| 1. |
- Clark, Andrew G., et al.
(författare)
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Evolution of genes and genomes on the Drosophila phylogeny
- 2007
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 450:7167, s. 203-218
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Tidskriftsartikel (refereegranskat)abstract
- Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.
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| 2. |
- Hillier, Ladeana W, et al.
(författare)
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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
- 2004
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Ingår i: Nature. - 0028-0836 .- 1476-4687. ; 432:7018, s. 695-716
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Tidskriftsartikel (refereegranskat)abstract
- We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the chicken is a modern descendant of the dinosaurs and the first non-mammalian amniote to have its genome sequenced, the draft sequence of its genome--composed of approximately one billion base pairs of sequence and an estimated 20,000-23,000 genes--provides a new perspective on vertebrate genome evolution, while also improving the annotation of mammalian genomes. For example, the evolutionary distance between chicken and human provides high specificity in detecting functional elements, both non-coding and coding. Notably, many conserved non-coding sequences are far from genes and cannot be assigned to defined functional classes. In coding regions the evolutionary dynamics of protein domains and orthologous groups illustrate processes that distinguish the lineages leading to birds and mammals. The distinctive properties of avian microchromosomes, together with the inferred patterns of conserved synteny, provide additional insights into vertebrate chromosome architecture.
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| 3. |
- Gull, Theodore R., et al.
(författare)
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Eta Carinae : A Tale of Two Periastron Passages
- 2021
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Ingår i: Astrophysical Journal. - : Institute of Physics (IOP). - 0004-637X .- 1538-4357. ; 923:1, s. 102-102
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Tidskriftsartikel (refereegranskat)abstract
- Since 2002, the far-ultraviolet (FUV) flux (1150–1680 Å) of Eta Carinae, monitored by the Hubble Space Telescope/Space Telescope Imaging Spectrograph, has increased by an order of magnitude. This increase is attributed to partial dissipation of a line-of-sight (LOS) occulter that blocks the central core of the system. Across the 2020 February periastron passage, changes in the FUV emission show a stronger wavelength dependence than occurred across the 2003 July periastron passage. Across both periastron passages, most of the FUV spectrum dropped in flux then recovered a few months later. The 2020 periastron passage included enhancements of FUV flux in narrow spectral intervals near periastron followed by a transient absorption and recovery to pre-periastron flux levels. The drop in flux is due to increased absorption by singly ionized species as the secondary star plunges deep into the wind of the primary star, which blocks the companion's ionizing radiation. The enhanced FUV emission is caused by the companion's wind-blown cavity briefly opening a window to deeper layers of the primary star. This is the first time transient brightening has been seen in the FUV comparable to transients previously seen at longer wavelengths. Changes in resonance line-velocity profiles hint that the dissipating occulter is associated with material in LOS moving at −100 to −300 km s−1, similar in velocity of structures previously associated with the 1890s lesser eruption
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| 4. |
- Gull, Theodore R., et al.
(författare)
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Eta Carinae : An Evolving View of the Central Binary, Its Interacting Winds and Its Foreground Ejecta
- 2022
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Ingår i: Astrophysical Journal. - : IOP Publishing Ltd. - 0004-637X .- 1538-4357. ; 933:2, s. 1-28
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Tidskriftsartikel (refereegranskat)abstract
- FUV spectra of eta Car, recorded across two decades with HST/STIS, document multiple changes in resonant lines caused by dissipating extinction in our line of sight. The FUV flux has increased nearly tenfold, which has led to increased ionization of the multiple shells within the Homunculus and photodestruction of H-2. Comparison of observed resonant line profiles with CMFGEN model profiles allows separation of wind-wind collision and shell absorptions from the primary wind P Cygni profiles. The dissipating occulter preferentially obscured the central binary and interacting winds relative to the very extended primary wind. We are now able to monitor changes in the colliding winds with orbital phase. High-velocity transient absorptions occurred across the most recent periastron passage, indicating acceleration of the primary wind by the secondary wind, which leads to a downstream, high-velocity bow shock that is newly generated every orbital period. There is no evidence of changes in the properties of the binary winds.
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| 5. |
- Gull, Theodore R., et al.
(författare)
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Eta Carinae - The Dissipating Occulter Is an Extended Structure
- 2023
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Ingår i: Astrophysical Journal. - : Institute of Physics Publishing (IOPP). - 0004-637X .- 1538-4357. ; 954:1
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Tidskriftsartikel (refereegranskat)abstract
- Previous Hubble Space Telescope (HST)/Space Telescope Imaging Spectrograph (STIS) longslit observations of Eta Carinae (η Car) identified numerous absorption features in both the stellar spectrum, and in the adjacent nebular spectra, along our line of sight (LOS). The absorption features became temporarily stronger when the ionizing far-ultraviolet radiation field was reduced by the periastron passage of the secondary star. Subsequently, dissipation of a dusty structure in our LOS has led to a long-term increase in the apparent brightness of η Car, an increase in the ionizing ultraviolet (UV) radiation, and the disappearance of absorption from multiple velocity-separated shells extending across the foreground Homunculus lobe. We use HST/STIS spectro-images, coupled with published infrared and radio observations, to locate this intervening dusty structure. The velocity and spatial information indicate the occulter is ≈1000 au in front of η Car. The Homunculus is a transient structure composed of dusty, partially ionized ejecta that eventually will disappear due to the relentless rain of ionizing radiation and wind from the current binary system along with dissipation and mixing with the interstellar medium. This evolving complex continues to provide an astrophysical laboratory that changes on human timescales.
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| 6. |
- Pickett, Connor S., et al.
(författare)
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Changes in the Na D-1 Absorption Components of eta Carinae Provide Clues on the Location of the Dissipating Central Occulter
- 2022
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Ingår i: Astrophysical Journal. - : Institute of Physics (IOP). - 0004-637X .- 1538-4357. ; 937:2
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Tidskriftsartikel (refereegranskat)abstract
- The Na D absorption doublet in the spectrum of eta Carinae is complex, with multiple absorption features associated with the Great Eruption (1840s), the Lesser Eruption (1890s), and the interstellar clouds. The velocity profile is further complicated by the P Cygni profile originating in the system's stellar winds and blending with the He i lambda 5876 profile. The Na D profile contains a multitude of absorption components, including those at velocities of -145 km s(-1), -168 km s(-1), and +87 km s(-1), which we concentrate on in this analysis. Ground-based spectra recorded from 2008 to 2021 show significant variability of the -145 km s(-1) absorption throughout long-term observations. In the high-ionization phases of eta Carinae prior to the 2020 periastron passage, this feature disappeared completely but briefly reappeared across the 2020 periastron, along with a second absorption at -168 km s(-1). Over the past few decades, eta Carinae has been gradually brightening, which is shown to be caused by a dissipating occulter. The decreasing absorption of the -145 km s(-1) component, coupled with similar trends seen in absorptions of ultraviolet resonant lines, indicate that this central occulter was possibly a large clump associated with the Little Homunculus or another clump between the Little Homunculus and the star. We also report on a foreground absorption component at +87 km s(-1). Comparison of Na D absorption in the spectra of nearby systems demonstrates that this redshifted component likely originates in an extended foreground structure consistent with a previous ultraviolet spectral survey in the Carina Nebula.
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| 7. |
- Smith, Nathan, et al.
(författare)
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Kinematics and Ultraviolet to Infrared Morphology of the Inner Homunculus of η Carinae
- 2004
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Ingår i: Astrophysical Journal. - : American Astronomical Society. - 0004-637X .- 1538-4357. ; 605:1, s. 405-424
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Tidskriftsartikel (refereegranskat)abstract
- We present the first ultraviolet and optical images of η Car and itscircumstellar Homunculus nebula, obtained with the Advanced Camera forSurveys/High Resolution Camera (ACS/HRC) on board the Hubble SpaceTelescope (HST). Compared to those at visual wavelengths, UV imagesreveal excess emission 0.1"-0.6" from the central source along the minoraxis that may emanate from the outer parts of η Car's nonsphericalstellar wind, which dominates the UV flux from η Car. The UVemission fills the cavity inside a dust torus measured from infrared(IR) data; within 0.2" of the star the UV emission projects a morphologyreminiscent of the IR torus, but it is a factor of 10 smaller. This``little torus'' seen in the UV may be related to the ``LittleHomunculus'' discovered recently, signifying recurrent mass ejectionswith the same geometry. Finally, we reexamine the kinematics of nebularcondensations near the star (Weigelt objects C and D) in HST images andspectra obtained over the past decade. We measure heliocentricvelocities slower than previous estimates, and from proper motions wederive an ejection date of 1908+/-12 yr, assuming linear motion.However, because of radiative acceleration, these objects may have beenejected earlier-perhaps during the 1890 outburst of η Car.Based on observations made with the NASA/ESA Hubble Space Telescope,obtained at the Space Telescope Science Institute, operated by theAssociation of Universities for Research in Astronomy, Inc., under NASAcontract NAS 5-26555.
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| 8. |
- Blondin, Stéphane, et al.
(författare)
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StaNdaRT : a repository of standardised test models and outputs for supernova radiative transfer
- 2022
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Ingår i: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 668
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Tidskriftsartikel (refereegranskat)abstract
- We present the first results of a comprehensive supernova (SN) radiative-transfer (RT) code-comparison initiative (StaNdaRT), where the emission from the same set of standardised test models is simulated by currently used RT codes. We ran a total of ten codes on a set of four benchmark ejecta models of Type Ia SNe. We consider two sub-Chandrasekhar-mass (Mtot = 1.0 M⊙) toy models with analytic density and composition profiles and two Chandrasekhar-mass delayed-detonation models that are outcomes of hydrodynamical simulations. We adopt spherical symmetry for all four models. The results of the different codes, including the light curves, spectra, and the evolution of several physical properties as a function of radius and time are provided in electronic form in a standard format via a public repository. We also include the detailed test model profiles and several Python scripts for accessing and presenting the input and output files. We also provide the code used to generate the toy models studied here. In this paper, we describe the test models, radiative-transfer codes, and output formats in detail, and provide access to the repository. We present example results of several key diagnostic features.
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| 9. |
- Morris, P. W., et al.
(författare)
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Eta Carinae's Dusty Homunculus Nebula from Near-infrared to Submillimeter Wavelengths: Mass, Composition, and Evidence for Fading Opacity
- 2017
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Ingår i: Astrophysical Journal. - : American Astronomical Society. - 1538-4357 .- 0004-637X. ; 842:2, s. Article no. 79 -
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Tidskriftsartikel (refereegranskat)abstract
- Infrared observations of the dusty, massive Homunculus Nebula around the luminous blue variable eta Carinae are crucial to characterize the mass-loss history and help constrain the mechanisms leading to the great eruption. We present the 2.4-670 mu m spectral energy distribution, constructed from legacy Infrared Space Observatory observations and new spectroscopy obtained with the Herschel Space Observatory. Using radiative transfer modeling, we find that the two best-fit dust models yield compositions that are consistent with CNO-processed material, with iron, pyroxene and other metal-rich silicates, corundum, and magnesium-iron sulfide in common. Spherical corundum grains are supported by the good match to a narrow 20.2 mu m feature. Our preferred model contains nitrides AlN and Si3N4 in low abundances. Dust masses range from 0.25 to 0.44 M-circle dot, but M-tot. 45M(circle dot) in both cases, due to an expected high Fe gas-to-dust ratio. The bulk of dust is within a 5 '' x 7 '' central region. An additional compact feature is detected at 390 mu m. We obtain L-IR = 2.96 x 10(6) L-circle dot, a 25% decline from an average of mid-IR photometric levels observed in 1971-1977. This indicates a reduction in circumstellar extinction in conjunction with an increase in visual brightness, allowing 25%-40% of optical and UV radiation to escape from the central source. We also present an analysis of (CO)-C-12 and (CO)-C-13 J = 5-4 through 9-8 lines, showing that the abundances are consistent with expectations for CNO-processed material. The [C-12 II] line is detected in absorption, which we suspect originates in foreground material at very low excitation temperatures.
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