| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
- Jungebluth, Philipp, et al.
(författare)
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Tracheobronchial transplantation with a stem-cell-seeded bioartificial nanocomposite : a proof-of-concept study
- 2011
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Ingår i: The Lancet. - 0140-6736 .- 1474-547X. ; 378:9808, s. 1997-2004
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Tidskriftsartikel (refereegranskat)abstract
- Background Tracheal tumours can be surgically resected but most are an inoperable size at the time of diagnosis; therefore, new therapeutic options are needed. We report the clinical transplantation of the tracheobronchial airway with a stem-cell-seeded bioartificial nanocomposite. Methods A 36-year-old male patient, previously treated with debulking surgery and radiation therapy, presented with recurrent primary cancer of the distal trachea and main bronchi. After complete tumour resection, the airway was replaced with a tailored bioartificial nanocomposite previously seeded with autologous bone-marrow mononuclear cells via a bioreactor for 36 h. Postoperative granulocyte colony-stimulating factor filgrastim (10 mu g/kg) and epoetin beta (40 000 UI) were given over 14 days. We undertook flow cytometry, scanning electron microscopy, confocal microscopy epigenetics, multiplex, miRNA, and gene expression analyses. Findings We noted an extracellular matrix-like coating and proliferating cells including a CD105+ subpopulation in the scaffold after the reseeding and bioreactor process. There were no major complications, and the patient was asymptomatic and tumour free 5 months after trans plantation. The bioartificial nanocomposite has patent anastomoses, lined with a vascularised neomucosa, and was partly covered by nearly healthy epithelium. Post-operatively, we detected a mobilisation of peripheral cells displaying increased mesenchymal stromal cell phenotype, and upregulation of epoetin receptors, antiapoptotic genes, and miR-34 and miR-449 biomarkers. These findings, together with increased levels of regenerative-associated plasma factors, strongly suggest stem-cell homing and cell-mediated wound repair, extracellular matrix remodelling, and neovascularisation of the graft. Interpretation Tailor-made bioartificial scaffolds can be used to replace complex airway defects. The bioreactor reseeding process and pharmacological-induced site-specific and graft-specific regeneration and tissue protection are key factors for successful clinical outcome.
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| 3. |
- Kenny, Gavin, et al.
(författare)
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Timescales of impact melt sheet crystallization and the precise age of the Morokweng impact structure, South Africa
- 2021
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Ingår i: Earth and Planetary Science Letters. - : Elsevier BV. - 0012-821X .- 1385-013X. ; 567
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Tidskriftsartikel (refereegranskat)abstract
- Impact cratering was a fundamental geological process in the early Solar System and, thus, constraining the timescales over which large impact structures cool is critical to understanding the thermal evolution and habitability of early planetary crusts. Additionally, impacts can induce mass extinctions and establishing the precise timing of the largest impacts on Earth can shed light on their role in such events. Here we report a high-precision zircon U–Pb geochronology study of the Morokweng impact structure, South Africa, which appears to have a maximum present-day diameter of ∼80 km. Our work provides (i) constraints on the cooling of large impact melt sheets, and (ii) a high-precision age for one of Earth's largest impact events, previously proposed to have overlapped the ca. 145 Ma Jurassic–Cretaceous (J–K) boundary. High-precision U–Pb geochronology was performed on unshocked, melt-grown zircon from five samples from a borehole through approximately 800 m of preserved impact melt rock. Weighted mean 206Pb/238U dates for the upper four samples are indistinguishable, with relative uncertainties (internal errors) of better than 20 ka, whereas the lowermost sample is distinguishably younger than the others. Thermal modeling suggests that the four indistinguishable dates are consistent with in situ conductive cooling of melt at this location within 30 kyr of the impact. The younger date from the lowest sample cannot be explained by in situ conductive cooling in line with the overlying samples, but the date is within the ∼65 kyr timeframe for melt-present conditions in footwall rocks below the impact melt sheet that is indicated by our thermal model. The Morokweng impact event is here constrained to 146.06 ± 0.16 Ma (2σ; full external uncertainty), which precedes current estimates of the age of the J–K boundary by several million years.
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| 4. |
- Niemi, MEK, et al.
(författare)
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- 2021
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swepub:Mat__t
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| 5. |
- Kanai, M, et al.
(författare)
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- 2023
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swepub:Mat__t
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