| 1. |
- Zamora, Juan Carlos, et al.
(författare)
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Considerations and consequences of allowing DNA sequence data as types of fungal taxa
- 2018
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Ingår i: IMA Fungus. - : INT MYCOLOGICAL ASSOC. - 2210-6340 .- 2210-6359. ; 9:1, s. 167-185
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Tidskriftsartikel (refereegranskat)abstract
- Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
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| 2. |
- Hoiland, Carl W., et al.
(författare)
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Detrital zircon U–Pb geochronology and Hf isotope geochemistry of metasedimentary strata in the southern Brooks Range : constraints on Neoproterozoic–Cretaceous evolution of Arctic Alaska
- 2018
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Ingår i: Geological Society Special Publication. - 0305-8719 .- 2041-4927. ; 460, s. 121-158
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Tidskriftsartikel (refereegranskat)abstract
- Mid-Palaeozoic assembly models for the Arctic Alaska–Chukotka microplate predict the presence of cryptic crustal sutures, the exact locations and deformational histories of which have not been identified in the field. This study presents data on the provenance of polydeformed and metamorphosed strata in the southern Brooks Range Schist Belt and Central Belt of presumed Proterozoic–Devonian depositional age, as well as for the structurally overlying strata, to help elucidate terrane boundaries within the Arctic Alaska–Chukotka microplate and to add new constraints to the palaeogeographical evolution of its constituent parts. The protoliths identified support correlations with metasedimentary strata in the Ruby terrane and Seward Peninsula and suggest a (peri-) Baltican origin in late Neoproterozoic–early Palaeozoic time. Proximity to Laurentia is only evident in what are inferred to be post-early Devonian age strata. By contrast, the North Slope and Apoon terranes originated proximal to Laurentia. The mid-Palaeozoic boundary between these (peri-) Baltican and (peri-) Laurentian terranes once lay between rocks of the Schist/Central belts and those of the Apoon terrane, but is obscured by severe Mesozoic–Cenozoic deformation. Whether this boundary represents a convergent or transform suture, when exactly it formed and how it relates to broader Caledonian convergence in the North Atlantic are still unresolved questions.
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| 3. |
- Kõljalg, Urmas, et al.
(författare)
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UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi
- 2005
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Ingår i: New Phytologist. - : Wiley. - 0028-646X .- 1469-8137. ; 166:3, s. 1063-1068
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Tidskriftsartikel (refereegranskat)abstract
- Identification of ectomycorrhizal (ECM) fungi is often achieved through comparisons of ribosomal DNA internal transcribed spacer (ITS) sequences with accessioned sequences deposited in public databases. A major problem encountered is that annotation of the sequences in these databases is not always complete or trustworthy. In order to overcome this deficiency, we report on UNITE, an open-access database. UNITE comprises well annotated fungal ITS sequences from well defined herbarium specimens that include full herbarium reference identification data, collector/source and ecological data. At present UNITE contains 758 ITS sequences from 455 species and 67 genera of ECM fungi. UNITE can be searched by taxon name, via sequence similarity using BLAST n, and via phylogenetic sequence identification using galaxie. Following implementation, galaxie performs a phylogenetic analysis of the query sequence after alignment either to pre-existing generic alignments, or to matches retrieved from a BLAST search on the UNITE data. It should be noted that the current version of UNITE is dedicated to the reliable identification of ECM fungi. The UNITE database is accessible through the URLhttp://unite.zbi.ee.
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