| 1. |
- Allard, Christina, et al.
(författare)
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Rasbiologiskt språkbruk i statens rättsprocess mot sameby : DN Debatt 2015-06-11
- 2015
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Annan publikation (populärvet., debatt m.m.)abstract
- Statens hantering av forskningsresultat i rättsprocessen med Girjas sameby utgör ett hot mot Sverige som rättsstat och kunskapsnation. Åratal av svensk och internationell forskning underkänns och man använder ett språkbruk som skulle kunna vara hämtat från rasbiologins tid. Nu måste staten ta sitt ansvar och börja agera som en demokratisk rättsstat, skriver 59 forskare.
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| 2. |
- Öberg, Rasmus, et al.
(författare)
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UV-induced spectral and morphological changes in bacterial spores for inactivation assessment
- 2024
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Ingår i: Journal of Physical Chemistry B. - : American Chemical Society (ACS). - 1520-6106 .- 1520-5207. ; 128:7, s. 1638-1646
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Tidskriftsartikel (refereegranskat)abstract
- The ability to detect and inactivate spore-forming bacteria is of significance within, for example, industrial, healthcare, and defense sectors. Not only are stringent protocols necessary for the inactivation of spores but robust procedures are also required to detect viable spores after an inactivation assay to evaluate the procedure’s success. UV radiation is a standard procedure to inactivate spores. However, there is limited understanding regarding its impact on spores’ spectral and morphological characteristics. A further insight into these UV-induced changes can significantly improve the design of spore decontamination procedures and verification assays. This work investigates the spectral and morphological changes to Bacillus thuringiensis spores after UV exposure. Using absorbance and fluorescence spectroscopy, we observe an exponential decay in the spectral intensity of amino acids and protein structures, as well as a logistic increase in dimerized DPA with increased UV exposure on bulk spore suspensions. Additionally, using micro-Raman spectroscopy, we observe DPA release and protein degradation with increased UV exposure. More specifically, the protein backbone’s 1600–1700 cm–1 amide I band decays slower than other amino acid-based structures. Last, using electron microscopy and light scattering measurements, we observe shriveling of the spore bodies with increased UV radiation, alongside the leaking of core content and disruption of proteinaceous coat and exosporium layers. Overall, this work utilized spectroscopy and electron microscopy techniques to gain new understanding of UV-induced spore inactivation relating to spore degradation and CaDPA release. The study also identified spectroscopic indicators that can be used to determine spore viability after inactivation. These findings have practical applications in the development of new spore decontamination and inactivation validation methods.
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| 3. |
- Abildgaard, Amanda B., et al.
(författare)
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HSP70-binding motifs function as protein quality control degrons
- 2023
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Ingår i: Cellular and Molecular Life Sciences (CMLS). - : Springer Science and Business Media LLC. - 1420-682X .- 1420-9071. ; 80:1
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Tidskriftsartikel (refereegranskat)abstract
- Protein quality control (PQC) degrons are short protein segments that target misfolded proteins for proteasomal degradation, and thus protect cells against the accumulation of potentially toxic non-native proteins. Studies have shown that PQC degrons are hydrophobic and rarely contain negatively charged residues, features which are shared with chaperone-binding regions. Here we explore the notion that chaperone-binding regions may function as PQC degrons. When directly tested, we found that a canonical Hsp70-binding motif (the APPY peptide) functioned as a dose-dependent PQC degron both in yeast and in human cells. In yeast, Hsp70, Hsp110, Fes1, and the E3 Ubr1 target the APPY degron. Screening revealed that the sequence space within the chaperone-binding region of APPY that is compatible with degron function is vast. We find that the number of exposed Hsp70-binding sites in the yeast proteome correlates with a reduced protein abundance and half-life. Our results suggest that when protein folding fails, chaperone-binding sites may operate as PQC degrons, and that the sequence properties leading to PQC-linked degradation therefore overlap with those of chaperone binding.
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| 4. |
- Alänge, Sverker, 1951, et al.
(författare)
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ISO 9000: Erfarenheter från certifierade företag
- 1993
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- Idag har många svenska företag fått ISO 9000-certifikat genom tredjeparts bedömning, antingen via SIS, Norsk Veritas, Lloyd's eller British Standard Institute. De flesta företagen har antingen certifierats enligt ISO 9001 eller ISO 9002. I september 1992 hade 34 företag certifierats genom Norsk Veritas och det fanns 72 certifierade företag på SIS lista.Det finns dock många olika synpunkter angående värdet av en certifiering. Vissa anser att den är grundläggande för ett gott kvalitetsarbete och andra anser att det verkar vara en krånglig pappersexercis utan större inverkan på kvalitetsresultatet. Juran väckte en del uppståndelse och eftertanke när han 1989 sa "Se gärna till att uppfylla ISO 9000 men låt det inte störa kvalitetsarbetet".Denna rapport baseras på en undersökning för att ta reda på hur det verkligen förhåller sig i svenska företag. Den är utförd av teknologer som deltagit i en kurs i "Industriell kvalitetsteknik" vid Chalmers tekniska högskola. Var och en av teknologerna har haft som uppgift att ta kontakt med ett svenskt företag som certifierats enligt ISO 9001 eller ISO 9002. Uppgiften gällde att undersöka vilka positiva och negativa erfarenheter de certifierade företagen har av certifieringsprocessen och vilka resultat de uppnått internt och externt på grund av ISO 9000.Teknologerna delades in i grupper om 5-7 personer där var och en ringde ett företag under november-december 1992. Därefter sammanställde varje grupp en liten rapport baserad på 5-7 intervjuer. De analyserade de viktigaste positiva och negativa synpunkterna från dessa intervjuer. De undersökte om det fanns något gemensamt i svaren, eller om företagen hade olika erfarenheter och då försökte de komma fram till vad detta kunde bero på.Genom den egna direkta kontakten med ett företag och den gruppvisa diskussionen och författandet av en rapport har teknologerna kunna skaffa sig egna kunskaper om ISO 9000. I storgrupp presenterade därefter de olika smågrupperna sina rapporter och diskuterade resultaten. Baserat på denna diskussion, smågruppsrapporterna och ifyllda intervjuformulär har därefter tre teknologer sammanställt resultatet till föreliggande rapport.
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| 5. |
- Andersson, Kent, 1967-, et al.
(författare)
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Introduktion till Operationsanalys : En antologi med essäer av studerande i militärteknik 2011
- 2012
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- I ämnesplanen definieras militärteknik som ”den vetenskap som beskriver och förklarar hur tekniken inverkar på militär verksamhet på alla nivåer, strategisk, operativ och taktisk, samt hur officersprofessionen påverkar och påverkas av tekniken.”[1] En militärteknikers uppgift brukar, utgående från definitionen, uttryckas som att beskriva och förklara den militära nyttan med tekniken. För att kunna göra detta behövs verktyg. Och många av dem kommer från den vetenskapliga disciplinen Operationsanalys.Syftet med den här antologin är att introducera studerande i militärteknik på Försvarshögskolan till två av de mest refererade boktitlarna i operationsanalys – Methods for conducting military operational analysis editerad av Andrew G. Loerch och Larry B. Rainey samt Military Operations Research, quantitative decision making av N.K. Jaiswal.Kapitlen utgörs av essäer skrivna av studerande på den högre stabsofficersutbildningen med teknisk inriktning, som examinationsuppgift i en fördjupningskurs. Essäerna är till del referat av kapitel i de två böckerna ovan, men kryddade med exempel satta i svenskt sammanhang och med de studerandes egen värdering av metodernas användbarhet.[1]Försvarshögskolan, Ämnesplan militärteknik, 2007.
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| 6. |
- Andersson, Rasmus, 1990, et al.
(författare)
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CHAMPION: Chalmers hierarchical atomic, molecular, polymeric and ionic analysis toolkit
- 2021
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Ingår i: Journal of Computational Chemistry. - : Wiley. - 0192-8651 .- 1096-987X. ; 42:23, s. 1632-1642
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Tidskriftsartikel (refereegranskat)abstract
- We present CHAMPION (Chalmers hierarchical atomic, molecular, polymeric, and ionic analysis toolkit): a software developed to automatically detect time-dependent bonds between atoms based on their dynamics, classify the local graph topology around them, and analyze the physicochemical properties of these topologies by statistical physics. In stark contrast to methodologies where bonds are detected based on static conditions such as cut-off distances, CHAMPION considers pairs of atoms to be bound only if they move together and act as a bound pair over time. Furthermore, the time-dependent global bond graph is possible to split into dynamically shifting connected components or subgraphs around a certain chemical motif and thereby allow the physicochemical properties of each such topology to be analyzed by statistical physics. Applicable to condensed matter and liquids in general, and electrolytes in particular, this allows both quantitative and qualitative descriptions of local structure, as well as dynamical processes such as speciation and diffusion. We present here a detailed overview of CHAMPION, including its underlying methodology, implementation, and capabilities.
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| 7. |
- Andersson, Rasmus, 1990, et al.
(författare)
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Dynamic Structure Discovery Applied to the Ion Transport in the Ubiquitous Lithium-ion Battery Electrolyte LP30
- 2022
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Ingår i: Journal of the Electrochemical Society. - : The Electrochemical Society. - 1945-7111 .- 0013-4651. ; 169:10
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Tidskriftsartikel (refereegranskat)abstract
- The electrolytes of the today omnipresent lithium-ion batteries (LIBs) have for more than 25 years been based upon 1 M LiPF6 in a 50:50 EC:DMC mixture-commonly known as LP30. The success of the basic design of the LP30 electrolyte, with many variations and additions made over the years, is unchallenged. Yet, some molecular level fundamentals of LP30 are surprisingly elusive: the structure of the first solvation shell of the Li+ cation is still a topic of current debate; the details of the dynamics are not fully understood; the interpretation of structural and dynamic properties is highly dependent on the analysis methods used; the contributions by different species to the ion transport and the energetics involved are not established. We here apply dynamic structure discovery analysis as implemented in CHAMPION to molecular dynamics simulation trajectories to bring new light on the structure and dynamics within LP30 and especially the (Li+) ion transport to rationalize further development of LIB electrolytes.
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| 8. |
- Andersson, Rasmus, 1990, et al.
(författare)
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Ion Transport Mechanisms via Time-Dependent Local Structure and Dynamics in Highly Concentrated Electrolytes
- 2020
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Ingår i: Journal of the Electrochemical Society. - : The Electrochemical Society. - 1945-7111 .- 0013-4651. ; 167:14
-
Tidskriftsartikel (refereegranskat)abstract
- Highly concentrated electrolytes (HCEs) are attracting interest as safer and more stable alternatives to current lithium-ion battery electrolytes, but their structure, solvation dynamics and ion transport mechanisms are arguably more complex. We here present a novel general method for analyzing both the structure and the dynamics, and ultimately the ion transport mechanism(s), of electrolytes including HCEs. This is based on automated detection of bonds, both covalent and coordination bonds, including how they dynamically change, in molecular dynamics (MD) simulation trajectories. We thereafter classify distinct local structures by their bond topology and characterize their physicochemical properties by statistical mechanics, giving both a qualitative and quantitative description of the structure, solvation and coordination dynamics, and ion transport mechanism(s). We demonstrate the method by in detail analyzing an ab initio MD simulation trajectory of an HCE consisting of the LiTFSI salt dissolved in acetonitrile at a 1:2 molar ratio. We find this electrolyte to form a flexible percolating network which limits vehicular ion transport but enables the Li+ ions to move between different TFSI coordination sites along with their first solvation shells. In contrast, the TFSI anions are immobilized in the network, but often free to rotate which further facilitates the Li+ hopping mechanism.Highly concentrated electrolytes (HCEs) are attracting interest as safer and more stable alternatives to current lithium-ion battery electrolytes, but their structure, solvation dynamics and ion transport mechanisms are arguably more complex. We here present a novel general method for analyzing both the structure and the dynamics, and ultimately the ion transport mechanism(s), of electrolytes including HCEs. This is based on automated detection of bonds, both covalent and coordination bonds, including how they dynamically change, in molecular dynamics (MD) simulation trajectories. We thereafter classify distinct local structures by their bond topology and characterize their physicochemical properties by statistical mechanics, giving both a qualitative and quantitative description of the structure, solvation and coordination dynamics, and ion transport mechanism(s). We demonstrate the method by in detail analyzing an ab initio MD simulation trajectory of an HCE consisting of the LiTFSI salt dissolved in acetonitrile at a 1:2 molar ratio. We find this electrolyte to form a flexible percolating network which limits vehicular ion transport but enables the Li+ ions to move between different TFSI coordination sites along with their first solvation shells. In contrast, the TFSI anions are immobilized in the network, but often free to rotate which further facilitates the Li+ hopping mechanism. Highly concentrated electrolytes (HCEs) are attracting interest as safer and more stable alternatives to current lithium-ion battery electrolytes, but their structure, solvation dynamics and ion transport mechanisms are arguably more complex. We here present a novel general method for analyzing both the structure and the dynamics, and ultimately the ion transport mechanism(s), of electrolytes including HCEs. This is based on automated detection of bonds, both covalent and coordination bonds, including how they dynamically change, in molecular dynamics (MD) simulation trajectories. We thereafter classify distinct local structures by their bond topology and characterize their physicochemical properties by statistical mechanics, giving both a qualitative and quantitative description of the structure, solvation and coordination dynamics, and ion transport mechanism(s). We demonstrate the method by in detail analyzing an ab initio MD simulation trajectory of an HCE consisting of the LiTFSI salt dissolved in acetonitrile at a 1:2 molar ratio. We find this electrolyte to form a flexible percolating network which limits vehicular ion transport but enables the Li+ ions to move between different TFSI coordination sites along with their first solvation shells. In contrast, the TFSI anions are immobilized in the network, but often free to rotate which further facilitates the Li+ hopping mechanism.
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| 9. |
- Beske, Rasmus Paulin, et al.
(författare)
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The Effect of Targeted Temperature Management on the Metabolome Following Out-of-Hospital Cardiac Arrest
- 2023
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Ingår i: Therapeutic hypothermia and temperature management. - 2153-7658. ; 13:4, s. 208-215
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Tidskriftsartikel (refereegranskat)abstract
- Targeted temperature management (TTM) may moderate the injury from out-of-hospital cardiac arrest. Slowing the metabolism has been a suggested effect. Nevertheless, studies have found higher lactate levels in patients cooled to 33°C compared with 36°C even days from TTM cessation. Larger studies have not been performed on the TTM's effect on the metabolome. Accordingly, to explore the effect of TTM, we used ultra-performance liquid-mass spectrometry in a substudy of 146 patients randomized in the TTM trial to either 33°C or 36°C for 24 hours and quantified 60 circulating metabolites at the time of hospital arrival (T0) and 48 hours later (T48). From T0 to T48, profound changes to the metabolome were observed: tricarboxylic acid (TCA) cycle metabolites, amino acids, uric acid, and carnitine species all decreased. TTM significantly modified these changes in nine metabolites (Benjamini-Hochberg corrected false discovery rate <0.05): branched amino acids valine and leucine levels dropped more in the 33°C arm (change [95% confidence interval]: −60.9μM [−70.8 to −50.9] vs. −36.0μM [−45.8 to −26.3] and −35.5μM [−43.1 to −27.8] vs. −21.2μM [−28.7 to −13.6], respectively), whereas the TCA metabolites including malic acid and 2-oxoglutaric acid remained higher for the first 48 hours (−7.7μM [−9.7 to −5.7] vs. −10.4μM [−12.4 to −8.4] and −3μM [−4.3 to −1.7] vs. −3.7μM [−5 to −2.3]). Prostaglandin E2 only dropped in the TTM 36°C group. The results show that TTM affects the metabolism hours after normothermia have been reached.
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| 10. |
- Bishop, Kevin, et al.
(författare)
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The Effects of Forestry on Hg Bioaccumulation in Nemoral/Boreal Waters and Recommendations for Good Silvicultural Practice
- 2009
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Ingår i: Ambio. - : Royal Swedish Academy of Sciences. - 0044-7447 .- 1654-7209. ; 38:7, s. 373-380
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Tidskriftsartikel (refereegranskat)abstract
- Mercury (Hg) levels are alarmingly high in fish from lakes across Fennoscandia and northern North America. The few published studies on the ways in which silviculture practices influence this problem indicate that forest operations increase Hg in downstream aquatic ecosystems. From these studies, we estimate that between one-tenth and one-quarter of the Hg in the fish of high-latitude, managed forest landscapes can be attributed to harvesting. Forestry, however, did not create the elevated Hg levels in the soils, and waterborne Hg/MeHg concentrations downstream from harvested areas are similar to those from wetlands. Given the current understanding of the way in which silviculture impacts Hg cycling, most of the recommendations for good forest practice in Sweden appear to be appropriate for high-latitude regions, e.g., leaving riparian buffer zones, as well as reducing disturbance at stream crossings and in moist areas. The recommendation to restore wetlands and reduce drainage, however, will likely increase Hg/MeHg loadings to aquatic ecosystems
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