| 1. |
- Bjelic, Sinisa, et al.
(författare)
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Computational design of enone-binding proteins with catalytic activity for the Morita-Baylis-Hillman reaction
- 2013
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Ingår i: ACS Chemical Biology. - : American Chemical Society (ACS). - 1554-8929 .- 1554-8937. ; 8:4, s. 749-757
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Tidskriftsartikel (refereegranskat)abstract
- The Morita-Baylis-Hillman reaction forms a carbon-carbon bond between the α-carbon of a conjugated carbonyl compound and a carbon electrophile. The reaction mechanism involves Michael addition of a nucleophile catalyst at the carbonyl β-carbon, followed by bond formation with the electrophile and catalyst disassociation to release the product. We used Rosetta to design 48 proteins containing active sites predicted to carry out this mechanism, of which two show catalytic activity by mass spectrometry (MS). Substrate labeling measured by MS and site-directed mutagenesis experiments show that the designed active-site residues are responsible for activity, although rate acceleration over background is modest. To characterize the designed proteins, we developed a fluorescence-based screen for intermediate formation in cell lysates, carried out microsecond molecular dynamics simulations, and solved X-ray crystal structures. These data indicate a partially formed active site and suggest several clear avenues for designing more active catalysts.
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| 2. |
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| 3. |
- Liepuoniute, Ieva, et al.
(författare)
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Enhanced Rotation by Ground State Destabilization in Amphidynamic Crystals of a Dipolar 2,3-Difluorophenylene Rotator as Established by Solid State 2H NMR and Dielectric Spectroscopy
- 2020
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Ingår i: The Journal of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 124:28, s. 15391-15398
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Tidskriftsartikel (refereegranskat)abstract
- We report the synthesis and rotational dynamics of the pillared metal–organic framework Zn2(F2BDC)2(DABCO) where F2BDC = 2,3-difluorobenzene-1,4-dicarboxylate acts as a rotating dipolar linker and DABCO = 1,4-diazabicyclo[2.2.2]octane acts as a spacer (F2MOF 1). The pillared structure of F2MOF 1 was confirmed by X-ray diffraction and CP-MAS 13C NMR analyses. Using variable temperature solid state 2H NMR and broadband dielectric spectroscopy, we characterized the rotational dynamics of the dipolar F2BDC linker in the solid state. Variable temperature (VT) quadrupolar echo 2H NMR measurements revealed a rotational activation energy of Ea = 6.8 ± 0.1 kcal/mol, which agreed well with temperature- and frequency-dependent dielectric measurements, indicating a barrier of Ea = 7.1 ± 0.5 kcal/mol. Structural data from single crystal X-ray diffraction and quantum mechanical calculations (DFT) suggest that the rotational potential is determined by steric interactions between the dipolar rotator and the stator linkers such that fluorine atoms in the F2BDC linker reduce the activation energy by destabilization of the coplanar BDC ground state.
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| 4. |
- Xie, Sheng, et al.
(författare)
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1,3-Dipolar Cycloaddition Reactivities of Perfluorinated Aryl Azides with Enamines and Strained Dipolarophiles
- 2015
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Ingår i: Journal of the American Chemical Society. - : American Chemical Society (ACS). - 0002-7863 .- 1520-5126. ; 137:8, s. 2958-2966
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Tidskriftsartikel (refereegranskat)abstract
- The reactivities of enamines and predistorted (strained) dipolarophiles toward perfluoroaryl azides (PFAAs) were explored experimentally and computationally. Kinetic analyses indicate that PFAAs undergo (3 + 2) cycloadditions with enamines up to 4 orders of magnitude faster than phenyl azide reacts with these dipolarophiles. DFT calculations were used to identify the origin of this rate acceleration. Orbital interactions between the cycloaddends are larger due to the relatively low-lying LUMO of PFAAs. The triazolines resulting from PFAAenamine cycloadditions rearrange to amidines at room temperature, while (3 + 2) cycloadditions of enamines and phenyl azide yield stable, isolable triazolines. The 1,3-dipolar cycloadditions of norbornene and DIBAC also show increased reactivity toward PFAAs over phenyl azide but are slower than enamineazide cycloadditions.
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