| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
- Bidermane, Ieva, 1984-, et al.
(författare)
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Atomic Contributions to the Valence Band Photoelectron Spectra of Metal-free, Iron and Manganese Phthalocyanines
- 2015
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Ingår i: Journal of Electron Spectroscopy and Related Phenomena. - : Elsevier BV. - 0368-2048 .- 1873-2526. ; 205, s. 92-97
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Forskningsöversikt (övrigt vetenskapligt/konstnärligt)abstract
- The present work reports a photoelectron spectroscopy study of the low-energy region of the valence band of metal-free phthalocyanine (H2Pc) compared with those of iron phthalocyanine (FePc) and manganese phthalocyanine (MnPc). We have analysed in detail the atomic orbital composition of the valence band both experimentally, by making use of the variation in photoionization cross-sections with photon energy, and theoretically, by means of density functional theory. The atomic character of the Highest Occupied Molecular Orbital (HOMO), reflected on the outermost valence band binding energy region, is different for MnPc as compared to the other two molecules. The peaks related to the C 2p contributions, result in the HOMO for H2Pc and FePc and in the HOMO-1 for MnPc as described by the theoretical predictions, in very good agreement with the experimental results. The DFT simulations, discerning the atomic contribution to the density of states, indicate how the central metal atom interacts with the C and N atoms of the molecule, giving rise to different partial and total density of states for these three Pc molecules.
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| 3. |
- Bidermane, Ieva, 1984-, et al.
(författare)
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Characterization of Gas Phase of Iron Phthalocyanine with X-ray Photoelectron and Absorption Spectroscopies
- 2015
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Ingår i: Physica status solidi. B, Basic research. - : Wiley. - 0370-1972 .- 1521-3951. ; 252:6, s. 1259-1265
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Tidskriftsartikel (refereegranskat)abstract
- Despite the numerous studies dedicated to phthalocyanine molecules adsorbed on surfaces, in monolayer or thin film, very few works have been focused on the characterization of vapors of these molecules. In this article we present the C 1s, N 1s and Fe 2p photoemission results as well as N K-edge X-ray absorption data of iron phthalocyanine (FePc) in gas phase. Presented comparison of X-ray photoelectron spectroscopy and X-ray absorption spectroscopy spectra of FePc films show a great similarity with the gas phase results, confirming the molecular character of thick films. The Fe2p photoemission spectrum of the gas phase FePc, shown for the first time, can be considered as a fingerprint of the Fe(II) ionic state of the central metal of the iron phthalocyanine. The performed multiplet calculations for describing the Fe 2p XP spectrum indicate 3Eg (a1g2eg32g1) state as the most probable ground state for thick film of iron phthalocyanine.
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| 4. |
- Deshapriya, Jasinghege Don Prasanna, et al.
(författare)
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Clustering the properties of near-Earth objects : physico-dynamical links among NEOs
- 2023
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Ingår i: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 674
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Tidskriftsartikel (refereegranskat)abstract
- Context. At present, near-Earth objects (NEOs) are being discovered at an ever-increasing rate. However, their physical characterisation is still significantly lagging behind. In particular, the taxonomic classification of newly discovered NEOs is of great importance with regard to improving our understanding of the population of NEOs.Aims. In this context, our goal is to probe potential links between orbital properties of NEOs and their composition. We investigate whether we can make a reasonable guess about the taxonomic class of an NEO upon its discovery with a decent orbital accuracy.Methods. We used a G-mode multivariate statistical clustering method to find homogeneous clusters in a dataset composed of orbital elements of NEOs. We adopted two approaches, using two sets of variables as inputs to the G-mode method. In each approach, we analysed the available taxonomic distribution of resulting clusters to find potential correlations with several unique parameters that distinctively characterise NEOs. We then applied a dynamical model on the same clusters to trace their escape regions.Results. Approach 1 (A1) led us to obtain NEO clusters that can be linked to a primitive composition. This result was further strengthened by the dynamical model, which mapped outer-belt sources as escape regions for these clusters. We remark on the finding of a cluster akin to S-type NEOs in highly eccentric orbits during the same approach (A1). Two clusters, one with small NEOs in terrestriallike orbits and one with relatively high inclinations, were found to be common to both approaches. Approach 2 (A2) revealed three clusters that are only separable by their arguments of perihelion. Taken altogether, they make up the majority of known Atira asteroids.Conclusions. For an NEO whose orbit is relatively well determined, we propose a model to determine whether the taxonomy of an NEO is siliceous or primitive if the orbital elements of the NEO fall within the presented combinations of inclination, eccentricity, and semi-major axis ranges.
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| 5. |
- Li, Jian-Yang, et al.
(författare)
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Ejecta from the DART-produced active asteroid Dimorphos
- 2023
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Ingår i: Nature. - : Springer Nature. - 0028-0836 .- 1476-4687. ; 616, s. 452-456
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Tidskriftsartikel (refereegranskat)abstract
- Some active asteroids have been proposed to be formed as a result of impact events1. Because active asteroids are generally discovered by chance only after their tails have fully formed, the process of how impact ejecta evolve into a tail has, to our knowledge, not been directly observed. The Double Asteroid Redirection Test (DART) mission of NASA2, in addition to having successfully changed the orbital period of Dimorphos3, demonstrated the activation process of an asteroid resulting from an impact under precisely known conditions. Here we report the observations of the DART impact ejecta with the Hubble Space Telescope from impact time T + 15 min to T + 18.5 days at spatial resolutions of around 2.1 km per pixel. Our observations reveal the complex evolution of the ejecta, which are first dominated by the gravitational interaction between the Didymos binary system and the ejected dust and subsequently by solar radiation pressure. The lowest-speed ejecta dispersed through a sustained tail that had a consistent morphology with previously observed asteroid tails thought to be produced by an impact4,5. The evolution of the ejecta after the controlled impact experiment of DART thus provides a framework for understanding the fundamental mechanisms that act on asteroids disrupted by a natural impact1,6.
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| 6. |
- Roberta, Totani, et al.
(författare)
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Electronic structure investigations of biphenylene films
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Tidskriftsartikel (refereegranskat)abstract
- Photoelectron Spectroscopy (PES) and Near-Edge X-ray Absorption Fine Structure (NEXAFS) spectroscopy have been used to investigate the occupied and empty density of states of biphenylene films of different thicknesses, deposited onto a Cu(111) crystal. The obtained results have been compared to previous gas phase spectra and single molecule density functional theory (DFT) calculations to get insights into the possible modification of the molecular electronic structure in the film induced by the adsorption on a surface. Furthermore, NEXAFS measurements allowed characterizing the variation of the molecular arrangement with the film thickness and helped to clarify the substrate- molecule interaction.
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| 7. |
- Teng, Zhang, et al.
(författare)
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Exploring the electronic structure of CoPc by photoemission and absorption spectroscopy
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- Photoelectron spectroscopy and X-ray absorption spectroscopy were used to investigate the occupied and empty density of states of cobalt phthalocyanine (CoPc) in the gas phase and in thin films of different thicknesses, deposited onto a Au (111) single crystal. The comparison between experimental gas phase results and density functional theory single molecule simulations confirmed that the CoPc ground state is correctly described by the 2A1g electronic configuration. Moreover, the atomic character of the highest occupied molecular orbital of CoPc was addressed by performing photon energy dependent valence photoemission spectroscopy experiments on both CoPc gas phase and film samples. Our results clearly show that the highest occupied molecular orbital is derived only from the organic ligand, with mainly contribution from the carbon atoms. Multiplet ligand field theory was employed to simulate the Co L edge X-ray absorption spectroscopy results.
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