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- Niemi, MEK, et al.
(författare)
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- 2021
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swepub:Mat__t
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- Gehlen, J., et al.
(författare)
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First genome-wide association study of esophageal atresia identifies three genetic risk loci at CTNNA3, FOXF1/FOXC2/FOXL1, and HNF1B
- 2022
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Ingår i: Human Genetics and Genomics Advances. - : Elsevier BV. - 2666-2477. ; 3:2
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Tidskriftsartikel (refereegranskat)abstract
- Esophageal atresia with or without tracheoesophageal fistula (EA/TEF) is the most common congenital malformation of the upper digestive tract. This study represents the first genome-wide association study (GWAS) to identify risk loci for EA/TEF. We used a European case-control sample comprising 764 EA/TEF patients and 5,778 controls and observed genome-wide significant associations at three loci. On chromosome 10q21 within the gene CTNNA3 (p = 2.11 × 10−8; odds ratio [OR] = 3.94; 95% confidence interval [CI], 3.10–5.00), on chromosome 16q24 next to the FOX gene cluster (p = 2.25 × 10−10; OR = 1.47; 95% CI, 1.38–1.55) and on chromosome 17q12 next to the gene HNF1B (p = 3.35 × 10−16; OR = 1.75; 95% CI, 1.64–1.87). We next carried out an esophageal/tracheal transcriptome profiling in rat embryos at four selected embryonic time points. Based on these data and on already published data, the implicated genes at all three GWAS loci are promising candidates for EA/TEF development. We also analyzed the genetic EA/TEF architecture beyond the single marker level, which revealed an estimated single-nucleotide polymorphism (SNP)-based heritability of around 37% ± 14% standard deviation. In addition, we examined the polygenicity of EA/TEF and found that EA/TEF is less polygenic than other complex genetic diseases. In conclusion, the results of our study contribute to a better understanding on the underlying genetic architecture of ET/TEF with the identification of three risk loci and candidate genes. © 2022 The Authors
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| 7. |
- Claesson, PM, et al.
(författare)
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Interactions between a 30% charged polyelectrolyte and an anionic surfactant in bulk and at a solid-liquid interface
- 1998
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Ingår i: Journal of Physical Chemistry B. - 1520-6106 .- 1520-5207. ; 102, s. 1270-1278
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Tidskriftsartikel (refereegranskat)abstract
- The association between a 30% charged cationic polyelectrolyte and an anionic surfactant, sodium dodecyl sulfate (SDS), in 10 mM 1:1 electrolyte was investigated using surface force measurements and dynamic light scattering. The polyelectrolyte employed was a random copolymer of the neutral acrylamide and cationic [3-(2-methylpropionamide)propyl]trimethylammonium chloride (AM-MAPTAC-31). Light scattering measurements show that upon progressive addition of SDS to an AM-MAPTAC-31 solution the single coil size decreases until precipitation occurs at an SDS/MAPTAC ratio of just above 0.4. At SDS/MAPTAC ratios at or above 2, redispersion of the aggregates takes place. The interfacial behavior of AM-MAPTAC-31/SDS complexes was investigated in two ways. In one set of experiments a droplet containing a mixture of SDS and AM-MAPTAC-31 was placed between the surfaces and adsorption was allowed to occur from the aqueous mixture. It was found that the range of the steric force decreased when the SDS/MAPTAC ratio was increased from 0 to 0.4, indicating adsorption in a less extended conformation due to a decreased repulsion between the polyelectrolyte segments. At a ratio of 0.6 a compact interfacial complex was formed and the measured force was attractive over a small distance regime. A further increase in SDS/MAPTAC ratio resulted in precipitation of large aggregates at the surface, and reproducible force data could not be obtained. At an even higher SDS/AM-MAPTAC ratio of 4, individual aggregates were once again adsorbed at the surface. Hence, we find a good correspondence between association in bulk and at the solid surface. In another set of experiments the polyelectrolyte was first preadsorbed to mica surfaces and then SDS was added to the polyelectrolyte-free solution surrounding the surfaces. In this way precipitation of large SDS-polyelectrolyte aggregates onto the surfaces was avoided. Addition of SDS up to a concentration of 0.1 mM hardly affected the long-range interaction but gave an increased compressed layer thickness. A further increase in SDS concentrations to 1 mM results in a dramatic increase in the range of the force, suggesting formation of strongly negatively charged polyelectrolyte-surfactant complexes.
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