| 1. |
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| 2. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 3. |
- Bhat, Bratati, et al.
(författare)
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Chemical Evolution of Some Selected Complex Organic Molecules in Low-mass Star-forming Regions
- 2023
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Ingår i: Astrophysical Journal. - 1538-4357 .- 0004-637X. ; 958:2
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Tidskriftsartikel (refereegranskat)abstract
- The destiny of complex organic molecules (COMs) in star-forming regions is interlinked with various evolutionary phases. Therefore, identifying these species in diversified environments of identical star-forming regions would help to understand their physical and chemical heritage. We identified multiple COMs utilizing the Large Program Astrochemical Surveys At Institut de Radio Astronomie Millimétrique (IRAM) data, dedicated to chemical surveys in Sun-like star-forming regions with the IRAM 30 m telescope. It was an unbiased survey in the millimeter regime, covering the prestellar core, protostar, outflow region, and protoplanetary disk phase. Here, we report the transitions of seven COMs, namely, methanol (CH3OH), acetaldehyde (CH3CHO), methyl formate (CH3OCHO), ethanol (C2H5OH), propynal (HCCCHO), dimethyl ether (CH3OCH3), and methyl cyanide (CH3CN) in sources L1544, B1-b, IRAS4A, and SVS13A. We found a trend among these species from the derived abundances using the rotational diagram method and Monte Carlo Markov chain fitting. We have found that the abundances of all of the COMs, except for HCCCHO, increase from the L1544 (prestellar core) and peaks at IRAS16293-2422 (class 0 phase). It is noticed that the abundance of these molecules correlates with the luminosity of the sources. The obtained trend is also visible from the previous interferometric observations and considering the beam dilution effect.
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| 4. |
- Das, Ankan, et al.
(författare)
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Effect of Binding Energies on the Encounter Desorption
- 2021
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Ingår i: Frontiers in Astronomy and Space Sciences. - : Frontiers Media SA. - 2296-987X. ; 8
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Tidskriftsartikel (refereegranskat)abstract
- The abundance of interstellar ice constituents is usually expressed with respect to the water ice because, in denser regions, a significant portion of the interstellar grain surface would be covered by water ice. The binding energy (BE) or adsorption energy of the interstellar species regulates the chemical complexity of the interstellar grain mantle. Due to the high abundance of water ice, the BE of surface species with the water is usually provided and widely used in astrochemical modeling. However, the hydrogen molecules would cover some part of the grain mantle in the denser and colder part of the interstellar medium. Even at around similar to 10 K, few atoms and simple molecules with lower adsorption energies can migrate through the surface. The BE of the surface species with H-2 substrate would be very different from that of a water substrate. However, adequate information regarding these differences is lacking. Here, we employ the quantum chemical calculation to provide the BE of 95 interstellar species with H-2 substrate. These are representative of the BEs of species to a H-2 overlayer on a grain surface. On average, we notice that the BE with the H-2 monomer substrate is almost ten times lower than the BE of these species reported earlier with the H2O c-tetramer configuration. The encounter desorption of H and H-2 was introduced [with E-D (H, H-2) = 45 K and E-D (H-2, H-2) = 23 K] to have a realistic estimation of the abundances of the surface species in the colder and denser region. Our quantum chemical calculations yield higher adsorption energy of H-2 than that of H [E-D (H, H-2) = 23-25 K and E-D (H-2, H-2) = 67-79 K]. We further implement an astrochemical model to study the effect of encounter desorption with the present realistic estimation. The encounter desorption of the N atom [calculations yield E-D (N, H-2) = 83 K] is introduced to study the differences with its inclusion.
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| 5. |
- Edgecock, T. R., et al.
(författare)
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High intensity neutrino oscillation facilities in Europe
- 2013
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Ingår i: Physical Review Special Topics - Accelerators and Beams. - : American Physical Society. - 1098-4402. ; 16:2, s. 021002-
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Tidskriftsartikel (refereegranskat)abstract
- The EUROnu project has studied three possible options for future, high intensity neutrino oscillation facilities in Europe. The first is a Super Beam, in which the neutrinos come from the decay of pions created by bombarding targets with a 4 MW proton beam from the CERN High Power Superconducting Proton Linac. The far detector for this facility is the 500 kt MEMPHYS water Cherenkov, located in the Frejus tunnel. The second facility is the Neutrino Factory, in which the neutrinos come from the decay of mu(+) and mu(-) beams in a storage ring. The far detector in this case is a 100 kt magnetized iron neutrino detector at a baseline of 2000 km. The third option is a Beta Beam, in which the neutrinos come from the decay of beta emitting isotopes, in particular He-6 and Ne-18, also stored in a ring. The far detector is also the MEMPHYS detector in the Frejus tunnel. EUROnu has undertaken conceptual designs of these facilities and studied the performance of the detectors. Based on this, it has determined the physics reach of each facility, in particular for the measurement of CP violation in the lepton sector, and estimated the cost of construction. These have demonstrated that the best facility to build is the Neutrino Factory. However, if a powerful proton driver is constructed for another purpose or if the MEMPHYS detector is built for astroparticle physics, the Super Beam also becomes very attractive.
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| 6. |
- Ghosh, Rana, et al.
(författare)
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Phenol in High-mass Star-forming Regions
- 2022
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Ingår i: Research in Astronomy and Astrophysics. - : IOP Publishing. - 1674-4527. ; 22:6
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Tidskriftsartikel (refereegranskat)abstract
- Phenol, which belongs to the C6H6O isomeric group, is the simplest molecule in the family of alcohol of the aromatic series. Although phenol has yet to be detected in the interstellar medium, a tentative identification was reported toward the Orion KL hot core using the IRAM-30 m line survey. To explore some more species of this isomeric group, we consider ten species to study the fate of their astronomical detection. It is noticed that phenol is the most energetically favorable isomer of this group. In contrast, propargyl ether is the least favorable (having relative energy similar to 103 kcal mol(-1) compared to phenol) species of this group. So far, the studies associated with the formation of phenol are heavily concentrated on combustion chemistry. Here, we suggest a few key reactions (C6H6 + OH -> C6H5 + H2O, C6H6 + O -> C6H5OH, C6H6 + H -> C6H5 + H-2, and C6H5 + OH -> C6H5OH + h nu) for the formation of phenol. All these pathways are included in a large gas-grain chemical network to study its formation in high mass star-forming regions and dark cloud environments. It is noticed that the phenyl (-C6H5) formation by the ice-phase hydrogen abstraction reaction of benzene (i.e., C6H6 + OH -> C6H5 + H2O if allowed at similar to 10 K) could serve as the starting point for the formation of phenol in the gas phase by radiative association reaction C6H5 + OH -> C6H5OH + h nu. The gas-phase reaction C6H6 + O -> C6H5OH significantly contributes to the formation of phenol, when the ice-phase reaction C6H6 + OH -> C6H5 + H2O is not considered at low temperature. Band 4 ALMA archival data of a hot molecular core, G10.47+0.03, are analyzed. It yields an upper limit on phenol abundance of 5.19 x 10(-9). Our astrochemical model delivers an upper limit on phenol abundance of similar to 2.20 x 10(-9) in the hot molecular core, whereas its production in the dark cloud is not satisfactory.
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| 7. |
- Ghosh, Shishir, et al.
(författare)
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Reactivity of the triruthenium ortho-metalated cluster [Ru-3(CO)(9){mu(3)- eta(1), kappa(1),kappa(2)-PhP( C6H4) CH2PPh}] with tri(2-thienyl) phosphine and tri( 2-furyl) phosphine: Formation of 1,3-diphenyl-2,3-dihydro-1H-1,3-benzodiphosphine complexes via phosphorus-carbon bond formation
- 2009
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Ingår i: Journal of Organometallic Chemistry. - : Elsevier BV. - 0022-328X. ; 694:20, s. 3312-3319
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Tidskriftsartikel (refereegranskat)abstract
- Reaction of [Ru(CO)(9){mu(3-)eta(1),kappa(1),kappa(2)-PhP(C6H4)CH2PPh}] (1) with tri(2-thienyl) phosphine (PTh3) in refluxing THF afforded [Ru-3(CO)(9)(PTh3)(mu-dpbm)] (3){dpbm = PhP(C6H4)(CH2)PPh} and [Ru-3(CO)(6)(mu-CO)(2){mu-kappa(1),eta(1)-PTh2(C4H2S)}{mu(3)-kappa(1),ka ppa(2)-Ph2PCH2PPh}] (5) in 18% and 12% yields, respectively, while a similar reaction with tri(2-furyl)phosphine (PFu(3)) gave [Ru-3(CO)(9)(PFu(3))(mu-dpbm)] (4) and [Ru-3(CO)(7)(mu-eta(1),eta(2)-C4H3O)(mu-PFu(2)){mu(3)-eta(1),kappa(1),ka ppa(2)-PhP(C6H4)CH2PPh}] (6) in 24% and 27% yields, respectively. Compounds 2 and 4 are phosphine adducts of 1 in which the diphosphine ligand is transformed into 1,3-diphenyl-2,3-dihydro-1H-1,3-benzodiphosphine(dpbm) via phosphorus-carbon bond formation. Cluster 5 results from metalation of a thienyl ring, the cleved proton being transfoerred to the diphosphine.Carbon-phosphorus bond clevarge of a PFu(3) ligand is observed in 6 to afford a phosphido-bridge and furyl fragment, the latter bridging in a sigma,pi-vinyl fashion. The molecular strucutres of 3,5 and 6 have been determined by X-ray diffraction studies. (C) 2009 Published by Elsevier B.V.
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| 8. |
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| 9. |
- Mondal, Suman Kumar, et al.
(författare)
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Is There Any Linkage between Interstellar Aldehyde and Alcohol?
- 2021
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Ingår i: Astrophysical Journal. - : American Astronomical Society. - 1538-4357 .- 0004-637X. ; 922:2
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Tidskriftsartikel (refereegranskat)abstract
- It is speculated that there might be some linkage between interstellar aldehydes and their corresponding alcohols. Here an observational study and astrochemical modeling are coupled together to illustrate the connection between them. The ALMA cycle 4 data of a hot molecular core, G10.47+0.03, are utilized for this study. Various aldehydes (acetaldehyde, propanal, and glycolaldehyde), alcohols (methanol and ethylene glycol), and a ketone (acetone) are identified in this source. The excitation temperatures and column densities of these species were derived via the rotation diagram method assuming local thermodynamic equilibrium conditions. An extensive investigation is carried out to understand the formation of these species. Six pairs of aldehyde-alcohol are considered for this study: (i) methanal and methanol, (ii) ethanal and ethanol, (iii) propanal and 1-propanol, (iv) propenal and allyl alcohol, (v) propynal and propargyl alcohol, and (vi) glycolaldehyde and ethylene glycol. One pair of ketone-alcohol (acetone and isopropanol) and ketene-alcohol (ethenone and vinyl alcohol) are also considered. Two successive hydrogenation reactions in the ice phase are examined to form these alcohols from aldehydes, ketone, and ketene, respectively. Quantum chemical methods are extensively executed to review the ice-phase formation route and the kinetics of these species. Based on the obtained kinetic data, astrochemical modeling is employed to derive the abundances of these aldehydes, alcohols, ketone, and ketene in this source. It is seen that our model could successfully explain the observed abundances of various species in this hot molecular core.
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| 10. |
- Sil, Milan, et al.
(författare)
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Chemical Complexity of Phosphorous-bearing Species in Various Regions of the Interstellar Medium
- 2021
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Ingår i: Astronomical Journal. - : American Astronomical Society. - 1538-3881 .- 0004-6256. ; 162:3
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Tidskriftsartikel (refereegranskat)abstract
- Phosphorus-related species are not known to be as omnipresent in space as hydrogen, carbon, nitrogen, oxygen, and sulfur-bearing species. Astronomers spotted very few P-bearing molecules in the interstellar medium and circumstellar envelopes. Limited discovery of the P-bearing species imposes severe constraints in modeling the P-chemistry. In this paper, we carry out extensive chemical models to follow the fate of P-bearing species in diffuse clouds, photon-dominated or photodissociation regions (PDRs), and hot cores/corinos. We notice a curious correlation between the abundances of PO and PN and atomic nitrogen. Since N atoms are more abundant in diffuse clouds and PDRs than in the hot core/corino region, PO/PN reflects <1 in diffuse clouds, MUCH LESS-THAN1 in PDRs, and >1 in the late warm-up evolutionary stage of the hot core/corino regions. During the end of the post-warm-up stage, we obtain PO/PN > 1 for hot core and <1 for its low-mass analog. We employ a radiative transfer model to investigate the transitions of some of the P-bearing species in diffuse cloud and hot core regions and estimate the line profiles. Our study estimates the required integration time to observe these transitions with ground-based and space-based telescopes. We also carry out quantum chemical computation of the infrared features of PH3, along with various impurities. We notice that SO2 overlaps with the PH3 bending-scissoring modes around similar to 1000-1100 cm(-1). We also find that the presence of CO2 can strongly influence the intensity of the stretching modes around similar to 2400 cm(-1) of PH3.
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