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- Meng, Qinglai, et al.
(författare)
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Rapid personalized AMR diagnostics using two-dimensional antibiotic resistance profiling strategy employing a thermometric NDM-1 biosensor
- 2021
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Ingår i: Biosensors and Bioelectronics. - : Elsevier BV. - 0956-5663. ; 193
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Tidskriftsartikel (refereegranskat)abstract
- Antimicrobial resistance (AMR) threatens global public health and modern surgical medicine. Expression of β-lactamase genes is the major mechanism by which pathogens become antibiotic resistant. Pathogens expressing extended spectrum β-lactamases (ESBL) and carbapenemases (CP) are especially difficult to treat and are associated with increased hospitalization and mortality rates. Despite considerable effort, identification of ESBLs and CPs in a clinically relevant timeframe remains challenging. In this study, a two-dimensional AMR profiling assay strategy was developed employing panels of antibiotics (penicillins, cephamycins, oximino-cephalosporins and carbapenems) and β-lactamases inhibitors (avibactam and EDTA). The assay required the development of a novel biosensor that employed New Delhi metallo-β-lactamase-1 (NDM-1) as the sensing element. Functionally probing β-lactamase activity using substrates and inhibitors combinatorically increased the informational content that enabled the development of assays capable of simultaneous, differential identification of multiple β-lactamases expressed in a single bacterial isolate. More specifically, the assay enabled the simultaneous identification of ESBL and CP in mock samples, as well as in an engineered construct which co-expressed these β-lactamases. The NDM-1 biosensor assay was 16 times and 8 times more sensitive than the ESBL Nordmann/Dortet/Poirel (NDP) and Carba Nordmann/Poirel (NP) assays, respectively. In a retrospective study, NDM-1 biosensor assays were able to differentially identify ESBLs, metallo-CPs and serine-CPs β-lactamases in 23 clinical isolates with 100% accuracy. An assay algorithm was developed which accelerated data analytics reducing turnaround to <1 h. The assay strategy integrated with AI-based data analytics has the potential to provide physicians with a comprehensive readout of patient AMR status.
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| 2. |
- Zhang, Lei, et al.
(författare)
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Diverse cuticular remains in Cambrian (Series 2) SSF assemblages from China and the pioneer metazoan colonization of offshore environments
- 2021
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Ingår i: Palaeogeography, Palaeoclimatology, Palaeoecology. - : Elsevier BV. - 0031-0182. ; 567
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Tidskriftsartikel (refereegranskat)abstract
- Our understanding of the early Cambrian bioradiation is largely driven by the contrasting information obtained from small skeletal fossils (SSF) and various types of exceptionally preserved fossils from different parts of the world. In this study, a new ‘Orsten’-type fossil Lagerstätte is reported from the Cambrian Series 2 upper Shuijingtuo Formation in the eastern Three Gorges area, South China. The Shuijingtuo Formation yielded a range of microscopic fragments of metazoan cuticles as well as fragments of possible epithelial tissue. Seventeen different types of micro-ornamentation patterns are recognized on the surface of these cuticular fragments. Based on comparisons with fossil organisms recorded from coeval strata elsewhere, as well as extant relatives, possible affinities with arthropods, palaeoscolecids, acrotretid brachiopods and mollusks are discussed. This ‘Orsten’-type fossil assemblage was deposited in offshore environments, and the lack of evidence for long-distance transportation indicates that a highly diverse fauna was present in, or very close to, the relatively deep shelf settings in the Three Gorges area during the early Cambrian (Epoch 2, Age 3). The invasion of metazoans into deeper, offshore environments could have closely followed, or even been coeval, with their radiation in relatively shallow water settings. Thus, albeit highly fragmented, such cuticular fossils can aid in providing a more complete picture of the Cambrian bioradiation.
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