| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
- Guseva, S., et al.
(författare)
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Bulk Transfer Coefficients Estimated From Eddy-Covariance Measurements Over Lakes and Reservoirs
- 2023
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Ingår i: Journal of Geophysical Research - Atmospheres. - : American Geophysical Union (AGU). - 2169-897X .- 2169-8996. ; 128:2
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Tidskriftsartikel (refereegranskat)abstract
- The drag coefficient, Stanton number and Dalton number are of particular importance for estimating the surface turbulent fluxes of momentum, heat and water vapor using bulk parameterization. Although these bulk transfer coefficients have been extensively studied over the past several decades in marine and large-lake environments, there are no studies analyzing their variability for smaller lakes. Here, we evaluated these coefficients through directly measured surface fluxes using the eddy-covariance technique over more than 30 lakes and reservoirs of different sizes and depths. Our analysis showed that the transfer coefficients (adjusted to neutral atmospheric stability) were generally within the range reported in previous studies for large lakes and oceans. All transfer coefficients exhibit a substantial increase at low wind speeds (<3 m s(-1)), which was found to be associated with the presence of gusts and capillary waves (except Dalton number). Stanton number was found to be on average a factor of 1.3 higher than Dalton number, likely affecting the Bowen ratio method. At high wind speeds, the transfer coefficients remained relatively constant at values of 1.6.10(-3), 1.4.10(-3), 1.0.10(-3), respectively. We found that the variability of the transfer coefficients among the lakes could be associated with lake surface area. In flux parameterizations at lake surfaces, it is recommended to consider variations in the drag coefficient and Stanton number due to wind gustiness and capillary wave roughness while Dalton number could be considered as constant at all wind speeds. Plain Language Summary In our study, we investigate the bulk transfer coefficients, which are of particular importance for estimation the turbulent fluxes of momentum, heat and water vapor in the atmospheric surface layer, above lakes and reservoirs. The incorrect representation of the surface fluxes above inland waters can potentially lead to errors in weather and climate prediction models. For the first time we made this synthesis using a compiled data set consisting of existing eddy-covariance flux measurements over 23 lakes and 8 reservoirs. Our results revealed substantial increase of the transfer coefficients at low wind speeds, which is often not taken into account in models. The observed increase in the drag coefficient (momentum transfer coefficient) and Stanton number (heat transfer coefficient) could be associated with the presence of wind gusts and capillary waves. In flux parameterizations at lake surface, it is recommended to consider them for accurate flux representation. Although the bulk transfer coefficients were relatively constant at high wind speeds, we found that the Stanton number systematically exceeds the Dalton number (water vapor transfer coefficient), despite the fact they are typically considered to be equal. This difference may affect the Bowen ratio method and result in biased estimates of lake evaporation.
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| 3. |
- Nauman, Farrukh, 1985, et al.
(författare)
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Energy transfers in magnetohydrodynamic shear turbulence
- 2020
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Ingår i: Journal of Physics: Conference Series. - : IOP Publishing. - 1742-6588 .- 1742-6596. ; 1522:1
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Konferensbidrag (refereegranskat)abstract
- Astrophysical flows span a broad range of scales and thus require sub-grid modeling. We compute the energy fluxes in the Fourier and physical space for the turbulent magnetized shearing box simulations with a weak net vertical magnetic flux. The energy fluxes are dominated by the injection term from the mid-to-large scale range due to the Reynolds and Maxwell stresses in both cases while the small scales are dominated by dissipation. Since the nature of turbulent cascades requires a clear separation of scales, our work is unable to address these questions conclusively. But because our work is the first of its nature in trying to connect the Fourier and physical space energy flux behavior, we are able to make connections between the two profiles.
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