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- Blauw, Hylke M, et al.
(författare)
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A large genome scan for rare CNVs in amyotrophic lateral sclerosis
- 2010
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Ingår i: Human Molecular Genetics. - : Oxford Journals. - 0964-6906 .- 1460-2083. ; 19:20, s. 4091-4099
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Tidskriftsartikel (refereegranskat)abstract
- Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease selectively affecting motor neurons in the brain and spinal cord. Recent genome-wide association studies (GWASs) have identified several common variants which increase disease susceptibility. In contrast, rare copy-number variants (CNVs), which have been associated with several neuropsychiatric traits, have not been studied for ALS in well-powered study populations. To examine the role of rare CNVs in ALS susceptibility, we conducted a CNV association study including over 19,000 individuals. In a genome-wide screen of 1875 cases and 8731 controls, we did not find evidence for a difference in global CNV burden between cases and controls. In our association analyses, we identified two loci that met our criteria for follow-up: the DPP6 locus (OR = 3.59, P = 6.6 × 10(-3)), which has already been implicated in ALS pathogenesis, and the 15q11.2 locus, containing NIPA1 (OR = 12.46, P = 9.3 × 10(-5)), the gene causing hereditary spastic paraparesis type 6 (HSP 6). We tested these loci in a replication cohort of 2559 cases and 5887 controls. Again, results were suggestive of association, but did not meet our criteria for independent replication: DPP6 locus: OR = 1.92, P = 0.097, pooled results: OR = 2.64, P = 1.4 × 10(-3); NIPA1: OR = 3.23, P = 0.041, pooled results: OR = 6.20, P = 2.2 × 10(-5)). Our results highlight DPP6 and NIPA1 as candidates for more in-depth studies. Unlike other complex neurological and psychiatric traits, rare CNVs with high effect size do not play a major role in ALS pathogenesis.
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| 5. |
- Adare, A., et al.
(författare)
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Measurement of higher cumulants of net-charge multiplicity distributions in Au plus Au collisions at root s(NN)=7.7-200 GeV
- 2016
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Ingår i: Physical Review C (Nuclear Physics). - 0556-2813. ; 93:1
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Tidskriftsartikel (refereegranskat)abstract
- We report the measurement of cumulants (C-n,n = 1, ..., 4) of the net-charge distributions measured within pseudorapidity (vertical bar eta vertical bar < 0.35) in Au + Au collisions at root s(NN) = 7.7-200 GeV with the PHENIX experiment at the Relativistic Heavy Ion Collider. The ratios of cumulants (e.g., C-1/C-2, C-3/C-1) of the net-charge distributions, which can be related to volume independent susceptibility ratios, are studied as a function of centrality and energy. These quantities are important to understand the quantum-chromodynamics phase diagram and possible existence of a critical end point. The measured values are very well described by expectation from negative binomial distributions. We do not observe any nonmonotonic behavior in the ratios of the cumulants as a function of collision energy. The measured values of C-1/C-2 and C-3/C-1 can be directly compared to lattice quantum-chromodynamics calculations and thus allow extraction of both the chemical freeze-out temperature and the baryon chemical potential at each center-of-mass energy. The extracted baryon chemical potentials are in excellent agreement with a thermal-statistical analysis model.
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| 7. |
- Alexanderson, Helena, et al.
(författare)
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An Arctic perspective on dating Mid-Late Pleistocene environmental history
- 2014
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Ingår i: Quaternary Science Reviews. - : Elsevier BV. - 0277-3791 .- 1873-457X. ; 92, s. 9-31
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Forskningsöversikt (refereegranskat)abstract
- To better understand Pleistocene climatic changes in the Arctic, integrated palaeoenvironmental andpalaeoclimatic signals from a variety of marine and terrestrial geological records as well as geochronologicage control are required, not least for correlation to extra-Arctic records. In this paper we discuss,from an Arctic perspective, methods and correlation tools that are commonly used to date ArcticPleistocene marine and terrestrial events. We review the state of the art of Arctic geochronology, withfocus on factors that affect the possibility and quality of dating, and support this overview by examples ofapplication of modern dating methods to Arctic terrestrial and marine sequences.Event stratigraphy and numerical ages are important tools used in the Arctic to correlate fragmentedterrestrial records and to establish regional stratigraphic schemes. Age control is commonly provided byradiocarbon, luminescence or cosmogenic exposure ages. Arctic Ocean deep-sea sediment successionscan be correlated over large distances based on geochemical and physical property proxies for sedimentcomposition, patterns in palaeomagnetic records and, increasingly, biostratigraphic data. Many of theseproxies reveal cyclical patterns that provide a basis for astronomical tuning.Recent advances in dating technology, calibration and age modelling allow for measuring smallerquantities of material and to more precisely date previously undatable material (i.e. foraminifera for 14C,and single-grain luminescence). However, for much of the Pleistocene there are still limits to the resolutionof most dating methods. Consequently improving the accuracy and precision (analytical andgeological uncertainty) of dating methods through technological advances and better understanding ofprocesses are important tasks for the future. Another challenge is to better integrate marine andterrestrial records, which could be aided by targeting continental shelf and lake records, exploringproxies that occur in both settings, and by creating joint research networks that promote collaborationbetween marine and terrestrial geologists and modellers.
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| 8. |
- Barrientos, Natalia, et al.
(författare)
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Arctic Ocean benthic foraminifera Mg/Ca ratios and global Mg/Ca-temperature calibrations: New constraints at low temperatures
- 2018
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Ingår i: Geochimica et Cosmochimica Acta. - : Elsevier BV. - 0016-7037 .- 1872-9533. ; 236, s. 240-259
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Tidskriftsartikel (refereegranskat)abstract
- We explore the use of Mg/Ca ratios in six Arctic Ocean benthic foraminifera species as bottom water palaeothermometers and expand published Mg/Ca-temperature calibrations to the coldest bottom temperatures (<1 °C). Foraminifera were analyzed in surface sediments at 27 sites in the Chukchi Sea, East Siberian Sea, Laptev Sea, Lomonosov Ridge and Petermann Fjord. The sites span water depths of 52–1157 m and bottom water temperatures (BWT) of −1.8 to +0.9 °C. Benthic foraminifera were alive at time of collection, determined from Rose Bengal (RB) staining. Three infaunal and three epifaunal species were abundant enough for Mg/Ca analysis. As predicted by theory and empirical evidence, cold water Arctic Ocean benthic species produce low Mg/Ca ratios, the exception being the porcelaneous species Quinqueloculina arctica. Our new data provide important constraints at the cold end (<1 °C) when added to existing global datasets. The refined calibrations based on the new and published global data appear best supported for the infaunal species Nonionella labradorica (Mg/Ca = 1.325 ± 0.01 × e^(0.065 ± 0.01 × BWT), r2 = 0.9), Cassidulina neoteretis (Mg/Ca = 1.009 ± 0.02 × e^(0.042 ± 0.01 × BWT), r2 = 0.6) and Elphidium clavatum (Mg/Ca = 0.816 ± 0.06 + 0.125 ± 0.05 × BWT, r2 = 0.4). The latter is based on the new Arctic data only. This suggests that Arctic Ocean infaunal taxa are suitable for capturing at least relative and probably semi-quantitative past changes in BWT. Arctic Oridorsalis tener Mg/Ca data are combined with existing O. umbonatus Mg/Ca data from well saturated core-tops from other regions to produce a temperature calibration with minimal influence of bottom water carbonate saturation state (Mg/Ca = 1.317 ± 0.03 × e^(0.102 ± 0.01 BWT), r2 = 0.7). The same approach for Cibicidoides wuellerstorfi yields Mg/Ca = 1.043 ± 0.03 × e^(0.118 ± 0.1 BWT), r2 = 0.4. Mg/Ca ratios of the porcelaneous epifaunal species Q. arctica show a clear positive relationship between Mg/Ca and Δ[CO32−] indicating that this species is not suitable for Mg/Ca-palaeothermometry at low temperatures, but may be useful in reconstructing carbonate system parameters through time.
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