| 1. |
- Weinstein, John N., et al.
(författare)
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The cancer genome atlas pan-cancer analysis project
- 2013
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Ingår i: Nature Genetics. - : Springer Science and Business Media LLC. - 1061-4036 .- 1546-1718. ; 45:10, s. 1113-1120
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Forskningsöversikt (refereegranskat)abstract
- The Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large numbers of human tumors to discover molecular aberrations at the DNA, RNA, protein and epigenetic levels. The resulting rich data provide a major opportunity to develop an integrated picture of commonalities, differences and emergent themes across tumor lineages. The Pan-Cancer initiative compares the first 12 tumor types profiled by TCGA. Analysis of the molecular aberrations and their functional roles across tumor types will teach us how to extend therapies effective in one cancer type to others with a similar genomic profile. © 2013 Nature America, Inc. All rights reserved.
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| 2. |
- Ai, Songyuan, et al.
(författare)
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Ab Initio Calculations on Elastic Properties of IF Steel Matrix Phase at High Temperature Based on Lattice Expansion Theory
- 2020
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Ingår i: Metals. - : MDPI. - 2075-4701. ; 10:2
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Tidskriftsartikel (refereegranskat)abstract
- Elucidating the evolution law of the elastic properties of the matrix phase is of great significance for the control of steel properties and quality during continuous casting and subsequent heat treatment. In this paper, thermal expansion experiments and ab initio calculations are used to study the elastic properties of the interstitial free (IF) steel matrix phase in different magnetic states and crystal structures. The results show that the bulk modulus B and the tetragonal shear elastic constant C' for the entire temperature range decrease with increasing temperature, but C-44 is the opposite. While from paramagnetic (PM) to ferromagnetic (FM) state, C'(C-44) have changed similar to 188% (similar to 27%), B increases by similar to 55% during the crystal structure change (fcc -> bcc). With the FM to PM state, the Zener anisotropy parameter increases sharply, and Young's modulus decreases significantly in the [001] direction; the maximum difference is similar to 76 GPa. The evolution rate of average Young's modulus in single bcc-phase FM (fcc-phase PM) range reaches similar to 5.5(similar to 5.6) x 10(-2) GPa K-1. The research provides an effective method for ab initio calculation of the elastic properties of interstitial free and ultra-low carbon steels at high temperature, also furnishing a basis for the application of ab initio calculations to the high temperature performance of steel materials.
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| 3. |
- Bui Quang, Dong, et al.
(författare)
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Simultaneous determination of four organic acids in beverages by capillary electrophoresis coupled with ultraviolet detector
- 2022
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Ingår i: Vietnam Journal of Food Control. - : National Institute for Food Control. - 2615-9252. ; 5:2, s. 89-103
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Tidskriftsartikel (refereegranskat)abstract
- A simple and rapid capillary electrophoresis method with direct ultraviolet (UV) detection was set up for the determination of four organic acids in beverages. The method included dilution and filtration as simple sample preparation steps. The electrophoretic separation and detection of oxalic, malic, citric and lactic acids in wines and beers were performed in 8 min. For the method validation, linearity, detection and quantification limits, repeatability and recovery in wine and beer matrices were studied. Good linearity was observed from 25 to 500 mg/L for all acids excluding lactic acid, for which it started from 50 mg/L. The limits of quantitation of oxalic, malonic and citric acid were set 9.5 to 28.5 mg/L. Repeatability of this method was from 3.2 to 7.3%, recoveries ranged from 90.1 to 110.1%. The validated method was applied to the analysis of different wines and beers and showed great variability in their composition.
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| 4. |
- Chatterjee, Saikat, et al.
(författare)
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SEK: Sparsity exploiting k-mer-based estimation of bacterial community composition
- 2014
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Ingår i: Bioinformatics. - : Oxford University Press. - 1460-2059 .- 1367-4803 .- 1367-4811. ; 30:17, s. 2423-2431
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Tidskriftsartikel (refereegranskat)abstract
- Motivation: Estimation of bacterial community composition from a high-throughput sequenced sample is an important task in metagenomics applications. As the sample sequence data typically harbors reads of variable lengths and different levels of biological and technical noise, accurate statistical analysis of such data is challenging. Currently popular estimation methods are typically time-consuming in a desktop computing environment.Results: Using sparsity enforcing methods from the general sparse signal processing field (such as compressed sensing), we derive a solution to the community composition estimation problem by a simultaneous assignment of all sample reads to a pre-processed reference database. A general statistical model based on kernel density estimation techniques is introduced for the assignment task, and the model solution is obtained using convex optimization tools. Further, we design a greedy algorithm solution for a fast solution. Our approach offers a reasonably fast community composition estimation method, which is shown to be more robust to input data variation than a recently introduced related method.Availability and implementation: A platform-independent Matlab implementation of the method is freely available at http://www.ee.kth.se/ctsoftware; source code that does not require access to Matlab is currently being tested and will be made available later through the above Web site.
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| 5. |
- Zhang, Meizhen, et al.
(författare)
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Fabrication and Application of Ag@SiO2/Au Core-Shell SERS Composite in Detecting Cu2+ in Water Environment
- 2024
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Ingår i: Molecules. - 1431-5157 .- 1420-3049. ; 29:7
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Tidskriftsartikel (refereegranskat)abstract
- A sensitive and simple method for detecting Cu2+ in the water source was proposed by using surface-enhanced Raman scattering spectroscopy (SERS) based on the Ag@SiO2/Au core-shell composite. The Ag@SiO2 SERS tag was synthesized by a simple approach, in which Ag nanoparticles were first embedded with Raman reporter PATP and next coated with a SiO2 shell. The Ag@SiO2 nanoparticles had strong stability even in a high-concentration salty solution, and there were no changes to their properties and appearance within one month. The Ag@SiO2/Au composite was fabricated through a controllable self-assemble process. L-cysteine was decorated on the surface of a functionalized Ag@SiO2/Au composite, as the amino and carboxyl groups of it can form coordinate covalent bond with Cu2+, which shows that the Ag@SiO2/Au composite labelled with L-cysteine has excellent performance for the detection of Cu2+ in aqueous media. In this study, the SERS detection of Cu2+ was carried out using Ag@SiO2 nanoparticles, and the limit of detection (LOD) as low as 0.1 mg/L was achieved.
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