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Sökning: WFRF:(Jonsson Jakob)

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2.
  • Mortensen, Jens Jorgen, et al. (författare)
  • GPAW: An open Python package for electronic structure calculations
  • 2024
  • Ingår i: Journal of Chemical Physics. - 1089-7690 .- 0021-9606. ; 160:9
  • Tidskriftsartikel (refereegranskat)abstract
    • We review the GPAW open-source Python package for electronic structure calculations. GPAW is based on the projector-augmented wave method and can solve the self-consistent density functional theory (DFT) equations using three different wave-function representations, namely real-space grids, plane waves, and numerical atomic orbitals. The three representations are complementary and mutually independent and can be connected by transformations via the real-space grid. This multi-basis feature renders GPAW highly versatile and unique among similar codes. By virtue of its modular structure, the GPAW code constitutes an ideal platform for the implementation of new features and methodologies. Moreover, it is well integrated with the Atomic Simulation Environment (ASE), providing a flexible and dynamic user interface. In addition to ground-state DFT calculations, GPAW supports many-body GW band structures, optical excitations from the Bethe-Salpeter Equation, variational calculations of excited states in molecules and solids via direct optimization, and real-time propagation of the Kohn-Sham equations within time-dependent DFT. A range of more advanced methods to describe magnetic excitations and non-collinear magnetism in solids are also now available. In addition, GPAW can calculate non-linear optical tensors of solids, charged crystal point defects, and much more. Recently, support for graphics processing unit (GPU) acceleration has been achieved with minor modifications to the GPAW code thanks to the CuPy library. We end the review with an outlook, describing some future plans for GPAW.
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3.
  • Thapper, Johan, 1977- (författare)
  • Combinatorial Considerations on Two Models from Statistical Mechanics
  • 2007
  • Licentiatavhandling (övrigt vetenskapligt/konstnärligt)abstract
    • Interactions between combinatorics and statistical mechanics have provided many fruitful insights in both fields. A compelling example is Kuperberg’s solution to the alternating sign matrix conjecture, and its following generalisations. In this thesis we investigate two models from statistical mechanics which have received attention in recent years.The first is the fully packed loop model. A conjecture from 2001 by Razumov and Stroganov opened the field for a large ongoing investigation of the O(1) loop model and its connections to a refinement of the fully packed loop model. We apply a combinatorial bijection originally found by de Gier to an older conjecture made by Propp.The second model is the hard particle model. Recent discoveries by Fendley et al. and results by Jonsson suggests that the hard square model with cylindrical boundary conditions possess some beautiful combinatorial properties. We apply both topological and purely combinatorial methods to related independence complexes to try and gain a better understanding of this model.
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4.
  • Barth, Julia M.I., et al. (författare)
  • Genome architecture enables local adaptation of Atlantic cod despite high connectivity
  • 2017
  • Ingår i: Molecular Ecology. - : Wiley. - 0962-1083 .- 1365-294X. ; 26:17, s. 4452-4466
  • Tidskriftsartikel (refereegranskat)abstract
    • Adaptation to local conditions is a fundamental process in evolution; however, mechanisms maintaining local adaptation despite high gene flow are still poorly understood. Marine ecosystems provide a wide array of diverse habitats that frequently promote ecological adaptation even in species characterized by strong levels of gene flow. As one example, populations of the marine fish Atlantic cod (Gadus morhua) are highly connected due to immense dispersal capabilities but nevertheless show local adaptation in several key traits. By combining population genomic analyses based on 12K single nucleotide polymorphisms with larval dispersal patterns inferred using a biophysical ocean model, we show that Atlantic cod individuals residing in sheltered estuarine habitats of Scandinavian fjords mainly belong to offshore oceanic populations with considerable connectivity between these diverse ecosystems. Nevertheless, we also find evidence for discrete fjord populations that are genetically differentiated from offshore populations, indicative of local adaptation, the degree of which appears to be influenced by connectivity. Analyses of the genomic architecture reveal a significant overrepresentation of a large ~5 Mb chromosomal rearrangement in fjord cod, previously proposed to comprise genes critical for the survival at low salinities. This suggests that despite considerable connectivity with offshore populations, local adaptation to fjord environments may be enabled by suppression of recombination in the rearranged region. Our study provides new insights into the potential of local adaptation in high gene flow species within fine geographical scales and highlights the importance of genome architecture in analyses of ecological adaptation.
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5.
  • Binde, Per, 1956, et al. (författare)
  • Inledning: Spelberoendes riksförbund tio år
  • 2010
  • Ingår i: Spelberoendes riksförbund 10 år: En jubileumsskrift, red. P. Binde & J. Jonsson. - Östersund : Statens folkhälsoinstitut. - 9789172576858 ; , s. 6-11
  • Bokkapitel (övrigt vetenskapligt/konstnärligt)abstract
    • Den svenska spelmarknaden har förändrats och växt kraftigt den senaste tioårsperioden. Vi har fått statliga kasinon och på Internet går det att spela på det mesta från bingo till poker. Så gott som dagligen rapporterar massmedia om spelpolitik och spelberoende. Medvetenheten om spelberoende har ökat och starkt bidragande till det är Spelberoendes riksförbund. Förbundet har i tio år informerat om spelberoende och gett stöd till människor med spelproblem och deras anhöriga. Den här jubileumsskriften ger en bild av spelproblem i Sverige och kamratstödet i spelberoendes föreningar. Ungas spelande och de anhörigas situation tas upp av flera författare. Läsaren får också veta hur medvetenheten om spelberoende växte fram i Sverige och ta del av diskussioner om hur framtidens spelande kan gestalta sig. I boken medverkar aktiva inom förbundet, eldsjälar från lokalföreningar och spelberoende som har fått hjälp. Även spelforskare och personer som på olika sätt arbetat med spelfrågor har bidragit med kapitel. Skriften är utgiven med stöd av Statens folkhälsoinstitut. I detta inledningskapitel presenteras spelberoendes riksförbund, författarna och deras bidrag till jubileumsskriften.
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6.
  • Caplat, Paul, et al. (författare)
  • Looking beyond the mountain: dispersal barriers in a changing world
  • 2016
  • Ingår i: Frontiers in Ecology and the Environment. - : Wiley. - 1540-9295 .- 1540-9309. ; 14:5, s. 262-269
  • Tidskriftsartikel (refereegranskat)abstract
    • Dispersal barriers have demographic, evolutionary, and ecosystem-wide consequences. With ongoing changes in the environment, some dispersal barriers will likely disappear while new ones will appear, and it is crucial to understand these dynamics to forecast species' distributions and adaptive potential. Here we review recent literature on the ecological and evolutionary aspects of dispersal to highlight key dynamics of dispersal barriers in the face of global change. After defining dispersal barriers, we explain that a better understanding of their dynamics requires identifying the barrier types that are most susceptible to change and predicting species' responses. This knowledge is a prerequisite for designing management strategies to increase or reduce connectivity, and maintain adaptive potential. Our intent is to motivate researchers to explicitly consider dispersal barriers in order to better forecast the dynamics of species and ecosystems subject to global change.
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7.
  • Carlbring, Per, 1972-, et al. (författare)
  • Internet-based treatment of pathological gambling with a three-year follow-up
  • 2012
  • Ingår i: Cognitive Behaviour Therapy. - : Routledge. - 1650-6073 .- 1651-2316. ; 41:4, s. 321-34
  • Tidskriftsartikel (refereegranskat)abstract
    • Effective therapies for pathological gambling exist, but their use is limited to about 10% of the target population. In an attempt to lower the barriers for help, Internet-based cognitive behavioural therapy (ICBT) has been shown to be effective when delivered to a non-depressed sample with pathological gambling. This study sought to extend this finding to a larger, more representative population, and also test a model to predict responder status. Following advertisement, a total of 284 participants started an 8-week ICBT programme with minimal therapist contact via e-mail and weekly telephone calls of less than 15 min. The average time spent on each participant, including telephone conversations, e-mail, and administration, was 4 h. In addition to a mixed effects model to evaluate the effectiveness of the treatment, two logistic regression analyses were performed with the following eight pre-defined response predictor variables: work-life satisfaction, primary gambling activity, debts due to gambling, social support, personal yearly salary, alcohol consumption, stage of change, and dissociative gambling. ICBT resulted in statistically significant reductions in the scores of pathological gambling, anxiety, and depression as well as an increase in quality of life compared to pre-treatment levels. Follow-ups carried out in the treatment group at 6, 18, and 36 months indicated that treatment effects were sustained. Using the eight predictor variable model rendered an acceptable predictive ability to identify responders both at post-test (AUC = .72, p < .01) and at 36-month follow-up (AUC = .70, p < .01). We conclude that ICBT for pathological gamblers, even if depressed, can be effective and that outcome can partly be predicted by pre-treatment characteristics.
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8.
  • Carlbring, Per, et al. (författare)
  • Spelberoende
  • 2013. - 2
  • Ingår i: KBT inom psykiatrin. - Stockholm : Natur och kultur. - 9789127135604 ; , s. 337-353
  • Bokkapitel (övrigt vetenskapligt/konstnärligt)abstract
    • Här beskrivs hur KBT kan tillämpas vid de vanligaste psykiatriska tillstånden. I denna uppdaterade och utvidgade utgåva har nya kapitel tillkommit, bland annat om fallformulering, spelberoende, internetbehandling samt KBT och psykofarmaka. (Från baksidestexten.)
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9.
  • Cederwall, Martin, et al. (författare)
  • Canonical supermultiplets and their Koszul duals
  • 2024
  • Ingår i: Communications in Mathematical Physics. - : Springer. - 0010-3616 .- 1432-0916. ; 405:5
  • Tidskriftsartikel (refereegranskat)abstract
    • The pure spinor superfield formalism reveals that, in any dimension and with any amount of supersymmetry, one particular supermultiplet is distinguished from all others. This “canonical supermultiplet” is equipped with an additional structure that is not apparent in any component-field formalism: a (homotopy) commutative algebra structure on the space of fields. The structure is physically relevant in several ways; it is responsible for the interactions in ten-dimensional super Yang–Mills theory, as well as crucial to any first-quantised interpretation. We study the L∞ algebra structure that is Koszul dual to this commutative algebra, both in general and in numerous examples, and prove that it is equivalent to the subalgebra of the Koszul dual to functions on the space of generalised pure spinors in internal degree greater than or equal to three. In many examples, the latter is the positive part of a Borcherds–Kac–Moody superalgebra. Using this result, we can interpret the canonical multiplet as the homotopy fiber of the map from generalised pure spinor space to its derived replacement. This generalises and extends work of Movshev–Schwarz and Gálvez–Gorbounov–Shaikh–Tonks in the same spirit. We also comment on some issues with physical interpretations of the canonical multiplet, which are illustrated by an example related to the complex Cayley plane, and on possible extensions of our construction, which appear relevant in an example with symmetry type G2 × A1 .
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10.
  • Conley, Daniel, et al. (författare)
  • Hypoxia is increasing in the coastal zone of the Baltic Sea
  • 2011
  • Ingår i: Environmental Science and Technology. - : American Chemical Society (ACS). - 0013-936X .- 1520-5851. ; 45:16, s. 6777-6783
  • Tidskriftsartikel (refereegranskat)abstract
    • Hypoxia is a well-described phenomenon in the offshore waters of the Baltic Sea with both the spatial extent and intensity of hypoxia known to have increased due to anthropogenic eutrophication, however, an unknown amount of hypoxia is present in the coastal zone. Here we report on the widespread unprecedented occurrence of hypoxia across the coastal zone of the Baltic Sea. We have identified 115 sites that have experienced hypoxia during the period 1955-2009 increasing the global total to ca. 500 sites, with the Baltic Sea coastal zone containing over 20% of all known sites worldwide. Most sites experienced episodic hypoxia, which is a precursor to development of seasonal hypoxia. The Baltic Sea coastal zone displays an alarming trend with hypoxia steadily increasing with time since the 1950s effecting nutrient biogeochemical processes, ecosystem services, and coastal habitat.
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