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| 2. |
- Berteaux, Dominique, et al.
(författare)
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Harmonizing circumpolar monitoring of Arctic fox : benefits, opportunities, challenges and recommendations
- 2017
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Ingår i: Polar Research. - : Norwegian Polar Institute. - 0800-0395 .- 1751-8369. ; 36:suppl. 1
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Tidskriftsartikel (refereegranskat)abstract
- The biodiversity working group of the Arctic Council has developed pan-Arctic biodiversity monitoring plans to improve our ability to detect, understand and report on long-term change in Arctic biodiversity. The Arctic fox (Vulpes lagopus) was identified as a target of future monitoring because of its circumpolar distribution, ecological importance and reliance on Arctic ecosystems. We provide the first exhaustive survey of contemporary Arctic fox monitoring programmes, describing 34 projects located in eight countries. Monitored populations covered equally the four climate zones of the species’ distribution, and there were large differences between populations in long-term trends, multi-annual fluctuations, diet composition, degree of competition with red fox and human interferences. Den density, number of active dens, number of breeding dens and litter size were assessed in almost all populations, while projects varied greatly with respect to monitoring of other variables indicative of population status, ecosystem state or ecosystem function. We review the benefits, opportunities and challenges to increased integration of monitoring projects. We argue that better harmonizing protocols of data collection and data management would allow new questions to be addressed while adding tremendous value to individual projects. However, despite many opportunities, challenges remain. We offer six recommendations that represent decisive progress toward a better integration of Arctic fox monitoring projects. Further, our work serves as a template that can be used to integrate monitoring efforts of other species, thereby providing a key step for future assessments of global biodiversity.
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| 3. |
- Choi, Seoyun, et al.
(författare)
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Parent personality is linked to juvenile mortality and stress behavior in the arctic fox (Vulpes lagopus)
- 2019
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Ingår i: Behavioral Ecology and Sociobiology. - : Springer Science and Business Media LLC. - 0340-5443 .- 1432-0762. ; 73:12
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Tidskriftsartikel (refereegranskat)abstract
- Life history theory predicts that individuals will differ in their risk-taking behavior according to their expected future fitness. Understanding consequences of such individual variation within a behavioral trait is crucial in explaining potential trade-offs between different traits and in predicting future dynamics in changing environments. Here, we studied individuals in a wild arctic fox population to explore if (1) individual variation in risk-taking behaviors of adult arctic foxes and in stress-dealing behaviors of their juveniles exist and are consistent over time to verify the existence of personality traits; (2) those behavioral traits in adults and juveniles are correlated; (3) they can explain fitness-related components (i.e., juvenile physical condition, mortality rate). We presented simple field experiments assessing behavioral traits by observing adult reactions toward approaching observers, and juvenile behaviors while trapping. Through the experiments, we found highly consistent individual variation of adults in vigilance and boldness levels, and more flexible juvenile behavioral traits categorized as investigating, passive, and escaping. The offspring of bolder adults exhibited more investigating behaviors and were less passive than the offspring of shy adults. Juvenile physical condition was not related to their mortality nor any behavioral traits of either parents or themselves. Lastly, highly investigating and active juveniles with bold parents had significantly lower mortality rates. This shows that interactions between parent personality and juvenile behavioral traits affect a fitness-related component in the life history of individuals. Significance statement The recent surge of interest in consistent individual difference in behavior, also called as animal personality, has already focused on its fitness consequences, but few studies have investigated the interactions between parent and offspring personality, and their ecological consequences. Moreover, this has rarely been studied in wild canids. The arctic fox is a charismatic species showing wide individual variation in behaviors. They live in highly fluctuating tundra ecosystems providing different selection regimes, making it even more eco-evolutionarily intriguing. Yet, few studies looked into behavioral traits and their importance in this system. While introducing simple methods to improve personality research in the wild, we provide a unique example of how variation in both parents and their juveniles collectively works for group dynamics in a cyclic population. This provides a firm basic for understanding behavior-mediated dynamics and opens up broader questions on how fluctuating environments exert varying pressures on individual differences.
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| 4. |
- Dhapola, Parashar, et al.
(författare)
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Scarf enables a highly memory-efficient analysis of large-scale single-cell genomics data
- 2022
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 13
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Tidskriftsartikel (refereegranskat)abstract
- As the scale of single-cell genomics experiments grows into the millions, the computational requirements to process this data are beyond the reach of many. Herein we present Scarf, a modularly designed Python package that seamlessly interoperates with other single-cell toolkits and allows for memory-efficient single-cell analysis of millions of cells on a laptop or low-cost devices like single-board computers. We demonstrate Scarf's memory and compute-time efficiency by applying it to the largest existing single-cell RNA-Seq and ATAC-Seq datasets. Scarf wraps memory-efficient implementations of a graph-based t-stochastic neighbour embedding and hierarchical clustering algorithm. Moreover, Scarf performs accurate reference-anchored mapping of datasets while maintaining memory efficiency. By implementing a subsampling algorithm, Scarf additionally has the capacity to generate representative sampling of cells from a given dataset wherein rare cell populations and lineage differentiation trajectories are conserved. Together, Scarf provides a framework wherein any researcher can perform advanced processing, subsampling, reanalysis, and integration of atlas-scale datasets on standard laptop computers. Scarf is available on Github: https://github.com/parashardhapola/scarf .
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| 5. |
- Erlandsson, Rasmus, et al.
(författare)
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An innovative use of orthophotos - possibilities to assess plant productivity from colour infrared aerial orthophotos
- 2019
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Ingår i: Remote Sensing in Ecology and Conservation. - : Wiley. - 2056-3485. ; 5:4, s. 291-301
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Tidskriftsartikel (refereegranskat)abstract
- Studies of ecological processes should focus on a relevant spatial scale, as crude spatial resolution will fail to detect small scale variation which is of potentially critical importance. Remote sensing methods based on multispectral satellite images are used to assess primary productivity and aerial photos to map vegetation structure. Both methods are based on the principle that photosynthetically active vegetation has a characteristic spectral signature. Yet they are applied differently due to technical differences. Satellite images are suitable for calculations of vegetation indices, for example Normalized Difference Vegetation Index (NDVI). Colour infrared aerial photography was developed for visual interpretation and never regarded for calculation of indices since the spectrum recorded and post processing differ from satellite images. With digital cameras and improved techniques for generating colour infrared orthophotos, the implications of these differences are uncertain and should be explored. We tested if plant productivity can be assessed using colour infrared aerial orthophotos (0.5 m resolution) by applying the standard NDVI equation. With 112 vegetation samples as ground truth, we evaluated an index that we denote rel‐NDVIortho in two areas of the Fennoscandian mountain tundra. We compared the results with conventional SPOT5 satellite‐based NDVI (10 m resolution). rel‐NDVIortho was related to plant productivity (Northern area: P = <0.001, R2 = 0.73; Southern area: P = <0.001, R2 = 0.39), performed similar to SPOT5 satellite NDVI (Northern area: P = <0.001, R2 = 0.76; Southern area: P = <0.001, R2 = 0.40) and the two methods were highly correlated (cor = 0.95 and cor = 0.84). Despite different plant composition, the results were consistent between areas. Our results suggest that vegetation indices based on colour infrared aerial orthophotos can be a valuable tool in the remote sensing toolbox, offering a high‐spatial resolution proxy for plant productivity with less signal degradation due to atmospheric interference and clouds, compared to satellite images. Further research should aim to investigate if the method is applicable to other ecosystems.
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| 6. |
- Erlandsson, Rasmus, et al.
(författare)
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Indirect effects of prey fluctuation on survival of juvenile arctic fox (Vulpes lagopus) : a matter of maternal experience and litter attendance
- 2017
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Ingår i: Canadian Journal of Zoology. - : Canadian Science Publishing. - 0008-4301 .- 1480-3283. ; 95, s. 239-246
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Tidskriftsartikel (refereegranskat)abstract
- Reproductive experience affects juvenile survival in a wide range of species with possible links to differences in foraging capacity and predation. Using supplementary feeding, we aimed to limit direct effect of prey abundance to investigate indirect effects of small-rodent availability and maternal experience on juvenile summer survival rates in an endangered population of arctic fox (Vulpes lagopus (L., 1758)). We used data spanning 7 years, included a complete small-rodent cycle, comprising 49 litters and 394 cubs. The effect of small-rodent abundance on juvenile survival depended on maternal breeding experience. Cubs born by first-time-breeding females had lower survival rate when small-rodent abundance was low compared with juveniles born to experienced mothers who remained unaffected. It was unlikely due to starvation, as physical condition was unrelated to survival. Instead, we favour the explanation that intraguild predation was an important cause of mortality. There was a negative relationship between survival and amount of time cubs were left unattended, suggesting that parental behaviour affected predation. We propose that a prey switch related to small-rodent abundance caused fluctuations in intraguild predation pressure and that inexperienced females were less able to cope with predation when small rodents were scarce.
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| 9. |
- Erlandsson, Rasmus, 1985-, et al.
(författare)
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Resources and predation : drivers of sociality in a cyclic mesopredator
- 2022
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Ingår i: Oecologia. - : Springer Science and Business Media LLC. - 0029-8549 .- 1432-1939. ; 198:2, s. 381-392
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Tidskriftsartikel (refereegranskat)abstract
- In socially flexible species, the tendency to live in groups is expected to vary through a trade-off between costs and benefits, determined by ecological conditions. The Resource Dispersion Hypothesis predicts that group size changes in response to patterns in resource availability. An additional dimension is described in Hersteinsson's model positing that sociality is further affected by a cost-benefit trade-off related to predation pressure. In the arctic fox (Vulpes lagopus), group-living follows a regional trade-off in resources' availability and intra-guild predation pressure. However, the effect of local fluctuations is poorly known, but offers an unusual opportunity to test predictions that differ between the two hypotheses in systems where prey availability is linked to intra-guild predation. Based on 17-year monitoring of arctic fox and cyclic rodent prey populations, we addressed the Resource Dispersion Hypothesis and discuss the results in relation to the impact of predation in Hersteinsson's model. Group-living increased with prey density, from 7.7% (low density) to 28% (high density). However, it remained high (44%) despite a rodent crash and this could be explained by increased benefits from cooperative defence against prey switching by top predators. We conclude that both resource abundance and predation pressure are factors underpinning the formation of social groups in fluctuating ecosystems.
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| 10. |
- Erlandsson, Rasmus, 1985-
(författare)
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Spatial and temporal population dynamics in the mountain tundra – mesopredator and prey
- 2019
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- It is well known that competition, predation and fluctuating food resources can have strong effect on individual fitness and population dynamics. The complexity of natural systems can make it complicate to disentangle those processes, but environments with relatively simple food webs, and strong cyclic population dynamics offer contrasting conditions resembling experimental treatments. This thesis concerns the spatial and temporal implications of fluctuations in small rodent abundance on two trophic levels in a highly cyclic ecosystem, the Scandinavian mountain tundra. The first two chapters focus on plant biomass and spatiotemporal distribution in the Norwegian lemming (Lemmus lemmus), while the three last papers focus on the direct and indirect effects of small rodent fluctuations and territory quality on reproductive success, juvenile survival and group living in a lemming specialist mesopredator, the arctic fox (Vulpes lagopus). By developing, validating and applying a novel application of aerial photos for remote sensing of plant biomass (Chapter I), we found that food availability predicted lemming distribution during population peaks, but that they were more habitat specific during increase years when intraspecific competition was lower (Chapter II). Arctic fox reproduction is tightly connected to small rodent abundance but the effects of geographical variation in food availability is less well known. We used 17 years of population surveys of an arctic fox subpopulation in mid Sweden (Helagsfjällen) to investigate potential effects. During small rodent increase years, we found that arctic fox litter sizes were smaller in territories of intermediate plant productivity, compared to both more and less productive territories (Chapter III). This could be an effect of limited food availability together with increased presence of red foxes (Vulpes vulpes), a stronger and potentially lethal competitor. However, when small rodents peaked, and competition would be expected to decrease, we saw no effect of territory productivity. Based on a smaller data set concerning juvenile summer survival, we found that the mortality rate among juveniles born by first time breeding arctic fox females were more sensitive to low small rodent prey abundance (Chapter IV). We explain it with an increased predation pressure from top-predators that switch from small rodents to alternative prey when small rodents decline, as suggested by an observed positive effect on juvenile survival by adult presence on den sites. Arctic foxes are socially flexible, and several adults can share a den with the resident pair, potentially increasing juvenile survival and help in territorial defence. Returning to the 17-year data set, we tested the Resource Dispersion Hypothesis predicting that increased resource availability should increase group size (Chapter V). We found support for this prediction as group living increased during the small rodent peak phase. However, it remained unexpectedly high during the decrease phase, when resources are scarce. This could however be related to increased predation pressure, and an increasing benefit of group living.
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