| 1. |
- Hudson, Lawrence N, et al.
(författare)
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The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project
- 2017
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Ingår i: Ecology and Evolution. - : John Wiley & Sons. - 2045-7758. ; 7:1, s. 145-188
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Tidskriftsartikel (refereegranskat)abstract
- The PREDICTS project-Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)-has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.
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| 2. |
- Fernández-Calviño, David, et al.
(författare)
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Using pine bark and mussel shell amendments to reclaim microbial functions in a Cu polluted acid mine soil
- 2018
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Ingår i: Applied Soil Ecology. - : Elsevier BV. - 0929-1393. ; 127, s. 102-111
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Tidskriftsartikel (refereegranskat)abstract
- An extremely acid mine soil polluted with Cu was amended with pine bark, crushed mussel shell or a 1:1 mixture of these two by-products. The performance of the soil microbial community was measured as the bacterial and fungal community growth, which were monitored during 2 years following the amendments. Pine bark caused significant increases of microbial growth rates, but with distinct differences between fungal and bacterial groups. Bacterial growth increased transiently at intermediate rates of pine bark applications, but returned to control rates within 2 years of application. In contrast, pine bark applications consistently increased fungal growth with effects that were maintained throughout the study period. The addition of only crushed mussel shell to the mine soil caused very delayed positive effects on the bacterial growth and almost no significant effects on the fungal growth. However, the combination of pine bark with crushed mussel shells 1:1 mixtures caused positive growth responses of both bacteria and fungi that remained persistent throughout the 2 years of study. Fungal and bacterial growth were both suppressed in the mine soil by the lack of organic matter. In addition, bacterial growth was also secondarily suppressed by acidity, and hence, when organic matter (pine bark) additions were combined with pH increases (crushed mussel shell additions), bacterial growth was additionally stimulated. In conclusion, the proposed mixture of by-products (pine bark and crushed mussel shell) is suggested as a promising reclamation strategy for acid mine soils. These results also suggest that in soils like that studied here the organic matter limitation is a more important factor than the soil pH and Cu availability for fungal and bacterial performance.
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| 3. |
- Abbondanno, U, et al.
(författare)
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The data acquisition system of the neutron time-of-flight facility n_TOF at CERN
- 2005
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Ingår i: Nuclear Instruments and Methods in Physics Research Section A. - : Elsevier BV. - 0168-9002 .- 1872-9576. ; 538:1-3, s. 692-702
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Tidskriftsartikel (refereegranskat)abstract
- The n_TOF facility at CERN has been designed for the measurement of neutron capture, fission and (n, xn) cross-sections with high accuracy. This requires a flexible and-due to the high instantaneous neutron flux-almost dead time free data acquisition system. A scalable and versatile data solution has been designed based on 8-bit flash-ADCs with sampling rates up to 2 GHz and 8 Mbyte memory buffer. The software is written in C and C++ and is running on PCs equipped with RedHat Linux.
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| 4. |
- Campillo-Cora, Claudia, et al.
(författare)
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Assessment of Polluted Soil Remediation Using Bacterial Community Tolerance to Heavy Metals as an Indicator
- 2022
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Ingår i: agronomy. - : MDPI AG. - 2073-4395. ; 12:10
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Tidskriftsartikel (refereegranskat)abstract
- The assessment of remediation on metal-polluted soils is usually focused on total and/or bioavailable metal content. However, these chemical variables do not provide direct information about reductions in heavy metals pressure on soil microorganisms. We propose the use of bacterial communities to evaluate the efficiency of three remediation techniques: crushed mussel shell (CMS) and pine bark (PB) as soil amendments and EDTA-washing. A soil sample was polluted with different doses of Cu, Ni, and Zn (separately). After 30 days of incubation, the remediation techniques were applied, and bacterial community tolerance to heavy metals determined. If bacterial communities develop tolerance, it is an indicator that the metal is exerting toxicity on them. Soil bacterial communities developed tolerance to Cu, Ni, and Zn in response to metal additions. After remediation, bacterial communities showed decreases in bacterial community tolerance to Cu, Ni, and Zn for all remediation techniques. For Cu and Ni, soil EDTA-washing showed the greatest reduction of bacterial community tolerance to Cu and Ni, respectively, while for Zn the soil amendment with PB was the most effective remediation technique. Thus, bacterial community tolerance to heavy metals successfully detect differences in the effectiveness of the three remediation techniques.
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| 5. |
- Campillo-Cora, Claudia, et al.
(författare)
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Bacterial community tolerance to Cu in soils with geochemical baseline concentrations (GBCs) of heavy metals : Importance for pollution induced community tolerance (PICT) determinations using the leucine incorporation method
- 2021
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Ingår i: Soil Biology and Biochemistry. - : Elsevier BV. - 0038-0717. ; 155
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Tidskriftsartikel (refereegranskat)abstract
- PICT (Pollution Induced Community Tolerance) to Cu is a useful and sensitive tool to assess the effects of Cu pollution in soils under laboratory conditions. However, in field situations, the absence of reference values, i.e. bacterial community tolerance to Cu baseline from non-polluted soils, make the method uncertain when we want to know if a soil is or is not polluted from a microbiological point of view. In order to shed some light on this topic, the PICT (Pollution Induced Community Tolerance) concept was used to determine the bacterial community tolerance to Cu in uncontaminated soils developed on five different parent materials, using log IC50 as a tolerance index. IC50 was calculated as the amount of Cu that inhibit 50% of bacterial growth (estimated via the leucine incorporation method) in a bacterial suspension extracted from soil. With physico-chemical soil characteristics and type of parent material, a linear multiple regression equation was fitted explaining 80% of the variance in log IC50 values. This equation provides a useful tool to estimate the bacterial community tolerance to Cu baseline in a soil using the general soil characteristics, allowing for the more general use of PICT without the need of reference soils.
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| 6. |
- Campillo-Cora, Claudia, et al.
(författare)
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Estimation of baseline levels of bacterial community tolerance to Cr, Ni, Pb, and Zn in unpolluted soils, a background for PICT (pollution-induced community tolerance) determination
- 2022
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Ingår i: Biology and Fertility of Soils. - : Springer Science and Business Media LLC. - 0178-2762 .- 1432-0789. ; 58:1, s. 49-61
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Tidskriftsartikel (refereegranskat)abstract
- The PICT method (pollution-induced community tolerance) can be used to assess whether changes in soil microbial response are due to heavy metal toxicity or not. Microbial community tolerance baseline levels can, however, also change due to variations in soil physicochemical properties. Thirty soil samples (0–20 cm), with geochemical baseline concentrations (GBCs) of heavy metals and from five different parent materials (granite, limestone, schist, amphibolite, and serpentine), were used to estimate baseline levels of bacterial community tolerance to Cr, Ni, Pb, and Zn using the leucine incorporation method. General equations (n = 30) were determined by multiple linear regression using general soil properties and parent material as binary variables, explaining 38% of the variance in log IC50 (concentration that inhibits 50% of bacterial growth) values for Zn, with 36% for Pb, 44% for Cr, and 68% for Ni. The use of individual equations for each parent material increased the explained variance for all heavy metals, but the presence of a low number of samples (n = 6) lead to low robustness. Generally, clay content and dissolved organic C (DOC) were the main variables explaining bacterial community tolerance for the tested heavy metals. Our results suggest that these equations may permit applying the PICT method with Zn and Pb when there are no reference soils, while more data are needed before using this concept for Ni and Cr.
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| 7. |
- Fernandez-Calvino, David, et al.
(författare)
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Assessing the effects of Cu and pH on microorganisms in highly acidic vineyard soils
- 2012
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Ingår i: European Journal of Soil Science. - : Wiley. - 1365-2389 .- 1351-0754. ; 63:5, s. 571-578
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Tidskriftsartikel (refereegranskat)abstract
- Because of the use of agricultural land for wine production and the frequent use of copper (Cu)-based fungicides, Cu concentration has been increasing in soils in many parts of the world. In vineyards with acid parent materials, low soil pH may also encourage Cu toxicity, but it is common to use lime in order to increase the soil pH and improve crop yields. Thus, vineyard soils may have large variations in pH, which will affect the microbial communities, making it difficult to isolate possible toxic effects of Cu on soil microbes. Here, analyses of phospholipid fatty acid (PLFA) patterns and pollution-induced community tolerance (PICT, using leucine incorporation) were used to study the effect of Cu accumulation at small to medium concentrations in acid soils (pH 4.05.8) in vineyards with different land-use history (young, old and abandoned vineyards). The results suggested that soil pH played a dominant role in determining the composition of the microbial community of the soils. Only a small effect of soil Cu could be detected and the effect on microbial community composition was much less than the pH effect. PICT analysis suggested that bacterial communities in old vineyards were more tolerant of Cu than those in the abandoned vineyards. However, increased PICT (Cu tolerance of the bacterial community) was not directly correlated with Cu concentration in the soils. Instead, the estimated Cu tolerance was significantly correlated with soil pH.
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| 8. |
- Fernandez-Calvino, David, et al.
(författare)
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Bacterial pollution induced community tolerance (PICT) to Cu and interactions with pH in long-term polluted vineyard soils
- 2011
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Ingår i: Soil Biology & Biochemistry. - : Elsevier BV. - 0038-0717. ; 43:11, s. 2324-2331
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Tidskriftsartikel (refereegranskat)abstract
- Pollution induced community tolerance (PICT) has been suggested as an end-point measurement less affected by confounding environmental factors compared to standard methods of microbial growth, activity and community composition. We evaluated the use of PICT to determine Cu toxicity in vineyard soils polluted with Cu based fungicides (25-1120 mg Cu kg(-1)). These soils also varied in pH (4.3-7.3), organic C (0.31-6.91%) and texture (14-56% silt). PICT was estimated as bacterial community tolerance to Cu measured by the [H-3]leucine incorporation method. Bacterial tolerance to Cu increased 9 times in the most polluted compared to the unpolluted soils. Cu tolerance was also affected to a minor degree by pH, organic C and soil texture. Lower bacterial tolerance was found in soils with high pH and organic C, probably due to Cu becoming less bioavailable in soils with high pH and organic C content. The silt content appeared to increase bacterial tolerance, probably due to fine soil particles decreasing Cu bioavailability during the PICT detection phase. Despite the effects of other environmental factors, the main determinant of increased bacterial community tolerance to Cu was the pollution level. PICT measured with the leucine incorporation technique thus appears to be a sensitive and stable concept to evaluate toxic impacts, unless soils with very different pH, organic C or texture are studied. (C) 2011 Elsevier Ltd. All rights reserved.
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| 9. |
- Fernandez-Calvino, David, et al.
(författare)
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Co-selection for antibiotic tolerance in Cu-polluted soil is detected at higher Cu-concentrations than increased Cu-tolerance
- 2013
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Ingår i: Soil Biology & Biochemistry. - : Elsevier BV. - 0038-0717. ; 57, s. 953-956
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Tidskriftsartikel (refereegranskat)abstract
- Co-selection for antibiotic tolerance in Cu polluted soils was studied in a laboratory experiment. Pollution Induced Community Tolerance (PICT) of the bacterial community was estimated using leucine incorporation. PICT was found in Cu polluted soils to tetracycline (>= 8 mmol Cu kg(-1)), tylosin (>= 16 mmol Cu kg(-1)) and vancomycin (>= 16 mmol Cu kg(-1)). PICT to the antibiotics was found at higher Cu pollution levels than PICT to Cu (>= 2 mmol Cu kg(-1)), suggesting that legislative limits protecting for effects of Cu on soil bacteria would also protect from increasing antibiotic co-tolerance. (C) 2012 Elsevier Ltd. All rights reserved.
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| 10. |
- Fernández-Calviño, David, et al.
(författare)
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Ecotoxicological assessment of propiconazole using soil bacterial and fungal growth assays
- 2017
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Ingår i: Applied Soil Ecology. - : Elsevier BV. - 0929-1393. ; 115, s. 27-30
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Tidskriftsartikel (refereegranskat)abstract
- Effects of the fungicide propiconazole on soil microorganisms were tested using [3H] leucine incorporation and [14C] acetate in ergosterol incorporation to measure bacterial and fungal growth inhibition, respectively. Growth was compared to basal respiration (BR) and substrate-induced respiration (SIR) in soil microcosms established according to the OECD 217 guideline. Fungal growth was most sensitive with IC50 values remaining around 300 mg kg−1 during 40 days of incubation. SIR was initially less sensitive (IC50 1300 mg kg−1), but IC50 values progressively decreased over time to reach 380 mg kg−1 after 40 days. Bacterial growth was affected at concentrations ≥200 mg kg−1, but exhibited more complex dose-response relationships possibly due to a combination of direct toxicity, bacterial community adaptation, and competitive release from the more severely affected fungi. BR was either stimulated or not affected by propiconazole. Our results indicate that group-specific endpoints targeting microbial growth will improve ecotoxicological assessment of toxicants for environmental risk assessment.
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