| 1. |
- In ’t Veld, Sjors G.J.G., et al.
(författare)
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Detection and localization of early- and late-stage cancers using platelet RNA
- 2022
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Ingår i: Cancer Cell. - : Elsevier. - 1535-6108 .- 1878-3686. ; 40:9, s. 999-1009.e6
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Tidskriftsartikel (refereegranskat)abstract
- Cancer patients benefit from early tumor detection since treatment outcomes are more favorable for less advanced cancers. Platelets are involved in cancer progression and are considered a promising biosource for cancer detection, as they alter their RNA content upon local and systemic cues. We show that tumor-educated platelet (TEP) RNA-based blood tests enable the detection of 18 cancer types. With 99% specificity in asymptomatic controls, thromboSeq correctly detected the presence of cancer in two-thirds of 1,096 blood samples from stage I–IV cancer patients and in half of 352 stage I–III tumors. Symptomatic controls, including inflammatory and cardiovascular diseases, and benign tumors had increased false-positive test results with an average specificity of 78%. Moreover, thromboSeq determined the tumor site of origin in five different tumor types correctly in over 80% of the cancer patients. These results highlight the potential properties of TEP-derived RNA panels to supplement current approaches for blood-based cancer screening.
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| 2. |
- Alcorn, J, et al.
(författare)
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Basic instrumentation for Hall A at Jefferson Lab
- 2004
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Ingår i: Nuclear Instruments & Methods in Physics Research. Section A: Accelerators, Spectrometers, Detectors, and Associated Equipment. - : Elsevier BV. - 0167-5087 .- 0168-9002. ; 522:3, s. 294-346
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Tidskriftsartikel (refereegranskat)abstract
- The instrumentation in Hall A at the Thomas Jefferson National Accelerator Facility was designed to study electro-and photo-induced reactions at very high luminosity and good momentum and angular resolution for at least one of the reaction products. The central components of Hall A are two identical high resolution spectrometers, which allow the vertical drift chambers in the focal plane to provide a momentum resolution of better than 2 x 10(-4). A variety of Cherenkov counters, scintillators and lead-glass calorimeters provide excellent particle identification. The facility has been operated successfully at a luminosity well in excess of 10(38) CM-2 s(-1). The research program is aimed at a variety of subjects, including nucleon structure functions, nucleon form factors and properties of the nuclear medium. (C) 2003 Elsevier B.V. All rights reserved.
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| 3. |
- Ali, M, et al.
(författare)
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T cells targeted to TdT kill leukemic lymphoblasts while sparing normal lymphocytes
- 2022
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Ingår i: Nature biotechnology. - : Springer Science and Business Media LLC. - 1546-1696 .- 1087-0156. ; 40:4, s. 488-
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Tidskriftsartikel (refereegranskat)abstract
- Unlike chimeric antigen receptors, T-cell receptors (TCRs) can recognize intracellular targets presented on human leukocyte antigen (HLA) molecules. Here we demonstrate that T cells expressing TCRs specific for peptides from the intracellular lymphoid-specific enzyme terminal deoxynucleotidyl transferase (TdT), presented in the context of HLA-A*02:01, specifically eliminate primary acute lymphoblastic leukemia (ALL) cells of T- and B-cell origin in vitro and in three mouse models of disseminated B-ALL. By contrast, the treatment spares normal peripheral T- and B-cell repertoires and normal myeloid cells in vitro, and in vivo in humanized mice. TdT is an attractive cancer target as it is highly and homogeneously expressed in 80–94% of B- and T-ALLs, but only transiently expressed during normal lymphoid differentiation, limiting on-target toxicity of TdT-specific T cells. TCR-modified T cells targeting TdT may be a promising immunotherapy for B-ALL and T-ALL that preserves normal lymphocytes.
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| 4. |
- Haley, C. S., et al.
(författare)
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Retrievals of stratospheric O3 and NO2 profiles from Odin Optical Spectrograph and InfraRed Imager System (OSIRIS) limb-scattered sunlight measurements
- 2004
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Ingår i: Journal of Geophysical Research. - 0148-0227 .- 2156-2202. ; 109:D16
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Tidskriftsartikel (refereegranskat)abstract
- Scientific studies of the major environmental questions of global warming and ozone depletion require global data sets of atmospheric constituents with relevant temporal and spatial resolution. In this paper global number density profiles of O3 and NO2 are retrieved from Odin/OSIRIS limb-scattered sunlight measurements, using the Maximum A Posteriori estimator. Differential Optical Absorption Spectroscopy is applied to OSIRIS radiances as an intermediate step, using the wavelength windows 571-617 nm for O3 and 435-451 nm for NO2. The method is computationally efficient for processing OSIRIS data on an operational basis. Results show that a 2-3 km height resolution is generally achievable between about 12 km and 45 km for O3 with an estimated accuracy of 13\% at the peak and between about 15 km and 40 km for NO2 with an estimated accuracy of 10\% at the peak. First validations of the retrieved data indicate a good agreement both with other retrieval techniques applied to OSIRIS measurements and with the results of other instruments. Once the validation has reached a confident level, the retrieved data will be used to study important stratospheric processes relevant to global environmental problems. The unique NO2 data set will be of particular interest for studies of nitrogen chemistry in the middle atmosphere.
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| 5. |
- Nowak-Sliwinska, Patrycja, et al.
(författare)
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Consensus guidelines for the use and interpretation of angiogenesis assays
- 2018
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Ingår i: Angiogenesis. - : Springer. - 0969-6970 .- 1573-7209. ; 21:3, s. 425-532
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Forskningsöversikt (refereegranskat)abstract
- The formation of new blood vessels, or angiogenesis, is a complex process that plays important roles in growth and development, tissue and organ regeneration, as well as numerous pathological conditions. Angiogenesis undergoes multiple discrete steps that can be individually evaluated and quantified by a large number of bioassays. These independent assessments hold advantages but also have limitations. This article describes in vivo, ex vivo, and in vitro bioassays that are available for the evaluation of angiogenesis and highlights critical aspects that are relevant for their execution and proper interpretation. As such, this collaborative work is the first edition of consensus guidelines on angiogenesis bioassays to serve for current and future reference.
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| 6. |
- Petelina, S., et al.
(författare)
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Comparison of the Odin/OSIRIS stratospheric ozone profiles with coincident POAM III and ozonesonde measurements
- 2004
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Ingår i: Geophysical Research Letters. - 1944-8007 .- 0094-8276. ; 31:7, s. L07104-
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Tidskriftsartikel (refereegranskat)abstract
- We present first statistical comparison results for stratospheric ozone density profiles retrieved from Odin/OSIRIS limb scattered radiance with 1220 coincident POAM III and 205 coincident ozonesonde measurements. Profiles are compared on a monthly basis from November 2001 to October 2002. Most of the time, differences between OSIRIS mean profiles and those measured by POAM III and ozonesondes were 5-7% between 15 km and 32 km, and within 15% above 32 km. In April-July 2002, OSIRIS mean profiles appear shifted downward by ∼1 km, introducing a difference of about 10% with POAM III and about 25% with ozonesonde profiles between 15 km and 32 km. This study demonstrates that outside the April-July 2002 period, the OSIRIS ozone profiles agree well with coincident ozonesonde and POAM III ozone profiles and make a valuable addition to the international ozone database available for research into global ozone change.
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| 9. |
- Kremer, A. N., et al.
(författare)
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Development of a coordinated allo T cell and auto B cell response against autosomal PTK2B after allogeneic hematopoietic stem cell transplantation
- 2014
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Ingår i: Haematologica. - : Ferrata Storti Foundation (Haematologica). - 0390-6078 .- 1592-8721. ; 99:2, s. 365-369
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Tidskriftsartikel (refereegranskat)abstract
- It is well known that allo-reactive T cells play a crucial role in graft-versus-leukemia and graft-versus-host disease after allogeneic hematopoietic stem cell transplantation (alloSCT). Allo-reactive CD4+ T cells can mediate direct cytolysis, but may also stimulate production of IgG antibodies as helper cells. Immune complexes may subsequently be processed and presented by professional antigen presenting cells and stimulate induction of specific CD8+ T cells. As such, proteins targeted in coordinated T- and B-cell responses may represent a class of immunodominant antigens in clinical responses after alloSCT. We previously identified LB-PTK2B-1T as HLA class II restricted polymorphic antigen in a patient treated with donor lymphocyte infusion for relapsed chronic myeloid leukemia after HLA-matched alloSCT. Since PTK2B has also been described as antibody target, we here investigated whether a coordinated T- and B-cell response against PTK2B was induced. Patient serum before and after alloSCT and donor lymphocyte infusion (DLI) was screened for antibodies, and we indeed observed development of a humoral immune response against PTK2B. Antibodies against PTK2B were only found after DLI and, in contrast to the CD4+ T cells, recognized a monomorphic region of the protein. To our knowledge, this is the first description of a coordinated allo-reactive CD4+ T-cell and auto-reactive antibody response against an autosomal antigen.
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| 10. |
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