| 1. |
- Barnett, Ross, et al.
(författare)
-
Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens
- 2020
-
Ingår i: Current Biology. - 0960-9822 .- 1879-0445.
-
Tidskriftsartikel (refereegranskat)abstract
- Summary Homotherium was a genus of large-bodied scimitar-toothed cats, morphologically distinct from any extant felid species, that went extinct at the end of the Pleistocene [1, 2, 3, 4]. They possessed large, saber-form serrated canine teeth, powerful forelimbs, a sloping back, and an enlarged optic bulb, all of which were key characteristics for predation on Pleistocene megafauna [5]. Previous mitochondrial DNA phylogenies suggested that it was a highly divergent sister lineage to all extant cat species [6, 7, 8]. However, mitochondrial phylogenies can be misled by hybridization [9], incomplete lineage sorting (ILS), or sex-biased dispersal patterns [10], which might be especially relevant for Homotherium since widespread mito-nuclear discrepancies have been uncovered in modern cats [10]. To examine the evolutionary history of Homotherium, we generated a ∼7x nuclear genome and a ∼38x exome from H. latidens using shotgun and target-capture sequencing approaches. Phylogenetic analyses reveal Homotherium as highly divergent (∼22.5 Ma) from living cat species, with no detectable signs of gene flow. Comparative genomic analyses found signatures of positive selection in several genes, including those involved in vision, cognitive function, and energy consumption, putatively consistent with diurnal activity, well-developed social behavior, and cursorial hunting [5]. Finally, we uncover relatively high levels of genetic diversity, suggesting that Homotherium may have been more abundant than the limited fossil record suggests [3, 4, 11, 12, 13, 14]. Our findings complement and extend previous inferences from both the fossil record and initial molecular studies, enhancing our understanding of the evolution and ecology of this remarkable lineage.
|
|
| 2. |
- Brinkmalm, Gunnar, et al.
(författare)
-
An online nano-LC-ESI-FTICR-MS method for comprehensive characterization of endogenous fragments from amyloid β and amyloid precursor protein in human and cat cerebrospinal fluid.
- 2012
-
Ingår i: Journal of mass spectrometry : JMS. - : Wiley. - 1096-9888 .- 1076-5174. ; 47:5, s. 591-603
-
Tidskriftsartikel (refereegranskat)abstract
- Amyloid precursor protein (APP) is the precursor protein to amyloid β (Aβ), the main constituent of senile plaques in Alzheimer's disease (AD). Endogenous Aβ peptides reflect the APP processing, and greater knowledge of different APP degradation pathways is important to understand the mechanism underlying AD pathology. When one analyzes longer Aβ peptides by low-energy collision-induced dissociation tandem mass spectrometry (MS/MS), mainly long b-fragments are observed, limiting the possibility to determine variations such as amino acid variants or post-translational modifications (PTMs) within the N-terminal half of the peptide. However, by using electron capture dissociation (ECD), we obtained a more comprehensive sequence coverage for several APP/Aβ peptide species, thus enabling a deeper characterization of possible variants and PTMs. Abnormal APP/Aβ processing has also been described in the lysosomal storage disease Niemann-Pick type C and the major large animal used for studying this disease is cat. By ECD MS/MS, a substitution of Asp7 → Glu in cat Aβ was identified. Further, sialylated core 1 like O-glycans at Tyr10, recently discovered in human Aβ (a previously unknown glycosylation type), were identified also in cat cerebrospinal fluid (CSF). It is therefore likely that this unusual type of glycosylation is common for (at least) species belonging to the magnorder Boreoeutheria. We here describe a detailed characterization of endogenous APP/Aβ peptide species in CSF by using an online top-down MS-based method.
|
|
| 3. |
- Casini, Michele, et al.
(författare)
-
Density-dependence in space and time: Opposite synchronous variations in population distribution and body condition in the baltic sea sprat (Sprattus sprattus) over three decades
- 2014
-
Ingår i: PLoS ONE. - : Public Library of Science. - 1932-6203. ; 9:4
-
Tidskriftsartikel (refereegranskat)abstract
- Spatio-temporal density-dependent processes are crucial regulatory factors for natural populations. However, there is a lack of studies addressing spatial density-dependence in fish growth. A previous investigation has suggested spatio-temporal density-dependence in body condition of Baltic sprat. Here, we used different techniques, such as centre of gravity, distance, and homogeneity indices, to better characterize the spatial and temporal variations in sprat density and body condition in the Baltic Proper. Our results evidenced a negative spatio-temporal co-variation between the centres of gravity of density and maximum condition. In the 1980s-early 1990s both centres were located in the middle of the Baltic Proper. From the mid 1990s the centres progressively separated in space, as the sprat population moved towards the north-eastern Baltic Proper, and the centre of maximum condition towards the south-western areas. Moreover, at low abundances, sprat density and condition were homogeneously distributed in space, whereas at high abundances both density and condition showed pronounced geographical gradients. The ecological processes potentially explaining the observed patterns were discussed in the light of the Ideal Free Distribution theory. We provide evidence that the shift in the spatial distribution of cod, the main predator of sprat, has been the main factor triggering the overall spatial changes in sprat density, and thus condition, during the past thirty years. The spatial indices shown here, synthesizing the spatio-temporal patterns of fish distribution, can support the implementation of the EU Marine Strategy Framework Directive. © 2014 Casini et al.
|
|
| 4. |
|
|
| 5. |
- Casini, Michele, et al.
(författare)
-
Spatio-temporal dynamics and behavioural ecology of a "demersal" fish population as detected using research survey pelagic trawl catches: the Eastern Baltic Sea cod (Gadus morhua)
- 2019
-
Ingår i: ICES Journal of Marine Science. - : Oxford University Press (OUP). - 1054-3139 .- 1095-9289. ; 76, s. 1591-1600
-
Tidskriftsartikel (refereegranskat)abstract
- Cod is usually monitored for scientific purposes using bottom trawl surveys, although its regular pelagic occurrence is well documented. Here we analysed, using Generalized Additive Models, the spatio-temporal changes in the Eastern Baltic cod adult population using pelagic catches from an acoustic survey covering 37 years and the whole central Baltic Sea. Our analysis shows that in the northern areas cod catch per unit effort (CPUE, kg h(-1)) was high in the early 1980s whereas it dropped and remained very low thereafter. Conversely, in the southernmost area CPUE largely oscillated after the early 1990s. Our model was able to capture key ecological features of the Baltic cod such as preferred depth of occurrence and response to hypoxic conditions. The model also revealed a clear daily cycle of CPUEs, indicating diel vertical migrations at the population level. The temporal trends of pelagic CPUEs generally followed those from the bottom trawl surveys, although differences were observed especially in the recent years with a relative decline in the cod occurring in the pelagic waters. Our results point to the great potential of acoustic survey trawl catches to complement bottom trawl surveys for investigating the spatio-temporal population dynamics and behaviour of the Baltic cod.
|
|
| 6. |
- Hentati-Sundberg, Jonas, et al.
(författare)
-
FISH AND SEABIRD SPATIAL DISTRIBUTION AND ABUNDANCE AROUND THE LARGEST SEABIRD COLONY IN THE BALTIC SEA
- 2018
-
Ingår i: Marine Ornithology. - 1018-3337 .- 2074-1235. ; 46:1, s. 61-68
-
Tidskriftsartikel (refereegranskat)abstract
- We studied the at-sea distribution of two auks (Common Murre Uria aalge, Razorbill Alca torda), two gulls (Lesser Black-backed Gull Larus fuscus, Herring Gull Larus argentatus), and Great Cormorant Phalacrocorax carbo during the peak breeding season of 2014 around Stora Karlso, the main Baltic Sea seabird colony. Simultaneously, we quantified forage fish abundance and distribution using hydro-acoustics and pelagic trawling. The auks and gulls had a roughly similar distribution, foraging mainly about 40 km west-northwest from the colony. Great Cormorants were found only in inshore areas, close to the colony. Sprat Sprattus sprattus and herring Clupea harengus biomass was, respectively, 1.38 and 2.68 mt/km(2) averaged over the whole study area. These estimates represent a total biomass for small pelagic fish of 17 900 t in the 4 408 km(2) study area. The estimated prey consumption over the breeding season was 2 310 t for Common Murre and Razorbill combined. Thus, auks may have a non-negligible impact on their prey sources in the region. Common Murres foraged closer to the colony (median 36.3 km) than Razorbills (median 41.1 km), but we found no significant correlation between auk at-sea numbers and fish densities. We discuss how new technology can contribute to detailed monitoring of the interactions between seabirds and fish at different spatial and temporal scales, with the ultimate aim of providing a scientific basis for ecosystem-based management.
|
|
| 7. |
- Hesse, Camilla, et al.
(författare)
-
The N-terminal domain of α-dystroglycan is released as a 38kDa protein and is increased in cerebrospinal fluid in patients with Lyme neuroborreliosis.
- 2011
-
Ingår i: Biochemical and biophysical research communications. - : Elsevier BV. - 1090-2104 .- 0006-291X. ; 412:3, s. 494-499
-
Tidskriftsartikel (refereegranskat)abstract
- α-Dystroglycan is an extracellular adhesion protein that is known to interact with different ligands. The interaction is thought to stabilize the integrity of the plasma membrane. The N-terminal part of α-dystroglycan may be proteolytically processed to generate a small 38kDa protein (α-DG-N). The physiological significance of α-DG-N is unclear but has been suggested to be involved in nerve regeneration and myelination and to function as a potential biomarker for neurodegenerative and neuromuscular diseases. In this report we show that α-DG-N is released into different body fluids, such as lachrimal fluid, cerebrospinal fluid (CSF), urine and plasma. To investigate the significance of α-DG-N in CSF we examined the levels of α-DG-N and known neurodegenerative markers in CSF from patients diagnosed with Lyme neuroborreliosis (LNB) and healthy controls. In untreated acute phase LNB patients, 67% showed a significant increase of CSF α-DG-N compared to healthy controls. After treatment with antibiotics the CSF α-DG-N levels were normalized in the LNB patients.
|
|
| 8. |
|
|
| 9. |
|
|
| 10. |
|
|
