| 1. |
- Ma, Li-Jun, et al.
(författare)
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Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.
- 2010
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 464:7287, s. 367-73
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Tidskriftsartikel (refereegranskat)abstract
- Fusarium species are among the most important phytopathogenic and toxigenic fungi. To understand the molecular underpinnings of pathogenicity in the genus Fusarium, we compared the genomes of three phenotypically diverse species: Fusarium graminearum, Fusarium verticillioides and Fusarium oxysporum f. sp. lycopersici. Our analysis revealed lineage-specific (LS) genomic regions in F. oxysporum that include four entire chromosomes and account for more than one-quarter of the genome. LS regions are rich in transposons and genes with distinct evolutionary profiles but related to pathogenicity, indicative of horizontal acquisition. Experimentally, we demonstrate the transfer of two LS chromosomes between strains of F. oxysporum, converting a non-pathogenic strain into a pathogen. Transfer of LS chromosomes between otherwise genetically isolated strains explains the polyphyletic origin of host specificity and the emergence of new pathogenic lineages in F. oxysporum. These findings put the evolution of fungal pathogenicity into a new perspective.
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| 2. |
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| 3. |
- Bavassano Cattaneo, M. Bice, et al.
(författare)
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Kinetic signatures during a quasi-continuous lobe reconnection event : Cluster Ion Spectrometer (CIS) observations
- 2006
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Ingår i: Journal of Geophysical Research. - 0148-0227 .- 2156-2202. ; 111:A9, s. A09212-
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Tidskriftsartikel (refereegranskat)abstract
- On 3 December 2001 the Cluster spacecraft observed a long-lasting lobe reconnection event in the southern high-latitude dusk magnetopause (MP) tailward of the cusp, during a 4 hour interval of mainly northward interplanetary magnetic field ( IMF) and of sub-Alfvenic magnetosheath flow. Almost all the MP encounters have accelerated flows ( for which the Walen test has been successfully verified by Retino et al. ( 2005)) as well as a large number of secondary populations related to reconnection, that is, ions of magnetosheath or magnetospheric origin which cross the MP either way. The detailed analysis of the distribution functions shows that the reconnection site frequently moves relative to the spacecraft, but simultaneous measurements by two spacecraft on opposite sides of the reconnection site indicate that the spacecraft's distance from the X line is small, i.e., below 3200 km. The vicinity to the X line throughout the event is probably the reason why the distribution functions characteristics agree with theoretical expectations on both sides of the reconnection site throughout this long event. Moreover, the detailed analysis of the distribution functions shows evidence, during a few time intervals, of dual reconnection, i.e., of reconnection simultaneously going on also in the northern hemisphere.
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| 4. |
- Fuselier, S. A., et al.
(författare)
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High-density O+ in Earth's outer magnetosphere and its effect on dayside magnetopause magnetic reconnection
- 2019
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Ingår i: Journal of Geophysical Research - Space Physics. - : AMER GEOPHYSICAL UNION. - 2169-9380 .- 2169-9402. ; 124:12, s. 10257-10269
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Tidskriftsartikel (refereegranskat)abstract
- The warm plasma cloak is a source of magnetospheric plasma that contain significant O+. When the O+ density in the magnetosphere near the magnetopause is >0.2 cm(-3) and the H+ density is <1.5 cm(-3), then O+ dominates the magnetospheric ion mass density by more than a factor of 2. A survey is conducted of such O+-rich warm plasma cloak intervals and their effect on reconnection at the Earth's magnetopause. The survey uses data from the Magnetospheric Multiscale mission (MMS) and the results are compared and combined with a previous survey of the warm plasma cloak. Overall, the warm plasma cloak and the O+-rich warm plasma cloak reduce the magnetopause reconnection rate by >20% due to mass-loading only about 2% to 4% of the time. However, during geomagnetic storms, O+ dominates the mass density of the warm plasma cloak and these mass densities are very high. Therefore, a separate study is conducted to determine the effect of the warm plasma cloak on magnetopause reconnection during geomagnetically disturbed times. This study shows that the warm plasma cloak reduces the reconnection rate significantly about 25% of the time during disturbed conditions.
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| 5. |
- Fuselier, S. A., et al.
(författare)
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Mass Loading the Earth's Dayside Magnetopause Boundary Layer and Its Effect on Magnetic Reconnection
- 2019
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Ingår i: Geophysical Research Letters. - : AMER GEOPHYSICAL UNION. - 0094-8276 .- 1944-8007. ; 46:12, s. 6204-6213
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Tidskriftsartikel (refereegranskat)abstract
- When the interplanetary magnetic field is northward for a period of time, O+ from the high-latitude ionosphere escapes along reconnected magnetic field lines into the dayside magnetopause boundary layer. Dual-lobe reconnection closes these field lines, which traps O+ and mass loads the boundary layer. This O+ is an additional source of magnetospheric plasma that interacts with magnetosheath plasma through magnetic reconnection. This mass loading and interaction is illustrated through analysis of a magnetopause crossing by the Magnetospheric Multiscale spacecraft. While in the O+-rich boundary layer, the interplanetary magnetic field turns southward. As the Magnetospheric Multiscale spacecraft cross the high-shear magnetopause, reconnection signatures are observed. While the reconnection rate is likely reduced by the mass loading, reconnection is not suppressed at the magnetopause. The high-latitude dayside ionosphere is therefore a source of magnetospheric ions that contributes often to transient reduction in the reconnection rate at the dayside magnetopause.
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| 6. |
- Glasius, M., et al.
(författare)
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Composition and sources of carbonaceous aerosols in Northern Europe during winter
- 2018
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Ingår i: Atmospheric Environment. - : Elsevier BV. - 1873-2844 .- 1352-2310. ; 173, s. 127-141
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Tidskriftsartikel (refereegranskat)abstract
- Sources of elemental carbon (EC) and organic carbon (OC) in atmospheric aerosols (carbonaceous aerosols) were investigated by collection of weekly aerosol filter samples at six background sites in Northern Europe (Birkenes, Norway; Vavihill, Sweden; Risoe, Denmark; Cabauw and Rotterdam in The Netherlands; Melpitz, Germany) during winter 2013. Analysis of 14 C and a set of molecular tracers were used to constrain the sources of EC and OC. During the four-week campaign, most sites (in particular those in Germany and The Netherlands) were affected by an episode during the first two weeks with high concentrations of aerosol, as continental air masses were transported westward. The analysis results showed a clear, increasing north to south gradient for most molecular tracers. Total carbon (TC = OC + EC) at Birkenes showed an average concentration of 0.5 ± 0.3 μg C m −3 , whereas the average concentration at Melpitz was 6.0 ± 4.3 μg C m −3 . One weekly mean TC concentration as high as 11 μg C m −3 was observed at Melpitz. Average levoglucosan concentrations varied by an order of magnitude from 25 ± 13 ng m −3 (Birkenes) to 249 ± 13 ng m −3 (Melpitz), while concentrations of tracers of fungal spores (arabitol and mannitol) and vegetative debris (cellulose) were very low, showing a minor influence of primary biological aerosol particles during the North European winter. The fraction of modern carbon generally varied from 0.57 (Melpitz) to 0.91 (Birkenes), showing an opposite trend compared to the molecular tracers and TC. Total concentrations of 10 biogenic and anthropogenic carboxylic acids, mainly of secondary origin, were 4–53 ng m −3 , with the lowest concentrations observed at Birkenes and the highest at Melpitz. However, the highest relative concentrations of carboxylic acids (normalized to TC) were observed at the most northern sites. Levels of organosulphates and nitrooxy organosulphates varied more than two orders of magnitude, from 2 to 414 ng m −3 , between individual sites and samples. The three sites Melpitz, Rotterdam and Cabauw, located closest to source regions in continental Europe, showed very high levels of organosulphates and nitrooxy organosulphates (up to 414 ng m −3 ) during the first two weeks of the study, while low levels ( < 7 ng m −3 ) were found at all sites except Melpitz during the last week. The large variation in organosulphate levels probably reflects differences in the presence of acidic sulphate aerosols, known from laboratory studies to accelerate the formation of these compounds. On average, the ratio of organic sulphate to inorganic sulphate was 1.5 ± 1.0% (range 0.1–3.4%). Latin-hypercube source apportionment techniques identified biomass burning as the major source of OC for all samples at all sites (typically > 40% of TC), while use and combustion of fossil fuels was the second most important source. Furthermore, EC from biomass burning accounted for 7–16% of TC, whereas EC from fossil sources contributed to < 2–23% of TC, of which the highest percentages were observed for low-concentration aerosol samples. Unresolved non-fossil sources (such as cooking and biogenic secondary organic aerosols) did not account for more than 5–12% of TC. The results confirm that wood combustion is a major source to OC and EC in Northern Europe during winter.
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| 7. |
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| 8. |
- Arvelius, S., et al.
(författare)
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Statistical study of relationships between dayside high-altitude and high-latitude O+ ion outflows, solar winds, and geomagnetic activity
- 2005
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Ingår i: Annales Geophysicae. - : Copernicus GmbH. - 0992-7689 .- 1432-0576. ; 23, s. 1909-1916
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Tidskriftsartikel (refereegranskat)abstract
- The persistent outflows of O+ ions observed by the Cluster CIS/CODIF instrument were studied statistically in the high-altitude (from 3 up to 11 RE) and high-latitude (from 70 to ~90 deg invariant latitude, ILAT) polar region. The principal results are: (1) Outflowing O+ ions with more than 1keV are observed above 10 RE geocentric distance and above 85deg ILAT location; (2) at 6-8 RE geocentric distance, the latitudinal distribution of O+ ion outflow is consistent with velocity filter dispersion from a source equatorward and below the spacecraft (e.g. the cusp/cleft); (3) however, at 8-12 RE geocentric distance the distribution of O+ outflows cannot be explained by velocity filter only. The results suggest that additional energization or acceleration processes for outflowing O+ ions occur at high altitudes and high latitudes in the dayside polar region.
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| 9. |
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| 10. |
- Giang, Tony, et al.
(författare)
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Outflowing protons and heavy ions as a source for the sub-keV ringcurrent
- 2009
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Ingår i: Annales Geophysicae. - : Copernicus GmbH. - 0992-7689 .- 1432-0576. ; 27:2, s. 839-849
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Tidskriftsartikel (refereegranskat)abstract
- Data from the Cluster CIS instrument have been used for studying proton and heavy ion (O+ and He+ ) char- acteristics of the sub-keV ring current. Thirteen events with dispersed heavy ions (O+ and He+ ) were identified out of two years (2001 and 2002) of Cluster data. Allevents took place during rather geomagnetically quiet periods. Three of those events have been investigated in detail: 21 August 2001, 26 November 2001 and 20 February 2002. These events were chosen from varying magnetic local times (MLT), and they showed different characteristics. In this article, we discuss the potential source for sub-keV ring current ions. We show that: (1) outflows of terrestrialsub-keV ions are supplied to the ring current also during quiet geomagnetic conditions; (2) the composition of the out-flow implies an origin that covers an altitude interval from the low-altitude ionosphere to the plasmasphere, and (3) terrestrial ions are moving upward along magnetic field lines, at times forming narrow collimated beams, but frequently also as broad beams. Over time, the ion beams are expected to gradually become isotropised as a result of wave-particleinteraction, eventually taking the form of isotropic drifting sub-keV ion signatures. We argue that the sub-keV energy-time dispersed signatures originate from field-aligned terrestrial ion energising and outflow, which may occur at all local times and persist also during quiet times.
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