| 1. |
- Hess, Timo, et al.
(author)
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Dissecting the genetic heterogeneity of gastric cancer
- 2023
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In: EBioMedicine. - : Elsevier. - 2352-3964. ; 92
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Journal article (peer-reviewed)abstract
- Background: Gastric cancer (GC) is clinically heterogenous according to location (cardia/non-cardia) and histopathology (diffuse/intestinal). We aimed to characterize the genetic risk architecture of GC according to its subtypes. Another aim was to examine whether cardia GC and oesophageal adenocarcinoma (OAC) and its precursor lesion Barrett's oesophagus (BO), which are all located at the gastro-oesophageal junction (GOJ), share polygenic risk architecture.Methods: We did a meta-analysis of ten European genome-wide association studies (GWAS) of GC and its subtypes. All patients had a histopathologically confirmed diagnosis of gastric adenocarcinoma. For the identification of risk genes among GWAS loci we did a transcriptome-wide association study (TWAS) and expression quantitative trait locus (eQTL) study from gastric corpus and antrum mucosa. To test whether cardia GC and OAC/BO share genetic aetiology we also used a European GWAS sample with OAC/BO.Findings: Our GWAS consisting of 5816 patients and 10,999 controls highlights the genetic heterogeneity of GC according to its subtypes. We newly identified two and replicated five GC risk loci, all of them with subtype-specific association. The gastric transcriptome data consisting of 361 corpus and 342 antrum mucosa samples revealed that an upregulated expression of MUC1, ANKRD50, PTGER4, and PSCA are plausible GC-pathomechanisms at four GWAS loci. At another risk locus, we found that the blood-group 0 exerts protective effects for non-cardia and diffuse GC, while blood-group A increases risk for both GC subtypes. Furthermore, our GWAS on cardia GC and OAC/BO (10,279 patients, 16,527 controls) showed that both cancer entities share genetic aetiology at the polygenic level and identified two new risk loci on the single-marker level.Interpretation: Our findings show that the pathophysiology of GC is genetically heterogenous according to location and histopathology. Moreover, our findings point to common molecular mechanisms underlying cardia GC and OAC/BO.
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| 2. |
- Rodriguez, Sébastien, et al.
(author)
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Science goals and new mission concepts for future exploration of Titan's atmosphere, geology and habitability : titan POlar scout/orbitEr and in situ lake lander and DrONe explorer (POSEIDON)
- 2022
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In: Experimental astronomy. - : Springer Science and Business Media LLC. - 0922-6435 .- 1572-9508. ; 54:2-3, s. 911-973
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Journal article (peer-reviewed)abstract
- In response to ESA’s “Voyage 2050” announcement of opportunity, we propose an ambitious L-class mission to explore one of the most exciting bodies in the Solar System, Saturn’s largest moon Titan. Titan, a “world with two oceans”, is an organic-rich body with interior-surface-atmosphere interactions that are comparable in complexity to the Earth. Titan is also one of the few places in the Solar System with habitability potential. Titan’s remarkable nature was only partly revealed by the Cassini-Huygens mission and still holds mysteries requiring a complete exploration using a variety of vehicles and instruments. The proposed mission concept POSEIDON (Titan POlar Scout/orbitEr and In situ lake lander DrONe explorer) would perform joint orbital and in situ investigations of Titan. It is designed to build on and exceed the scope and scientific/technological accomplishments of Cassini-Huygens, exploring Titan in ways that were not previously possible, in particular through full close-up and in situ coverage over long periods of time. In the proposed mission architecture, POSEIDON consists of two major elements: a spacecraft with a large set of instruments that would orbit Titan, preferably in a low-eccentricity polar orbit, and a suite of in situ investigation components, i.e. a lake lander, a “heavy” drone (possibly amphibious) and/or a fleet of mini-drones, dedicated to the exploration of the polar regions. The ideal arrival time at Titan would be slightly before the next northern Spring equinox (2039), as equinoxes are the most active periods to monitor still largely unknown atmospheric and surface seasonal changes. The exploration of Titan’s northern latitudes with an orbiter and in situ element(s) would be highly complementary in terms of timing (with possible mission timing overlap), locations, and science goals with the upcoming NASA New Frontiers Dragonfly mission that will provide in situ exploration of Titan’s equatorial regions, in the mid-2030s.
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| 3. |
- Dunér, David, et al.
(author)
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Education, Training and Scholarship
- 2018
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In: Astrobiology and Society in Europe Today. - Cham : Springer International Publishing. - 9783319962641 ; , s. 31-35
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Book chapter (peer-reviewed)
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| 4. |
- Gatchell, Michael, et al.
(author)
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Commissioning of the DESIREE storage rings - a new facility for cold ion-ion collisions
- 2014
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In: XXVIII International Conference on Photonic, Electronic and Atomic Collisions (ICPEAC 2013). - : Institute of Physics (IOP). ; 488:1
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Conference paper (peer-reviewed)abstract
- We report on the ongoing commissioning of the Double ElectroStatic Ion Ring ExpEriment, DESIREE, at Stockholm University. Beams of atomic carbon anions (C-) and smaller carbon anion molecules (C-2(-), C-3(-), C-4(-) etc.) have been produced in a sputter ion source, accelerated to 10 keV or 20 keV, and stored successfully in the two electrostatic rings. The rings are enclosed in a common vacuum chamber cooled to below 13 Kelvin. The DESIREE facility allows for studies of internally relaxed single isolated atomic, molecular and cluster ions and for collision experiments between cat-and anions down to very low center-of-mass collision energies (meV scale). The total thermal load of the vacuum chamber at this temperature is measured to be 32 W. The decay rates of stored ion beams have two components: a non-exponential component caused by the space charge of the beam itself which dominates at early times and an exponential term from the neutralization of the beam in collisions with residual gas at later times. The residual gas limited storage lifetime of carbon anions in the symmetric ring is over seven minutes while the 1/e lifetime in the asymmetric ring is measured to be about 30 seconds. Although we aim to improve the storage in the second ring, the number of stored ions are now sufficient for many merged beams experiments with positive and negative ions requiring milliseconds to seconds ion storage.
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| 5. |
- Gatchell, Michael, et al.
(author)
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First results from the Double ElectroStatic Ion-Ring ExpEriment, DESIREE
- 2014
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In: XXVIII International Conference on Photonic, Electronic and Atomic Collisions (ICPEAC 2013). - : Institute of Physics (IOP). ; 488
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Conference paper (peer-reviewed)abstract
- We have stored the first beams in one of the rings of the double electrostatic ion-storage ring, DESIREE at cryogenic and at room temperature conditions. At cryogenic operations the following parameters are found. Temperature; T= 13K, pressure; p <10(-13) mbar, initial number of stored ions; N > 10(7) and storage lifetime of a C-2(-) beam; tau = 450 S.
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| 6. |
- Hartman, Henrik, et al.
(author)
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First storage of ion beams in the Double Electrostatic Ion-Ring Experiment : DESIREE
- 2013
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In: Review of Scientific Instruments. - : American Institute of Physics (AIP). - 0034-6748 .- 1089-7623. ; 84:5
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Journal article (peer-reviewed)abstract
- We report on the first storage of ion beams in the Double ElectroStatic Ion Ring ExpEriment, DESIREE, at Stockholm University. We have produced beams of atomic carbon anions and small carbon anion molecules (Cn-, n = 1, 2, 3, 4) in a sputter ion source. The ion beams were accelerated to 10 keV kinetic energy and stored in an electrostatic ion storage ring enclosed in a vacuum chamber at 13 K. For 10 keV C2- molecular anions we measure the residual-gas limited beam storage lifetime to be 448 s +/- 18 s with two independent detector systems. Using the measured storage lifetimes we estimate that the residual gas pressure is in the 10-14 mbar range. When high current ion beams are injected, the number of stored particles does not follow a single exponential decay law as would be expected for stored particles lost solely due to electron detachment in collision with the residual-gas. Instead, we observe a faster initial decay rate, which we ascribe to the effect of the space charge of the ion beam on the storage capacity.
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| 7. |
- Olofsson, Henrik, 1972, et al.
(author)
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A spectral line survey of Orion KL in the bands 486-492 and 541-577 GHz with the Odin satellite. I. The observational data
- 2007
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In: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 476:number 2, December III, s. 791-806
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Journal article (peer-reviewed)abstract
- Aims.Spectral line surveys are useful since they allow identification of new molecules and new lines in uniformly calibrated data sets. The subsequent multi-transition analysis will provide improved knowledge of molecular abundances, cloud temperatures and densities, and may also reveal previously unsuspected blends of molecular lines, which otherwise may lead to erroneous conclusions. Nonetheless, large portions of the sub-millimetre spectral regime remain unexplored due to severe absorptions by H2O and O2 in the terrestrial atmosphere. The purpose of the measurements presented here is to cover wavelength regions at and around 0.55 mm - regions largely unobservable from the ground.Methods.Using the Odin astronomy/aeronomy satellite, we performed the first spectral survey of the Orion KL molecular cloud core in the bands 486-492 and 541-576 GHz with rather uniform sensitivity (22-25 mK baseline noise). Odin's 1.1 m size telescope, equipped with four cryo-cooled tuneable mixers connected to broad band spectrometers, was used in a satellite position-switching mode. Two mixers simultaneously observed different 1.1 GHz bands using frequency steps of 0.5 GHz (25 h each). An on-source integration time of 20 h was achieved for most bands. The entire campaign consumed ~1100 orbits, each containing one hour of serviceable astro-observation.Results.We identified 280 spectral lines from 38 known interstellar molecules (including isotopologues) having intensities in the range 80 to 0.05 K. An additional 64 weak lines remain unidentified. Apart from the ground state rotational 11,0-10,1 transitions of ortho-H2O, H218O and H217O, the high energy 62,4-71,7 line of para-H2O (Eu=867$\,$K) and the HDO(20,2-11,1) line have been observed, as well as the 10-01 lines from NH3 and its rare isotopologue 15NH3. We suggest assignments for some unidentified features, notably the new interstellar molecules ND and SH-. Severe blends have been detected in the line wings of the H218O, H217O and 13CO lines changing the true linewidths of the outflow emission.
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| 8. |
- Persson, Carina, 1964, et al.
(author)
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A spectral line survey of Orion KL in the bands 486-492 and 541-577 GHz with the Odin satellite. II. Data analysis
- 2007
-
In: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 476:2, December III, s. 807-827
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Journal article (peer-reviewed)abstract
- Aims.We investigate the physical and chemical conditions in a typical star forming region, including an unbiased search for new molecules in a spectral region previously unobserved.Methods.Due to its proximity, the Orion KL region offers a unique laboratory of molecular astrophysics in a chemically rich, massive star forming region. Several ground-based spectral line surveys have been made, but due to the absorption by water and oxygen, the terrestrial atmosphere is completely opaque at frequencies around 487 and 557 GHz. To cover these frequencies we used the Odin satellite to perform a spectral line survey in the frequency ranges 486-492 GHz and 541-577 GHz, filling the gaps between previous spectral scans. Odin's high main beam efficiency, $\eta_{{\rm mb}}$ = 0.9, and observations performed outside the atmosphere make our intensity scale very well determined.Results.We observed 280 spectral lines from 38 molecules including isotopologues, and, in addition, 64 unidentified lines. A few U-lines have interesting frequency coincidences such as ND and the anion SH-. The beam-averaged emission is dominated by CO, H2O, SO2, SO, 13CO and CH3OH. Species with the largest number of lines are CH3OH, (CH3)2O, SO2, 13CH3OH, CH3CN and NO. Six water lines are detected including the ground state rotational transition 11,0-10,1 of o-H2O, its isotopologues o-H218O and o-H217O, the Hot Core tracing p-H2O transition 62,4-71,7, and the 20, 2-11,1 transition of HDO. Other lines of special interest are the 10-0$_$ transition of NH3 and its isotopologue 15NH3. Isotopologue abundance ratios of D/H, 12C/13C, 32S/34S, 34S/33S, and 18O/17O are estimated. The temperatures, column densities and abundances in the various subregions are estimated, and we find very high gas-phase abundances of H2O, NH3, SO2, SO, NO, and CH3OH. A comparison with the ice inventory of ISO sheds new light on the origin of the abundant gas-phase molecules.
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| 9. |
- Thomas, Richard D., et al.
(author)
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DESIREE : Physics with cold stored ion beams
- 2015
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In: DR2013. - : EDP Sciences. ; 84, s. 01004-01004
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Conference paper (peer-reviewed)abstract
- Here we will briefly describe the commissioning of the Double ElectroStatic Ion Ring ExpEriment (DESIREE) facility at Stockholm University, Sweden. This device uses purely electrostatic focussing and deflection elements and allows ion beams of opposite charge to be confined under extreme high vacuum and cryogenic conditions in separate rings and then merged over a common straight section. This apparatus allows for studies of interactions between cations and anions at very low and well-defined centre-of-mass energies (down to a few meV) and at very low internal temperatures (down to a few K).
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| 10. |
- Tom, Brian A., et al.
(author)
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Dissociative recombination of highly enriched para-H-3(+)
- 2009
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In: Journal of Chemical Physics. - : AIP Publishing. - 0021-9606 .- 1089-7690. ; 130:3, s. 31101-
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Journal article (peer-reviewed)abstract
- The determination of the dissociative recombination rate coefficient of H-3(+) has had a turbulent history, but both experiment and theory have recently converged to a common value. Despite this convergence, it has not been clear if there should be a difference between the rate coefficients for ortho-H-3(+) and para-H-3(+). A difference has been predicted theoretically and could conceivably impact the ortho:para ratio of H-3(+) in the diffuse interstellar medium, where H-3(+) has been widely observed. We present the results of an experiment at the CRYRING ion storage ring in which we investigated the dissociative recombination of highly enriched (similar to 83.6%) para-H-3(+) using a supersonic expansion source that produced ions with T-rot similar to 60-100 K. We observed an increase in the low energy recombination rate coefficient of the enriched para-H-3(+) by a factor of similar to 1.25 in comparison to H-3(+) produced from normal H-2 (ortho:para=3:1). The ratio of the rate coefficients of pure para-H-3(+) to that of pure ortho-H-3(+) is inferred to be similar to 2 at low collision energies; the corresponding ratio of the thermal rate coefficients is similar to 1.5 at electron temperatures from 60 to 1000 K. We conclude that this difference is unlikely to have an impact on the interstellar ortho:para ratio of H-3(+).
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