| 1. |
- Forsman, Lina Davies, et al.
(författare)
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Plasma concentrations of second-line antituberculosis drugs in relation to minimum inhibitory concentrations in multidrug-resistant tuberculosis patients in China : a study protocol of a prospective observational cohort study
- 2018
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Ingår i: BMJ Open. - : BMJ. - 2044-6055. ; 8:9
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Tidskriftsartikel (refereegranskat)abstract
- Individualised treatment through therapeutic drug monitoring (TDM) may improve tuberculosis (TB) treatment outcomes but is not routinely implemented. Prospective clinical studies of drug exposure and minimum inhibitory concentrations (MICs) in multidrug-resistant TB (MDR-TB) are scarce. This translational study aims to characterise the area under the concentration-time curve of individual MDR-TB drugs, divided by the MIC for Mycobacterium tuberculosis isolates, to explore associations with markers of treatment progress and to develop useful strategies for clinical implementation of TDM in MDR-TB.Methods and analysis: Adult patients with pulmonary MDR-TB treated in Xiamen, China, are included. Plasma samples for measure of drug exposure are obtained at 0, 1, 2, 4, 6, 8 and 10 hours after drug intake at week 2 and at 0, 4 and 6 hours during weeks 4 and 8. Sputum samples for evaluating time to culture positivity and MIC determination are collected at days 0, 2 and 7 and at weeks 2, 4, 8 and 12 after treatment initiation. Disease severity are assessed with a clinical scoring tool (TBscore II) and quality of life evaluated using EQ-5D-5L. Drug concentrations of pyrazinamide, ethambutol, levofloxacin, moxifloxacin, cycloserine, prothionamide and para-aminosalicylate are measured by liquid chromatography tandem-mass spectrometry and the levels of amikacin measured by immunoassay. Dried blood spot on filter paper, to facilitate blood sampling for analysis of drug concentrations, is also evaluated. The MICs of the drugs listed above are determined using custom-made broth microdilution plates and MYCOTB plates with Middlebrook 7H9 media. MIC determination of pyrazinamide is performed in BACTEC MGIT 960.Ethics and dissemination: This study has been approved by the ethical review boards of Karolinska Institutet, Sweden and Fudan University, China. Informed written consent is given by participants. The study results will be submitted to a peer-reviewed journal. Trial registration number NCT02816931; Pre-results.
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| 2. |
- Fu, Rao, et al.
(författare)
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First report of Sphenothallus Hall, 1847 from the lower Cambrian of North China
- 2023
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Ingår i: Alcheringa. - 0311-5518 .- 1752-0754. ; , s. 1-9
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Tidskriftsartikel (refereegranskat)abstract
- Sphenothallus is a tubular organism that is one of the most widely distributed and longest-ranging genera through the Palaeozoic. Despite its apparent cosmopolitan distribution, the genus has never been reported from North China. New specimens of Sphenothallus sp. have been discovered in the upper part of the Houjiashan and base of the Mantou formations (early to middle Age 4, Epoch 2, Cambrian) in Jiangsu Province, North China. The specimens are small tubes (up to 5 mm long) and have typical Sphenothallus characteristics, such as a multilayered lamellar structure, and subcircular to elliptical transverse cross-section with a pair of longitudinal thickenings situated at the widest diameter. Our material shows that both the rate of apertural expansion and the curvature of the tubes are significantly larger in early growth stages than in the later growth stages. As the diameter of the aperture increases, the transverse cross-section of the Sphenothallus sp. tube changes from subcircular at the proximal end to elliptical or lenticular at the distal end, and its wall thickness changes from uniform to thickening longitudinally. The discovery of Sphenothallus sp. from the North China Platform represents an extension of its palaeogeographic range during the Cambrian.
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| 3. |
- Hu, Yazhou, et al.
(författare)
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Burrows filled with faecal pellets from the Cambrian (Stage 4) Guanshan biota of South China and their palaeoecological implications
- 2021
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Ingår i: Palaeogeography, Palaeoclimatology, Palaeoecology. - : Elsevier. - 0031-0182 .- 1872-616X. ; 567
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Tidskriftsartikel (refereegranskat)abstract
- Recent excavations of the Guanshan biota at the Shijiangjun section in the eastern Yunnan Province, South China, have revealed many well-defined faecal pellets and related trace fossils. These can be assigned to three morphotypes, which have affinities with the ichnogenera Tomaculum, Alcyonidiopsis and Tubulichnium. Morphotype 1 is an unbranched burrow filled with randomly distributed faecal pellets. Morphotype 2 is a string-shaped burrow without branching, containing intensely compacted faecal pellets. Morphotype 3 comprises unbranched burrows with a fill of faecal pellets and a central cavity. The ellipsoidal faecal pellets in morphotype 1 and 2 can be assigned to Coprulus oblongus. They are morphologically similar to the excrements produced by modern deposit-feeding polychaetes, as well as the gut content of early Cambrian polychaete worms (Guanshanchaeta felicia) from the Guanshan biota and priapulid worms (Selkirkia) from the Xiaoshiba Lagerstätte. This analogy suggests polychaetes and priapulid worms as potential producers of these burrows and that a diverse range of digestive methods had already been established in the Cambrian Stage 4 ca. 510 Ma ago. Morphotype 3 is interpreted to be related to the storage of faecal pellets and possibly for cultivation of bacteria, which would represent an early case of this behaviour. The discovery of this diverse suite of burrows with faecal pellets indicates that the origin of diverse deposit-feeding strategies in worms can be traced back to at least the Cambrian Stage 4.
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| 4. |
- Hu, Yazhou, et al.
(författare)
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Distinguishing borings and burrows in intraclasts : Evidence from the Cambrian (Furongian) of North China
- 2023
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Ingår i: Sedimentary Geology. - : Elsevier. - 0037-0738 .- 1879-0968. ; 443
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Tidskriftsartikel (refereegranskat)abstract
- Hardgrounds represent synsedimentary cemented stratigraphic beds that form at or near the seafloor. Borings represent a key line of evidence for investigations of hardground development and record the evolution of bioerosion and boring organisms. The unequivocal identification of borings is done through identification of the crosscutting relationship between the proposed boring and a hard substrate, such as lithoclasts and/or shells, with morphological criteria able to be used when dealing with a homogeneous substrate, such as micritic hardgrounds. Bioeroded hardgrounds and burrows with a micrite halo/lining are subject to fracturing and reworking, resulting in accumulations of intraclasts in flat-pebble conglomerates (FPC). The recognition of borings and broken burrows with a halo can be challenging in FPC. Using trace fossils preserved in situ and in FPC from late Cambrian carbonates of North China, we establish a set of criteria for distinguishing borings from burrows with a halo in FPC. Features such as the relative volume of burrows and borings versus the host pebble and the number of traces per pebble, the cross-cutting relationship with different colored laminae, and the presence of pyrite or glauconite encrustations can all be invoked to aid recognition of borings. Examination of the cross-cutting relationship and encrustation of trace fossils are not sufficient on their own. Our results suggest caution is necessary in defining borings in FPC, particularly as synsedimentary deformation of burrows with a halo in late Cambrian FPC can create structures that resemble borings.
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| 5. |
- Hu, Yazhou, et al.
(författare)
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First Report of Small Shelly Fossils from the Cambrian Miaolingian Limestones (Zhangxia and Hsuzhuang Formations) in Yiyang County, Henan Province of North China
- 2021
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Ingår i: Minerals. - : MDPI. - 2075-163X. ; 11:10
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Tidskriftsartikel (refereegranskat)abstract
- Small Shelly Fossils (SSFs) from the Cambrian are widely distributed and well known across different paleocontinents of the world. However, middle Cambrian SSFs from North China Platform have only rarely been documented until now. In this paper, we presented the first report on SSFs from bioclastic and oolitic limestones of the Zhangxia and Hsuzhuang formations of Henan province, North China. The carbonate-hosted fauna includes brachiopods (Micromitra sp., M. modesta, Eoobolus sp., and Schizopholis sp.), helcionellids (Oelandiellaaccordionata and O. aliciae), hyolithids, Hyolithellus sp., Chancelloriaeros, sponge spicules, echinoderm ossicles, and chancelloriid sclerites. In terms of preservation, the brachiopod shell valves of M. modesta appeared to be homogeneous, consisting of tightly packed phosphate grains. Eoobolus sp. is composed of primary layer and secondary baculate, both of which consist of tightly compacted phosphate grains. Schizopholis sp. has multiple-lamellar phosphatized microstructures that distinctly differ from the other brachiopods recovered from the Longwanggou section. A similar multiple-lamellar microstructure was also revealed in conchs of Hyolithellus, with tightly compacted phosphate grains. The argillaceous shell of Oelandiellaaccordionata and O. aliciae, and the calcitic inner molds of hyolith did not preserve any shell structure. The helcionellids O. accordionata and O. aliciae and the brachiopod M. modesta were reported for the first time from North China. The fauna is most similar to the middle Cambrian faunas of South Australia, in the brachiopod and mollusk components; it is also similar in composition of brachiopods and mollusks to coeval faunas from South China. The new fauna of SSFs in the Yiyang Longwanggou Section indicated that the Hsuzhuang and Zhangxia formations are late Drumian to middle Guzhuangian in age, most likely correlating with the Murrawong Creek Formation of South Australia.
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| 6. |
- Liang, Yue, et al.
(författare)
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Evolutionary contingency in lingulid brachiopods across mass extinctions
- 2023
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Ingår i: Current Biology. - : Elsevier BV. - 0960-9822 .- 1879-0445. ; 33:8, s. 1565-1572.e3
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Tidskriftsartikel (refereegranskat)abstract
- Morphology usually serves as an effective proxy for functional ecology,1,2,3,4,5 and evaluating morphological, anatomical, and ecological changes permits a deeper understanding of the nature of diversification and macroevolution.5,6,7,8,9,10,11,12 Lingulid (order Lingulida) brachiopods are both diverse and abundant during the early Palaeozoic but decrease in diversity over time, with only a few genera of linguloids and discinoids present in modern marine ecosystems, resulting in them frequently being referred to as “living fossils.”13,14,15 The dynamics that drove this decline remain uncertain, and it has not been determined if there is an associated decline in morphological and ecological diversity. Here, we apply geometric morphometrics to reconstruct global morphospace occupation for lingulid brachiopods through the Phanerozoic, with results showing that maximum morphospace occupation was reached by the Early Ordovician. At this time of peak diversity, linguloids with a sub-rectangular shell shape already possessed several evolutionary features, such as the rearrangement of mantle canals and reduction of the pseudointerarea, common to all modern infaunal forms. The end Ordovician mass extinction has a differential effect on linguloids, disproportionally wiping out those forms with a rounded shell shape, while forms with sub-rectangular shells survived both the end Ordovician and the Permian-Triassic mass extinctions, leaving a fauna predominantly composed of infaunal forms. For discinoids, both morphospace occupation and epibenthic life strategies remain consistent through the Phanerozoic. Morphospace occupation over time, when considered using anatomical and ecological analyses, suggests that the limited morphological and ecological diversity of modern lingulid brachiopods reflects evolutionary contingency rather than deterministic processes.
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| 7. |
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| 8. |
- Liang, Yue, et al.
(författare)
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Late Ordovician lingulid brachiopods from the Pingliang Formation (Shaanxi Province, North China) : Morphological and ecological implications
- 2024
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Ingår i: Journal of Asian Earth Sciences. - : Elsevier. - 1367-9120 .- 1878-5786. ; 263
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Tidskriftsartikel (refereegranskat)abstract
- Brachiopods first appeared in the early Cambrian and persist till present. They are one of the main lineages of marine invertebrates that diversified throughout the Paleozoic and reached their maximum diversity of high-rank taxonomy during the Ordovician. During this time interval, brachiopods were mainly dominated by the articulated Orthida and Strophomenida, which represent major components of the Paleozoic Evolutionary Fauna; however, the inarticulated lingulid brachiopods (Order Lingulida) were comparatively less abundant and received less attention during this time period. Here, we report a new record of the lingulid brachiopod Anomaloglossa porca from the Upper Ordovician (Sandbian) Pingliang Formation of the Xilinggou Section, Shaanxi Province, North China. Collected specimens are preserved as calcium phosphatic shells with highly mineralization which preserve detailed morphology and shell ornamentation of both ventral and dorsal valves. The new occurrence of A. porca extends its paleogeographic distribution from Gondwana and Tarim to North China Platform. Moreover, comprehensive geometric morphometric analysis of A. porca is performed and the results indicate that both the shell shape and pseudointerarea are very close to the recent infaunal lingulids. If interpreted correctly, the fossils represent the first example of infaunal lifestyles achieved by Ordovician lingulids from North China, exhibiting the ecological complexities of the Late Ordovician benthos composed of epibenthos and infaunas as well.
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| 9. |
- Liang, Yue, et al.
(författare)
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When lingulid brachiopods became infaunal(?) : Perspectives from the morphological and anatomical information
- 2023
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Ingår i: Estonian journal of earth sciences. - : Estonian Academy Publishers. - 1736-4728 .- 1736-7557. ; 72:1, s. 140-140
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Tidskriftsartikel (refereegranskat)abstract
- Morphology usually serves as an effective proxy for functional ecology, and the evaluation of morphological, anatomical, and ecological changes allows for a deeper understanding of the nature of diversification and macroevolution. Lingulid (Order Lingulida) brachiopods were diverse and abundant during the early Palaeozoic, but decreased in diversity over time, with only a few genera of linguloids and discinoids present in modern marine ecosystems, frequently referred to as 'living fossils'. The dynamics that drove this decline remain unclear and it has not been determined if there is an associated decline in morphological and ecological diversity. We applied geometric morphometrics to reconstruct global morphospace occupied by lingulid brachiopods through the Phanerozoic, with results showing that maximum morphospace occupation was reached in the Early Ordovician. At this time of peak diversity, linguloids with sub-rectangular shells already possessed several evolutionary features common to all modern infaunal forms such as the rearrangement of mantle canals and reduction of the pseudointerarea. The endOrdovician mass extinction had a differential effect on linguloids, disproportionally wiping out those with rounded shells whilst forms with sub-rectangular shells survived both the endOrdovician and the Permian-Triassic mass extinctions, with post-extinction faunas predomi nantly composed of infaunal forms. For discinoids, both morphospace occupation and epi-benthic life strategies remain consistent through the Phanerozoic. Analysis of the morphospace occupation of lingulids over time, taking into account their body size, anatomical features and ecological changes, suggests that the reduced morphological and ecological diversity observed in modern lingulid brachiopods reflects evolutionary contingency rather than deterministic processes.
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| 10. |
- Luo, Mei, et al.
(författare)
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First Report of Small Skeletal Fossils from the Upper Guojiaba Formation (Series 2, Cambrian), Southern Shaanxi, South China
- 2023
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Ingår i: Biology. - : MDPI. - 2079-7737. ; 12:7
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Tidskriftsartikel (refereegranskat)abstract
- A small skeletal fossil assemblage is described for the first time from the bioclastic limestone interbeds of the siltstone-dominated Guojiaba Formation, southern Shaanxi, China. The carbonate-hosted fossils include brachiopods (Eohadrotreta zhujiahensis, Eohadrotreta zhenbaensis, Spinobolus sp., Kuangshanotreta malungensis, Kyrshabaktella sp., Lingulellotreta yuanshanensis, Eoobolus incipiens, and Eoobolus sp.), sphenothallids (Sphenothallus sp.), archaeocyaths (Robustocyathus sp. and Yukonocyathus sp.), bradoriids (Kunmingella douvillei), chancelloriids sclerites (Onychia sp., Allonnia sp., Diminia sp., Archiasterella pentactina, and Chancelloria cf. eros), echinoderm plates, fragments of trilobites (Eoredlichia sp.), and hyolithelminths. The discovery of archaeocyaths in the Guojiaba Formation significantly extends their stratigraphic range in South China from the early Tsanglangpuian at least to the late Chiungchussuan. Thus, the Guojiaba Formation now represents the lowest known stratigraphic horizon where archaeocyath fossils have been found in the southern Shaanxi area. The overall assemblage is most comparable, in terms of composition, to Small skeletal fossil (SSF) assemblages from the early Cambrian Chengjiang fauna recovered from the Yu’anshan Formation in eastern Yunnan Province. The existing position that the Guojiaba Formation is correlated with Stage 3 in Cambrian Series 2 is strongly upheld based on the fossil assemblage recovered in this study.Simple SummarySmall skeletal fossils are reported for the first time from the early Cambrian Guojiaba Formation, southern Shaanxi, China. All specimens were recovered from bioclastic limestone interbeds and encompass a wide variety of skeletal clades, including brachiopods, sphenothallids, archaeocyaths, bradoriids, sponge spicules, echinoderm plates, and trilobite spines. The archaeocyaths described herein are considerably older than those described from the Xiannvdong Formation, which was previously assumed to contain the lowest archaeocyath-bearing horizons in South China. The brachiopod Lingulellotreta yuanshanensis is recorded for the first time from the Fucheng area, with previous records confined mainly to the Chengjiang Fauna-bearing Yu’anshan Formation in the lower Cambrian, the eastern Yunnan Province. Micro-morphological and elemental analyses of the small skeletal fossil assemblages were carried out using SEM, BSEM, and Micro X–ray fluorescence. The skeletal fauna in the Guojiaba Formation resembles the assemblages recovered from the upper Yu’anshan Formation (Chengjiang Fauna) in eastern Yunnan Province. Based on the recovered assemblage, the biostratigraphic age of the Guojiaba Formation correlates with the Chiungchussuan Stage (Stage 3 of Cambrian Series 2).
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