| 1. |
- McMahon, C. R., et al.
(author)
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Animal Borne Ocean Sensors - AniBOS - An Essential Component of the Global Ocean Observing System
- 2021
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In: Frontiers in Marine Science. - : Frontiers Media SA. - 2296-7745. ; 8
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Research review (peer-reviewed)abstract
- Marine animals equipped with biological and physical electronic sensors have produced long-term data streams on key marine environmental variables, hydrography, animal behavior and ecology. These data are an essential component of the Global Ocean Observing System (GOOS). The Animal Borne Ocean Sensors (AniBOS) network aims to coordinate the long-term collection and delivery of marine data streams, providing a complementary capability to other GOOS networks that monitor Essential Ocean Variables (EOVs), essential climate variables (ECVs) and essential biodiversity variables (EBVs). AniBOS augments observations of temperature and salinity within the upper ocean, in areas that are under-sampled, providing information that is urgently needed for an improved understanding of climate and ocean variability and for forecasting. Additionally, measurements of chlorophyll fluorescence and dissolved oxygen concentrations are emerging. The observations AniBOS provides are used widely across the research, modeling and operational oceanographic communities. High latitude, shallow coastal shelves and tropical seas have historically been sampled poorly with traditional observing platforms for many reasons including sea ice presence, limited satellite coverage and logistical costs. Animal-borne sensors are helping to fill that gap by collecting and transmitting in near real time an average of 500 temperature-salinity-depth profiles per animal annually and, when instruments are recovered (similar to 30% of instruments deployed annually, n = 103 +/- 34), up to 1,000 profiles per month in these regions. Increased observations from under-sampled regions greatly improve the accuracy and confidence in estimates of ocean state and improve studies of climate variability by delivering data that refine climate prediction estimates at regional and global scales. The GOOS Observations Coordination Group (OCG) reviews, advises on and coordinates activities across the global ocean observing networks to strengthen the effective implementation of the system. AniBOS was formally recognized in 2020 as a GOOS network. This improves our ability to observe the ocean's structure and animals that live in them more comprehensively, concomitantly improving our understanding of global ocean and climate processes for societal benefit consistent with the UN Sustainability Goals 13 and 14: Climate and Life below Water. Working within the GOOS OCG framework ensures that AniBOS is an essential component of an integrated Global Ocean Observing System.
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| 2. |
- Portela, E., et al.
(author)
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Controls on Dense Shelf Water Formation in Four East Antarctic Polynyas
- 2022
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In: Journal of Geophysical Research: Oceans. - 2169-9275. ; 127:12
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Journal article (peer-reviewed)abstract
- Coastal polynyas are key formation regions for dense shelf water (DSW) that ultimately contributes to the ventilation of the ocean abyss. However, not all polynyas form DSW. We examine how the physiographic setting, water-mass distribution and transformation, water column stratification, and sea-ice production regulate DSW formation in four East Antarctic coastal polynyas. We use a salt budget to estimate the relative contribution of sea-ice production and lateral advection to the monthly change in salinity in each polynya. DSW forms in Mackenzie polynya due to a combination of physical features (shallow water depth and a broad continental shelf) and high sea-ice production. Sea-ice formation begins early (March) in Mackenzie polynya, counteracting fresh advection and establishing a salty mixed layer in autumn that preconditions the water column for deep convection in winter. Sea-ice production is moderate in the other three polynyas, but saline DSW is not formed (a fresh variety is formed in the Barrier polynya). In the Shackleton polynya, brine rejection during winter is insufficient to overcome the very fresh autumn mixed layer. In Vincennes Bay, a strong inflow of modified Circumpolar Deep Water stratifies the water column, hindering deep convection and DSW formation. Our study highlights that DSW formation in a given polynya depends on a complex combination of factors, some of which may be strongly altered under a changing climate, with potentially important consequences for the ventilation of the deep ocean, the global meridional overturning circulation, and the transport of ocean heat to Antarctic ice shelves.
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| 3. |
- Kumar, Nitin, et al.
(author)
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Adaptation of host transmission cycle during Clostridium difficile speciation
- 2019
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In: Nature Genetics. - : Nature Publishing Group. - 1061-4036 .- 1546-1718. ; 51:9, s. 1315-1320
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Journal article (peer-reviewed)abstract
- Bacterial speciation is a fundamental evolutionary process characterized by diverging genotypic and phenotypic properties. However, the selective forces that affect genetic adaptations and how they relate to the biological changes that underpin the formation of a new bacterial species remain poorly understood. Here, we show that the spore-forming, healthcare-associated enteropathogen Clostridium difficile is actively undergoing speciation. Through large-scale genomic analysis of 906 strains, we demonstrate that the ongoing speciation process is linked to positive selection on core genes in the newly forming species that are involved in sporulation and the metabolism of simple dietary sugars. Functional validation shows that the new C. difficile produces spores that are more resistant and have increased sporulation and host colonization capacity when glucose or fructose is available for metabolism. Thus, we report the formation of an emerging C. difficile species, selected for metabolizing simple dietary sugars and producing high levels of resistant spores, that is adapted for healthcare-mediated transmission.
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| 4. |
- Labrousse, S., et al.
(author)
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Weddell seal behaviour during an exceptional oceanographic event in the Filchner-Ronne Ice Shelf in 2017
- 2021
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In: Antarctic Science. - : Cambridge University Press (CUP). - 0954-1020 .- 1365-2079. ; 33:3, s. 252-264
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Journal article (peer-reviewed)abstract
- Rapid and regionally contrasting climate changes have been observed around Antarctica. However, our understanding of the impact of these changes on ecosystems remains limited, and there is an urgent need to better identify habitats of Antarctic species. The Weddell seal (Leptonychotes weddellii) is a circumpolar mesopredator and an indicative species of Antarctic marine communities. It has been extensively studied in the western Ross Sea and East Antarctica, and an understanding of its ecology in the Weddell Sea in the wintertime is emerging. We documented the behavioural response(s) of four Weddell seals from February to June in 2017 in the Filchner-Ronne Ice Shelf region and related these to unusual oceanographic conditions in 2017. Unexpectedly, we found that Weddell seals had the longest foraging effort within the outflow of Ice Shelf Water or at its turbulent boundary. They also foraged on the eastern side of the trough from April to June within the Modified Warm Deep Water and seem to take advantage of the unusual conditions of persistent inflow of warm waters through the winter. Linking animal behavioural responses to oceanographic conditions is informative for quantifying rarely recorded events and provides great insight into how predators may respond to changing conditions.
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| 5. |
- Pauthenet, E., et al.
(author)
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Seasonal Meandering of the Polar Front Upstream of the Kerguelen Plateau
- 2018
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In: Geophysical Research Letters. - : American Geophysical Union (AGU). - 0094-8276 .- 1944-8007. ; 45:18, s. 9774-9781
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Journal article (peer-reviewed)abstract
- The location of the Antarctic Polar Front (PF) is mapped in the Southern Indian Ocean by decomposing the shape of temperature and salinity profiles into vertical modes using a functional Principal Component Analysis. We define the PF as the northernmost minimum of temperature at the subsurface and represent it as a linear combination of the first three modes. This method is applied on an ocean reanalysis data set and on in situ observations, revealing a seasonal variability of the PF latitudinal position that is most pronounced between the Conrad Rise and the Kerguelen Plateau. This shift coincides with variations in the transport across the Northern Kerguelen Plateau. We suggest that seasonal changes of the upper stratification may drive the observed variability of the PF, with potentially large implications for the pathways and residence time of water masses over the plateau and the phytoplankton bloom extending southeast of the Kerguelen Islands. Plain Language Summary The Antarctic Polar Front (PF) is a water mass boundary that flows around Antarctica between approximately 48 degrees S and 56 degrees S in the Southern Indian Ocean. The position of the PF in space and time is important to understand the oceanic circulation, the heat and salt exchanges, and also marine ecosystems. In the Indian sector the PF has to cross the Kerguelen Plateau, a major bottom topography feature. The present study develops and then applies a novel method for mapping the PF taking into account the whole hydrographic structure in the upper 300 m of the ocean. We are able to map the PF position and find that it presents large seasonal variations that are more intense just west of the Kerguelen Plateau. Between the Conrad Rise and the Kerguelen Plateau, the PF is essentially zonally orientated in September and found farther south by up to 4 degrees latitude in March. Shifts in the PF position are shown to correlate with a seasonal variation in volume transport between Kerguelen and Heard Islands. We discuss how these seasonal variations in circulation pathways could have an impact on the local marine ecosystems.
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| 6. |
- Pauthenet, Etienne, 1991-, et al.
(author)
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Seasonal Meandering of the Polar Front Upstream of the Kerguelen Plateau
- 2018
-
In: Geophysical Research Letters. - 0094-8276 .- 1944-8007. ; 45:18, s. 9774-9781
-
Journal article (peer-reviewed)abstract
- The location of the Antarctic Polar Front (PF) is mapped in the Southern Indian Ocean bydecomposing the shape of temperature and salinity profiles into vertical modes using a functional PrincipalComponent Analysis. We define the PF as the northernmost minimum of temperature at the subsurface andrepresent it as a linear combination of the first three modes. This method is applied on an ocean reanalysisdata set and on in situ observations, revealing a seasonal variability of the PF latitudinal position that ismost pronounced between the Conrad Rise and the Kerguelen Plateau. This shift coincides with variationsin the transport across the Northern Kerguelen Plateau. We suggest that seasonal changes of the upperstratification may drive the observed variability of the PF, with potentially large implications for thepathways and residence time of water masses over the plateau and the phytoplankton bloom extendingsoutheast of the Kerguelen Islands.
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| 7. |
- Williams, G. D., et al.
(author)
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The suppression of Antarctic bottom water formation by melting ice shelves in Prydz Bay
- 2016
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In: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 7
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Journal article (peer-reviewed)abstract
- A fourth production region for the globally important Antarctic bottom water has been attributed to dense shelf water formation in the Cape Darnley Polynya, adjoining Prydz Bay in East Antarctica. Here we show new observations from CTD-instrumented elephant seals in 2011-2013 that provide the first complete assessment of dense shelf water formation in Prydz Bay. After a complex evolution involving opposing contributions from three polynyas (positive) and two ice shelves (negative), dense shelf water (salinity 34.65-34.7) is exported through Prydz Channel. This provides a distinct, relatively fresh contribution to Cape Darnley bottom water. Elsewhere, dense water formation is hindered by the freshwater input from the Amery and West Ice Shelves into the Prydz Bay Gyre. This study highlights the susceptibility of Antarctic bottom water to increased freshwater input from the enhanced melting of ice shelves, and ultimately the potential collapse of Antarctic bottom water formation in a warming climate.
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| 8. |
- Everitt, Aaron R, et al.
(author)
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Defining the range of pathogens susceptible to Ifitm3 restriction using a knockout mouse model
- 2013
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In: PLOS ONE. - : Public Library of Science. - 1932-6203. ; 8:11, s. e80723-e80723
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Journal article (peer-reviewed)abstract
- The interferon-inducible transmembrane (IFITM) family of proteins has been shown to restrict a broad range of viruses in vitro and in vivo by halting progress through the late endosomal pathway. Further, single nucleotide polymorphisms (SNPs) in its sequence have been linked with risk of developing severe influenza virus infections in humans. The number of viruses restricted by this host protein has continued to grow since it was first demonstrated as playing an antiviral role; all of which enter cells via the endosomal pathway. We therefore sought to test the limits of antimicrobial restriction by Ifitm3 using a knockout mouse model. We showed that Ifitm3 does not impact on the restriction or pathogenesis of bacterial (Salmonella typhimurium, Citrobacter rodentium, Mycobacterium tuberculosis) or protozoan (Plasmodium berghei) pathogens, despite in vitro evidence. However, Ifitm3 is capable of restricting respiratory syncytial virus (RSV) in vivo either through directly restricting RSV cell infection, or by exerting a previously uncharacterised function controlling disease pathogenesis. This represents the first demonstration of a virus that enters directly through the plasma membrane, without the need for the endosomal pathway, being restricted by the IFITM family; therefore further defining the role of these antiviral proteins.
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| 9. |
- Harcourt, R., et al.
(author)
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Animal-borne telemetry: An integral component of the ocean observing toolkit
- 2019
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In: Frontiers in Marine Science. - : Frontiers Media SA. - 2296-7745. ; 6:JUN
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Journal article (peer-reviewed)abstract
- Animal telemetry is a powerful tool for observing marine animals and the physical environments that they inhabit, from coastal and continental shelf ecosystems to polar seas and open oceans. Satellite-linked biologgers and networks of acoustic receivers allow animals to be reliably monitored over scales of tens of meters to thousands of kilometers, giving insight into their habitat use, home range size, the phenology of migratory patterns and the biotic and abiotic factors that drive their distributions. Furthermore, physical environmental variables can be collected using animals as autonomous sampling platforms, increasing spatial and temporal coverage of global oceanographic observation systems. The use of animal telemetry, therefore, has the capacity to provide measures from a suite of essential ocean variables (EOVs) for improved monitoring of Earth's oceans. Here we outline the design features of animal telemetry systems, describe current applications and their benefits and challenges, and discuss future directions. We describe new analytical techniques that improve our ability to not only quantify animal movements but to also provide a powerful framework for comparative studies across taxa. We discuss the application of animal telemetry and its capacity to collect biotic and abiotic data, how the data collected can be incorporated into ocean observing systems, and the role these data can play in improved ocean management. © 2019 Harcourt, Sequeira, Zhang, Roquet, Komatsu, Heupel, McMahon, Whoriskey, Meekan, Carroll, Brodie, Simpfendorfer, Hindell, Jonsen, Costa, Block, Muelbert, Woodward, Weise, Aarestrup, Biuw, Boehme, Bograd, Cazau, Charrassin, Cooke, Cowley, de Bruyn, Jeanniard du Dot, Duarte, Eguíluz, Ferreira, Fernández-Gracia, Goetz, Goto, Guinet, Hammill, Hays, Hazen, Hückstädt, Huveneers, Iverson, Jaaman, Kittiwattanawong, Kovacs, Lydersen, Moltmann, Naruoka, Phillips, Picard, Queiroz, Reverdin, Sato, Sims, Thorstad, Thums, Treasure, Trites, Williams, Yonehara and Fedak.
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| 10. |
- Hindell, Mark A., et al.
(author)
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Circumpolar habitat use in the southern elephant seal : implications for foraging success and population trajectories
- 2016
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In: Ecosphere. - : Wiley. - 2150-8925 .- 2150-8925. ; 7:5
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Journal article (peer-reviewed)abstract
- In the Southern Ocean, wide-ranging predators offer the opportunity to quantify how animals respond to differences in the environment because their behavior and population trends are an integrated signal of prevailing conditions within multiple marine habitats. Southern elephant seals in particular, can provide useful insights due to their circumpolar distribution, their long and distant migrations and their performance of extended bouts of deep diving. Furthermore, across their range, elephant seal populations have very different population trends. In this study, we present a data set from the International Polar Year project; Marine Mammals Exploring the Oceans Pole to Pole for southern elephant seals, in which a large number of instruments (N = 287) deployed on animals, encompassing a broad circum-Antarctic geographic extent, collected in situ ocean data and at-sea foraging metrics that explicitly link foraging behavior and habitat structure in time and space. Broadly speaking, the seals foraged in two habitats, the relatively shallow waters of the Antarctic continental shelf and the Kerguelen Plateau and deep open water regions. Animals of both sexes were more likely to exhibit area-restricted search (ARS) behavior rather than transit in shelf habitats. While Antarctic shelf waters can be regarded as prime habitat for both sexes, female seals tend to move northwards with the advance of sea ice in the late autumn or early winter. The water masses used by the seals also influenced their behavioral mode, with female ARS behavior being most likely in modified Circumpolar Deepwater or northerly Modified Shelf Water, both of which tend to be associated with the outer reaches of the Antarctic Continental Shelf. The combined effects of (1) the differing habitat quality, (2) differing responses to encroaching ice as the winter progresses among colonies, (3) differing distances between breeding and haul-out sites and high quality habitats, and (4) differing long-term -regional trends in sea ice extent can explain the differing population trends observed among elephant seal colonies.
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