| 1. |
- Berndt, Sonja I., et al.
(författare)
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Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture
- 2013
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Ingår i: Nature Genetics. - : Springer Science and Business Media LLC. - 1061-4036 .- 1546-1718. ; 45:5, s. 501-U69
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Tidskriftsartikel (refereegranskat)abstract
- Approaches exploiting trait distribution extremes may be used to identify loci associated with common traits, but it is unknown whether these loci are generalizable to the broader population. In a genome-wide search for loci associated with the upper versus the lower 5th percentiles of body mass index, height and waist-to-hip ratio, as well as clinical classes of obesity, including up to 263,407 individuals of European ancestry, we identified 4 new loci (IGFBP4, H6PD, RSRC1 and PPP2R2A) influencing height detected in the distribution tails and 7 new loci (HNF4G, RPTOR, GNAT2, MRPS33P4, ADCY9, HS6ST3 and ZZZ3) for clinical classes of obesity. Further, we find a large overlap in genetic structure and the distribution of variants between traits based on extremes and the general population and little etiological heterogeneity between obesity subgroups.
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| 2. |
- Shungin, Dmitry, et al.
(författare)
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New genetic loci link adipose and insulin biology to body fat distribution.
- 2015
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 518:7538, s. 187-378
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Tidskriftsartikel (refereegranskat)abstract
- Body fat distribution is a heritable trait and a well-established predictor of adverse metabolic outcomes, independent of overall adiposity. To increase our understanding of the genetic basis of body fat distribution and its molecular links to cardiometabolic traits, here we conduct genome-wide association meta-analyses of traits related to waist and hip circumferences in up to 224,459 individuals. We identify 49 loci (33 new) associated with waist-to-hip ratio adjusted for body mass index (BMI), and an additional 19 loci newly associated with related waist and hip circumference measures (P < 5 × 10(-8)). In total, 20 of the 49 waist-to-hip ratio adjusted for BMI loci show significant sexual dimorphism, 19 of which display a stronger effect in women. The identified loci were enriched for genes expressed in adipose tissue and for putative regulatory elements in adipocytes. Pathway analyses implicated adipogenesis, angiogenesis, transcriptional regulation and insulin resistance as processes affecting fat distribution, providing insight into potential pathophysiological mechanisms.
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| 3. |
- Korhonen, Emilia A., et al.
(författare)
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Lymphangiogenesis requires Ang2/Tie/PI3K signaling for VEGFR3 cell-surface expression
- 2022
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Ingår i: Journal of Clinical Investigation. - : American Society for Clinical Investigation. - 0021-9738 .- 1558-8238. ; 132:15
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Tidskriftsartikel (refereegranskat)abstract
- Vascular endothelial growth factor C (VEGF-C) induces lymphangiogenesis via VEGF receptor 3 (VEGFR3), which is encoded by the most frequently mutated gene in human primary lymphedema. Angiopoietins (Angs) and their Tie receptors regulate lymphatic vessel development, and mutations of the ANGPT2 gene were recently found in human primary lymphedema. However, the mechanistic basis of Ang2 activity in lymphangiogenesis is not fully understood. Here, we used gene deletion, blocking Abs, transgene induction, and gene transfer to study how Ang2, its Tie2 receptor, and Tie1 regulate lymphatic vessels. We discovered that VEGF-C???induced Ang2 secretion from lymphatic endothelial cells (LECs) was involved in full Akt activation downstream of phosphoinositide 3 kinase (PI3K). Neonatal deletion of genes encoding the Tie receptors or Ang2 in LECs, or administration of an Ang2-blocking Ab decreased VEGFR3 presentation on LECs and inhibited lymphangiogenesis. A similar effect was observed in LECs upon deletion of the PI3K catalytic p110?? subunit or with small -molecule inhibition of a constitutively active PI3K located downstream of Ang2. Deletion of Tie receptors or blockade of Ang2 decreased VEGF-C???induced lymphangiogenesis also in adult mice. Our results reveal an important crosstalk between the VEGF-C and Ang signaling pathways and suggest new avenues for therapeutic manipulation of lymphangiogenesis by targeting Ang2/Tie/PI3K signaling.
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| 4. |
- Locke, Adam E, et al.
(författare)
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Genetic studies of body mass index yield new insights for obesity biology.
- 2015
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 518:7538, s. 197-401
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Tidskriftsartikel (refereegranskat)abstract
- Obesity is heritable and predisposes to many diseases. To understand the genetic basis of obesity better, here we conduct a genome-wide association study and Metabochip meta-analysis of body mass index (BMI), a measure commonly used to define obesity and assess adiposity, in up to 339,224 individuals. This analysis identifies 97 BMI-associated loci (P < 5 × 10(-8)), 56 of which are novel. Five loci demonstrate clear evidence of several independent association signals, and many loci have significant effects on other metabolic phenotypes. The 97 loci account for ∼2.7% of BMI variation, and genome-wide estimates suggest that common variation accounts for >20% of BMI variation. Pathway analyses provide strong support for a role of the central nervous system in obesity susceptibility and implicate new genes and pathways, including those related to synaptic function, glutamate signalling, insulin secretion/action, energy metabolism, lipid biology and adipogenesis.
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| 5. |
- Ried, Janina S., et al.
(författare)
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A principal component meta-analysis on multiple anthropometric traits identifies novel loci for body shape
- 2016
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 7
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Tidskriftsartikel (refereegranskat)abstract
- Large consortia have revealed hundreds of genetic loci associated with anthropometric traits, one trait at a time. We examined whether genetic variants affect body shape as a composite phenotype that is represented by a combination of anthropometric traits. We developed an approach that calculates averaged PCs (AvPCs) representing body shape derived from six anthropometric traits (body mass index, height, weight, waist and hip circumference, waist-to-hip ratio). The first four AvPCs explain >99% of the variability, are heritable, and associate with cardiometabolic outcomes. We performed genome-wide association analyses for each body shape composite phenotype across 65 studies and meta-analysed summary statistics. We identify six novel loci: LEMD2 and CD47 for AvPC1, RPS6KA5/C14orf159 and GANAB for AvPC3, and ARL15 and ANP32 for AvPC4. Our findings highlight the value of using multiple traits to define complex phenotypes for discovery, which are not captured by single-trait analyses, and may shed light onto new pathways.
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| 6. |
- Ammenberg, Jonas, 1973-, et al.
(författare)
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Perspectives on biomethane as a transport fuel within acircular economy, energy, and environmental system
- 2021
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- The literature indicates that the life cycle costs of biomethane fueled light vehicles may be 15 to 20% highe rthan for similar petrol and diesel fueled vehicles, while liquid biomethane fueled heavy duty trucks may have similar life cycle costs to diesel. However, such an analysis can be two dimensional and limited in the message it conveys. On one hand the acceptance of diesel fueled trucks and buses will be limited due to the climate emergency and air pollution and after 2030 diesel may not be the competition for biomethane anymore. On the otherhand, biomethane production is part of a larger circular economy, energy, and environmental system. It is verydifficult to divorce the energy vector, biomethane, from the system through which it is produced. In essence biomethane can be considered as one of the products or services of a broad biogas system.An advantage of biogas is that it can be produced from most wet organic wastes or by-products, includingfor food waste, animal by-products, (such as manure), agricultural residues, sewage sludge, industrial biowaste (such as from slaughterhouses and food and beverage processing industries). Biogas production is an element in the environmental management of such wastes; biogas plants can also deliver digestate, which contains most ofthe nutrients in the feedstock and can be an excellent biofertilizer. In addition, it is possible to utilize the carbon dioxide removed in upgrading biogas to biomethane as a product with added value. The resource of biomethane is very significant in considering the vast amounts of organic wastes landfilled around the world each year, that instead could be used to produce biogas, biofertilizers and food grade CO2 while improving the environment through reduced fugitive methane emissions and improved water quality. Furthermore, the application of biogas systems in bio-industrial contexts (such as paper mills, food production facilities, or other types of biorefineries) has huge potential to decarbonize industry while significantly increasing the resource of biomethane. Due to the multifunctionality of biomethane solutions, broad assessment methods are needed to grasp thewide spectrum of relevant factors when comparing different technologies:• Biomethane has a competitive performance compared with fossil fuels and other biofuels on a whole lifecycle analysis and is particularly suited to long distance heavy vehicles.• Biomethane from manure, residues, waste & catch crops is estimated to have low GHG emissions ascompared to other renewable fuels.• Biomethane may contribute to reduced air pollution in comparison with diesel, petrol, and other biofuels.• Biomethane can contribute to a substantial reduction in acidification compared with fossil fuels.• Biomethane may contribute to significantly reduced noise levels in comparison with diesel heavy goodsvehicles.• Well-designed and applied biogas systems may be essential to transform conventional farming to moresustainable farming and to organic farming.• Common types of biogas solutions provide essential sociotechnical systems services as components ofsystems for waste and (waste) water management.• Biogas solutions may importantly contribute to improved energy supply/security and flexibility.Natural gas systems should be a facilitator of the introduction of biomethane for transport, but the sustainability problems associated with natural gas negatively impact the view of biomethane. This is where arguments amongst the renewable sector actors can hinder progress. Biomethane and (power to methane) can utilize the existing gas grid and accelerate progress to decarbonization of the overall energy sector beyond just electricity and also to decarbonize chemical (such as ammonia and methanol) and steel production. This should be advantageous especially when realizing that more energy is procured from the natural gas grid than the electricity gridin the EU and the US; however, suggestions that biomethane is only greenwashing the natural gas industry, and in doing so extending the lifetime of natural gas, greatly impedes this progress.This report provides exemplars of very good biomethane based transport solutions, with a high technologicalreadiness level for all elements of the chain from production to vehicles. Transport biomethane sits well in the broad circular economy, energy, and environmental system providing services across a range of sectors including reduction in fugitive methane emissions from slurries, treatment of residues, environmental protection, provision of biofertiliser, provision of food grade CO2 and a fuel readily available for long distance heavy haulage. What we do not have is time to postpone the sustainable implementation of such circular economy biomethane systems as the climate emergency will not wait for absolutely perfect zero emission solutions; should they exist.
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| 7. |
- Hagman, Linda, 1991-
(författare)
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Creating value from bio-residuals : Biogas solutions for biobased industries in Scandinavia
- 2022
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- This thesis focuses on biogas solutions for biobased industries as substrate management or energy providers. It investigates how such solutions are set up, what factors are important for their development, the effects on society and biobased industries, and the possibility of having biogas solutions as part of a sustainability strategy for biobased industries. The thesis has its scientific foundation in industrial ecology, the resource-efficient bioeconomy, and biogas solutions. The thesis is a synthesis of six appended papers focusing on value-creation, development, strategies, and the performance of biogas solutions in biobased industries.The results show that biobased industries can gain competitiveness, improved sustainability performance, and reduced costs through biogas solutions. The development of biogas solutions for biobased industries is improved through collaboration between actors where win-win solutions are identified, and resources are recovered locally. Biogas solutions will have an important role in recovering nutrients and improving resource efficiency of biobased industrial systems. This research contributes with the knowledge to implement more biogas solutions for biobased industries in different parts of the world by pointing out, additional values provided, factors to consider for the development, and the biobased industries’ strategic interest in biogas solutions.
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| 8. |
- Hellamand, Pasoon, et al.
(författare)
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Sex Differences in the Effectiveness of First-Line Tumor Necrosis Factor Inhibitors in Psoriatic Arthritis: Results From the European Spondyloarthritis Research Collaboration Network
- 2024
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Ingår i: ARTHRITIS & RHEUMATOLOGY. - 2326-5191 .- 2326-5205.
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Tidskriftsartikel (refereegranskat)abstract
- Objective: Women with psoriatic arthritis (PsA) may have reduced tumor necrosis factor inhibitor (TNFi) effectiveness compared to men. We examined sex differences in treatment response and retention rates during 24 months of follow-up among patients with PsA initiating their first TNFi. Methods: Data from patients with PsA across 13 European Spondyloarthritis Research Collaboration Network registries starting their first TNFi were pooled. Logistic regression was used to analyze the association between sex and treatment response using low disease activity (LDA) according to the Disease Activity Score in 28 joints using the C-reactive protein level (DAS28-CRP) (<3.2) at six months as the primary outcome. Analyses were adjusted for age, country, conventional synthetic disease-modifying antirheumatic drug treatment, and TNFi start year. Retention rates were explored using the Kaplan-Meier estimator. Results: We analyzed the treatment response of 7,679 patients with PsA (50% women) with available data on LDA at six months. At baseline, women and men had similar characteristics, including mean DAS28-CRP (women vs men, 4.4 [SD 1.2] vs 4.2 [SD 1.2]), though patient-reported outcome measures were worse in women. At six months, 64% of women and 78% of men had LDA (relative risk [RR] 0.82; 95% confidence interval [CI] 0.80-0.84). This difference was similar after adjustment (RR 0.83; 95% CI 0.81-0.85). TNFi retention rates were evaluated in 17,842 patients with PsA. Women had significantly lower retention rates than men at all time points (women 79%, 64%, and 50% vs men 88%, 77%, and 64% at 6, 12, and 24 months, respectively). Conclusion: Despite comparable disease characteristics at baseline, women with PsA have reduced treatment response and retention rates to their first TNFi, highlighting the need to consider sex differences in PsA research and management.
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| 9. |
- Joshi, Peter K, et al.
(författare)
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Directional dominance on stature and cognition in diverse human populations
- 2015
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 523:7561, s. 459-462
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Tidskriftsartikel (refereegranskat)abstract
- Homozygosity has long been associated with rare, often devastating, Mendelian disorders, and Darwin was one of the first to recognize that inbreeding reduces evolutionary fitness. However, the effect of the more distant parental relatedness that is common in modern human populations is less well understood. Genomic data now allow us to investigate the effects of homozygosity on traits of public health importance by observing contiguous homozygous segments (runs of homozygosity), which are inferred to be homozygous along their complete length. Given the low levels of genome-wide homozygosity prevalent in most human populations, information is required on very large numbers of people to provide sufficient power. Here we use runs of homozygosity to study 16 health-related quantitative traits in 354,224 individuals from 102 cohorts, and find statistically significant associations between summed runs of homozygosity and four complex traits: height, forced expiratory lung volume in one second, general cognitive ability and educational attainment (P < 1 × 10(-300), 2.1 × 10(-6), 2.5 × 10(-10) and 1.8 × 10(-10), respectively). In each case, increased homozygosity was associated with decreased trait value, equivalent to the offspring of first cousins being 1.2 cm shorter and having 10 months' less education. Similar effect sizes were found across four continental groups and populations with different degrees of genome-wide homozygosity, providing evidence that homozygosity, rather than confounding, directly contributes to phenotypic variance. Contrary to earlier reports in substantially smaller samples, no evidence was seen of an influence of genome-wide homozygosity on blood pressure and low density lipoprotein cholesterol, or ten other cardio-metabolic traits. Since directional dominance is predicted for traits under directional evolutionary selection, this study provides evidence that increased stature and cognitive function have been positively selected in human evolution, whereas many important risk factors for late-onset complex diseases may not have been.
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| 10. |
- Lu, Yingchang, et al.
(författare)
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New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk
- 2016
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 7
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Tidskriftsartikel (refereegranskat)abstract
- To increase our understanding of the genetic basis of adiposity and its links to cardiometabolic disease risk, we conducted a genome-wide association meta-analysis of body fat percentage (BF%) in up to 100,716 individuals. Twelve loci reached genome-wide significance (P<5 × 10(-8)), of which eight were previously associated with increased overall adiposity (BMI, BF%) and four (in or near COBLL1/GRB14, IGF2BP1, PLA2G6, CRTC1) were novel associations with BF%. Seven loci showed a larger effect on BF% than on BMI, suggestive of a primary association with adiposity, while five loci showed larger effects on BMI than on BF%, suggesting association with both fat and lean mass. In particular, the loci more strongly associated with BF% showed distinct cross-phenotype association signatures with a range of cardiometabolic traits revealing new insights in the link between adiposity and disease risk.
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