| 1. |
- Aquila, Andrew, et al.
(författare)
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Time-resolved protein nanocrystallography using an X-ray free-electron laser
- 2012
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Ingår i: Optics Express. - 1094-4087. ; 20:3, s. 2706-2716
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Tidskriftsartikel (refereegranskat)abstract
- We demonstrate the use of an X-ray free electron laser synchronized with an optical pump laser to obtain X-ray diffraction snapshots from the photoactivated states of large membrane protein complexes in the form of nanocrystals flowing in a liquid jet. Light-induced changes of Photosystem I-Ferredoxin co-crystals were observed at time delays of 5 to 10 µs after excitation. The result correlates with the microsecond kinetics of electron transfer from Photosystem I to ferredoxin. The undocking process that follows the electron transfer leads to large rearrangements in the crystals that will terminally lead to the disintegration of the crystals. We describe the experimental setup and obtain the first time-resolved femtosecond serial X-ray crystallography results from an irreversible photo-chemical reaction at the Linac Coherent Light Source. This technique opens the door to time-resolved structural studies of reaction dynamics in biological systems.
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| 2. |
- Artiaco, Claudia, et al.
(författare)
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Efficient Large-Scale Many-Body Quantum Dynamics via Local-Information Time Evolution
- 2024
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Ingår i: PRX Quantum. - : American Physical Society (APS). - 2691-3399. ; 5:2
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Tidskriftsartikel (refereegranskat)abstract
- During time evolution of many-body systems entanglement grows rapidly, limiting exact simulations to small-scale systems or small timescales. Quantum information tends, however, to flow towards larger scales without returning to local scales, such that its detailed large-scale structure does not directly affect local observables. This allows for the removal of large-scale quantum information in a way that preserves all local observables and gives access to large-scale and large-time quantum dynamics. To this end, we use the recently introduced information lattice to organize quantum information into different scales, allowing us to define local information and information currents that we employ to systematically discard long-range quantum correlations in a controlled way. Our approach relies on decomposing the system into subsystems up to a maximum scale and time evolving the subsystem density matrices by solving the subsystem von Neumann equations in parallel. Importantly, the information flow needs to be preserved during the discarding of large-scale information. To achieve this without the need to make assumptions about the microscopic details of the information current, we introduce a second scale at which information is discarded, while using the state at the maximum scale to accurately obtain the information flow. The resulting algorithm, which we call local-information time evolution, is highly versatile and suitable for investigating many-body quantum dynamics in both closed and open quantum systems with diverse hydrodynamic behaviors. We present results for the energy transport in the mixed-field Ising model and the magnetization transport in the XX spin chain with onsite dephasing where we accurately determine the power-law exponent and the diffusion coefficients. Furthermore, the information lattice framework employed here promises to offer insightful results about the spatial and temporal behavior of entanglement in many-body systems.
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| 3. |
- Beatrez, William, et al.
(författare)
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Critical prethermal discrete time crystal created by two-frequency driving
- 2023
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Ingår i: Nature Physics. - : Springer Nature. - 1745-2473 .- 1745-2481. ; 19:3, s. 407-413
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Tidskriftsartikel (refereegranskat)abstract
- Discrete time crystals are non-equilibrium many-body phases of matter characterized by spontaneously broken discrete time-translation symmetry under periodic driving. At sufficiently high driving frequencies, the system enters the Floquet prethermalization regime, in which the periodically driven many-body state has a lifetime vastly exceeding the intrinsic decay time of the system. Here, we report the observation of long-lived prethermal discrete time-crystalline order in a three-dimensional (3D) lattice of 13C nuclei in diamond at room temperature. We demonstrate a two-frequency driving protocol, involving an interleaved application of slow and fast drives that simultaneously prethermalize the spins with an emergent quasi-conserved magnetization along the x̂ axis. This enables continuous and highly resolved observation of their dynamic evolution. We obtain videos of the time-crystalline response with a clarity and throughput orders of magnitude greater than previous experiments. Parametric control over the drive frequencies allows us to reach time-crystal lifetimes of up to 396 Floquet cycles, which we measure in a single-shot experiment. Such rapid measurement enables detailed characterization of the entire phase diagram, highlighting the role of prethermalization in stabilizing the time-crystal response. The two-frequency drive approach expands the toolkit for investigating non-equilibrium phases of matter stabilized by emergent quasi-conservation laws.
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| 4. |
- Ekeberg, Tomas, et al.
(författare)
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Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser
- 2016
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Ingår i: Scientific Data. - : Springer Science and Business Media LLC. - 2052-4463. ; 3
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Tidskriftsartikel (refereegranskat)abstract
- Free-electron lasers (FEL) hold the potential to revolutionize structural biology by producing X-ray pules short enough to outrun radiation damage, thus allowing imaging of biological samples without the limitation from radiation damage. Thus, a major part of the scientific case for the first FELs was three-dimensional (3D) reconstruction of non-crystalline biological objects. In a recent publication we demonstrated the first 3D reconstruction of a biological object from an X-ray FEL using this technique. The sample was the giant Mimivirus, which is one of the largest known viruses with a diameter of 450 nm. Here we present the dataset used for this successful reconstruction. Data-analysis methods for single-particle imaging at FELs are undergoing heavy development but data collection relies on very limited time available through a highly competitive proposal process. This dataset provides experimental data to the entire community and could boost algorithm development and provide a benchmark dataset for new algorithms.
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| 5. |
- Ekeberg, Tomas, 1983-, et al.
(författare)
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Three-dimensional structure determination with an X-ray laser
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- Three-dimensional structure determination of a non-crystalline virus has been achieved from a set of randomly oriented continuous diffraction patterns captured with an X-ray laser. Intense, ultra-short X-ray pulses intercepted a beam of single mimivirus particles, producing single particle X-ray diffraction patterns that are assembled into a three-dimensional amplitude distribution based on statistical consistency. Phases are directly retrieved from the assembled Fourier distribution to synthesize a three-dimensional image. The resulting electron density reveals a pseudo-icosahedral asymmetric virion structure with a compartmentalized interior, within which the DNA genome occupies only about a fifth of the volume enclosed by the capsid. Additional electron microscopy data indicate the genome has a chromatin-like fiber structure that has not previously been observed in a virus.
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| 6. |
- Fleckenstein, Christoph, et al.
(författare)
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Formation and detection of Majorana modes in quantum spin Hall trenches
- 2021
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Ingår i: Physical Review B. - : American Physical Society (APS). - 2469-9950 .- 2469-9969. ; 103:12
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Tidskriftsartikel (refereegranskat)abstract
- We propose a novel realization for a topologically superconducting phase hosting Majorana zero modes on the basis of quantum spin Hall systems. Remarkably, our proposal is completely free of ferromagnets. Instead, we confine helical edge states around a narrow defect line of finite length in a two-dimensional topological insulator. We demonstrate the formation of a new topological regime, hosting protected Majorana modes in the presence of s-wave superconductivity and Zeeman coupling. Interestingly, when the system is weakly tunnel coupled to helical edge state reservoirs, a particular transport signature is associated with the presence of a non-Abelian Majorana zero mode.
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| 7. |
- Fleckenstein, Christoph, et al.
(författare)
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Non-Hermitian topology in monitored quantum circuits
- 2022
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Ingår i: Physical Review Research. - : American Physical Society (APS). - 2643-1564. ; 4:3
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Tidskriftsartikel (refereegranskat)abstract
- We demonstrate that genuinely non-Hermitian topological phases and corresponding topological phase transitions can be naturally realized in monitored quantum circuits, exemplified by the paradigmatic non-Hermitian Su-Schrieffer-Heeger model. We emulate this model by a 1D chain of spinless electrons evolving under unitary dynamics and subject to periodic measurements that are stochastically invoked. The non-Hermitian topology is visible in topological invariants adapted to the context of monitored circuits. For instance, the topological phase diagram of the monitored realization of the non-Hermitian Su-Schrieffer-Heeger model is obtained from the biorthogonal polarization computed from an effective Hamiltonian of the monitored system. Importantly, our monitored circuit realization allows direct access to steady-state biorthogonal expectation values of generic observables, and hence, to measure physical properties of a genuine non-Hermitian model. We expect our results to be applicable more generally to a wide range of models that host non-Hermitian topological phases.
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| 8. |
- Fleckenstein, Christoph, et al.
(författare)
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Prethermalization and thermalization in periodically driven many-body systems away from the high-frequency limit
- 2021
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Ingår i: Physical Review B. - : American Physical Society (APS). - 2469-9950 .- 2469-9969. ; 103:14
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Tidskriftsartikel (refereegranskat)abstract
- We investigate a class of periodically driven many-body systems that allows us to extend the phenomenon of prethermalization to the vicinity of isolated intermediate-to-low drive frequencies away from the high-frequency limit. We provide numerical evidence for the formation of a parametrically long-lived prethermal plateau, captured by an effective Floquet Hamiltonian computed using the replica inverse-frequency expansion, and demonstrate its stability with respect to random perturbations in the drive period. Considering exclusively nonintegrable Floquet Hamiltonians, we find that heating rates are nonuniversal: we observe Fermi's golden rule scaling, power-law scaling inconsistent with the golden rule, and non-power-law scaling, depending on the drive. Despite the asymptotic character of the inverse-frequency expansion, we show that it describes the thermostatic properties of the state all along the evolution up to infinite temperature, with higher-order terms improving the accuracy. Our results suggest a dynamical mechanism to gradually increase the temperature in isolated quantum simulators, such as ultracold atoms, and open up an alternative possibility to investigate thermal phase transitions and the interplay between thermal and quantum criticality using Floquet drives.
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| 9. |
- Fleckenstein, Christoph, et al.
(författare)
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Thermalization and prethermalization in periodically kicked quantum spin chains
- 2021
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Ingår i: Physical Review B. - : American Physical Society (APS). - 2469-9950 .- 2469-9969. ; 103:14
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Tidskriftsartikel (refereegranskat)abstract
- We study the dynamics of periodically kicked many-body systems away from the high-frequency regime, and discuss a family of Floquet systems where the notion of prethermalization can be naturally extended to intermediate and low driving frequencies. We investigate numerically the dynamics of both integrable and nonintegrable systems, and report on the formation of a long-lived prethermal plateau, akin to the high-frequency limit, where the system thermalizes with respect to an effective Hamiltonian captured by the inverse-frequency expansion (IFE). Unlike the high-frequency regime, we find that the relevant heating times are model dependent: we analyze the stability of the prethermal plateau to small perturbations in the drive period and show that, in a spin chain whose IFE is intractable, the plateau duration is insensitive to the perturbation strength, in contrast to a chain where the IFE admits the resummation of an entire subseries. Infinitesimal perturbations are enough to restore the ergodic properties of the system, and decrease residual finite-size effects. Although the regime where the Floquet system leaves the prethermal plateau and starts heating up to infinite temperature is not captured by the IFE, we provide evidence that the evolved subsystem is described well by a thermal state with respect to the IFE Hamiltonian, with a gradually changing temperature, in accord with the eigenstate thermalization hypothesis.
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| 10. |
- Johansson, Linda C, 1983, et al.
(författare)
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Lipidic phase membrane protein serial femtosecond crystallography.
- 2012
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Ingår i: Nature methods. - : Springer Science and Business Media LLC. - 1548-7105 .- 1548-7091. ; 9:3, s. 263-265
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Tidskriftsartikel (refereegranskat)abstract
- X-ray free electron laser (X-FEL)-based serial femtosecond crystallography is an emerging method with potential to rapidly advance the challenging field of membrane protein structural biology. Here we recorded interpretable diffraction data from micrometer-sized lipidic sponge phase crystals of the Blastochloris viridis photosynthetic reaction center delivered into an X-FEL beam using a sponge phase micro-jet.
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