and assessed the impact of mode of delivery and feeding on its establishment. In contrast to vaginally delivered infants, the gut microbiota of infants delivered by C-section showed significantly less resemblance to their mothers. Nutrition had a major impact on early microbiota composition and function, with cessation of breast-feeding, rather than introduction of solid food, being required for maturation into an adult-like microbiota. Microbiota composition and ecological network had distinctive features at each sampled stage, in accordance with functional maturation of the microbiome. Our findings establish a framework for understanding the interplay between the gut microbiome and the human body in early life.
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- Colding, Johan, et al.
(författare)
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Golf Courses and Wetland Fauna.
- 2009
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Ingår i: Ecological Applications. - : Wiley. - 1051-0761 .- 1939-5582. ; 19:6, s. 1481-1491
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Tidskriftsartikel (refereegranskat)abstract
- Golf courses are often considered to be chemical-intensive ecosystems with negative impacts on fauna. Here we provide evidence that golf courses can contribute to the support and conservation of wetland fauna, i.e., amphibians and macroinvertebrates. Comparisons of amphibian occurrence, diversity of macroinvetebrates, and occurrence of species of conservation concern were made between permanent freshwater ponds surveyed on golf courses around Sweden’s capital city, Stockholm, and off-course ponds in natureprotected areas and residential parklands. A total of 71 macroinvertebrate species were recorded in the field study, with no significant difference between golf course ponds and offcourse ponds at the species, genus, or family levels. A within-group similarities test showed that golf course ponds have a more homogenous species composition than ponds in natureprotected areas and ponds in residential parkland. Within the macroinvertebrate group, a total of 11 species of odonates were identified, with no difference detected between the categories of ponds, nor any spatial autocorrelation. Significant differences were found between pond categories in the occurrence of five species of amphibians, although anuran occurrence did not differ between ponds. The great crested newt (Triturus cristatus) was significantly associated with golf course ponds, but the smooth newt (Triturus vulgaris) was not. We found no evidence of any correlation between pond size and occurrence of amphibians. Among the taxa of conservation concern included in the sample, all amphibians are nationally protected in Sweden, with the internationally threatened T. cristatus more frequently found in golf course ponds. Among macroinveterbrates of conservation status, the large white-faced darter dragonfly (Leucorrhinia pectoralis) was only detected in golf course ponds, and Tricholeiochiton fagesi (Trichoptera) was only found in one off-course pond. GIS results revealed that golf courses provide over a quarter of all available permanent, freshwater ponds in central greater Stockholm. We assert that golf courses have the potential to contribute to wetland fauna support, particularly in urban settings where they may significantly contribute to wetland creation. We propose a greater involvement of ecologists in the design of golf courses to further bolster this potential.
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