| 1. |
- Beal, Jacob, et al.
(författare)
-
Robust estimation of bacterial cell count from optical density
- 2020
-
Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
-
Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
|
|
| 2. |
- Dixon, P., et al.
(författare)
-
Nitrogen-Hydrogen Defects in GaP
- 1998
-
Ingår i: Physica status solidi. B, Basic research. - 0370-1972 .- 1521-3951. ; 210:2, s. 321-326
-
Tidskriftsartikel (refereegranskat)abstract
- Models of the nitrogen-hydrogen defect in GaP, which contain one and two H atoms, are investigated using ab initio density functional cluster theory. We find that a single H atom binding to N possesses two infrared absorption frequencies close to those attributed to an NH2 defect. The modes shift with its charge state consistent with the photo-sensitivity found for the defect. A third mode observed for this centre is assumed to be an overtone of the bend mode. The isotope shifts of the calculated modes are in excellent agreement with experiment in contrast with the model which contains two H atoms.
|
|
| 3. |
- Estreicher, S.K., et al.
(författare)
-
Stable and metastable states of C60H: buckminsterfullerene monohydride
- 1992
-
Ingår i: Chemical Physics Letters. - 0009-2614 .- 1873-4448. ; 196:3-4, s. 311-316
-
Tidskriftsartikel (refereegranskat)abstract
- Approximate ab initio Hartree-Fock and first-principles density functional calculations of potential energy surfaces and electronic structures of C60H show that the stable state has H attached to one C atom, outside the buckyball. This C atom is displaced radially outward and is close to being sp3 hybridized. The unpaired electron of C60H is delocalized. The calculated Fermi contact density at the proton is in good agreement with recent low-temperature μSR data. A metastable configuration has atomic H at the center of the ball (H@C60). Once trapped there, H must overcome a large barrier to go through the surface of C60. Other configurations we considered include H attached to one C atom but inside the buckyball, and H bridging one of the two inequivalent CC bonds. The barrier for diffusion of H from outside to the center of C60 have also been calculated. The results are compared to recent muon spin rotation studies in solid C60 and to the states of hydrogen in other forms of carbon.
|
|
| 4. |
- Hobson, Melissa J., et al.
(författare)
-
TOI-199 b : A Well-characterized 100 day Transiting Warm Giant Planet with TTVs Seen from Antarctica
- 2023
-
Ingår i: Astronomical Journal. - 0004-6256. ; 166:5
-
Tidskriftsartikel (refereegranskat)abstract
- We present the spectroscopic confirmation and precise mass measurement of the warm giant planet TOI-199 b. This planet was first identified in TESS photometry and confirmed using ground-based photometry from ASTEP in Antarctica including a full 6.5 hr long transit, PEST, Hazelwood, and LCO; space photometry from NEOSSat; and radial velocities (RVs) from FEROS, HARPS, CORALIE, and CHIRON. Orbiting a late G-type star, TOI-199 b has a 104.854 − 0.002 + 0.001 day period, a mass of 0.17 ± 0.02 M J, and a radius of 0.810 ± 0.005 R J. It is the first warm exo-Saturn with a precisely determined mass and radius. The TESS and ASTEP transits show strong transit timing variations (TTVs), pointing to the existence of a second planet in the system. The joint analysis of the RVs and TTVs provides a unique solution for the nontransiting companion TOI-199 c, which has a period of 273.69 − 0.22 + 0.26 days and an estimated mass of 0.28 − 0.01 + 0.02 M J . This period places it within the conservative habitable zone.
|
|
| 5. |
- Latham, Chris D., et al.
(författare)
-
Calculated properties of point defects in Be-doped GaN
- 2003
-
Ingår i: Physical Review B. Condensed Matter and Materials Physics. - 1098-0121 .- 1550-235X. ; 67:20, s. 205206-
-
Tidskriftsartikel (refereegranskat)abstract
- The properties of several point defects in hexagonal gallium nitride that can compensate beryllium shallow acceptors (BeGa) are calculated using the AIMPRO method based on local density functional theory. BeGa itself is predicted to have local vibrational modes (LVM's) very similar to magnesium acceptors. The highest frequency is about 663 cm-1. Consistent with other recent studies, we find that interstitial beryllium double donors and single-donor beryllium split interstitial pairs at gallium sites are very likely causes of compensation. The calculations predict that the split interstitial pairs possess three main LVM's at about 1041, 789, and 738 cm-1. Of these, the highest is very close to the experimental observation in Be-doped GaN. Although an oxygen donor at the nearest-neighboring site to a beryllium acceptor (BeGa-ON) is also a prime suspect among defects that are possibly responsible for compensation, its highest frequency is calculated to be about 699 cm-1 and hence is not related in any way to the observed center. Another mode for this defect is estimated to be about 523 cm-1 and is localized on the ON atom. These two vibrations of BeGa-ON are thus equivalent to those for the isolated substitutional centers perturbed by the presence of their impurity partners.
|
|
| 6. |
- Latham, Chris D., et al.
(författare)
-
Density-functional calculations of carbon doping in III-V compound semiconductors
- 2001
-
Ingår i: Physical Review B. Condensed Matter and Materials Physics. - 1098-0121 .- 1550-235X. ; 63:15, s. 155202-
-
Tidskriftsartikel (refereegranskat)abstract
- This article reports the results of investigations based on local-density-functional theory into the relative formation energies for single substitutional carbon atoms in nine III-V compound semiconductors. The calculations are performed using a supercell formalism derived from the AIMPRO real-space cluster method. Only a very slight trend is discernible down the periodic table. When a metal atom is replaced with carbon, it is energetically least favorable in the phosphides, very marginally lower energy in the arsenides, and ≈0.5-0.7 eV lower in the antimonides. The situation is approximately reversed when a P, As, or Sb atom is substituted by a C atom: for the In compounds the energy is ≈0.4-0.8 eV higher than for the Al and Ga compounds.
|
|
| 7. |
- Latham, Chris D., et al.
(författare)
-
Di-carbon complexes in AlAs and GaAs
- 1998
-
Ingår i: Physica status solidi. B, Basic research. - 0370-1972 .- 1521-3951. ; 210:2, s. 869-872
-
Tidskriftsartikel (refereegranskat)abstract
- Heat treatment of heavily carbon doped AlAs and GaAs results in a loss of CAS shallow acceptors. In Raman scattering experiments on annealed CBE grown GaAs with 12C and 13C isotopes, and MOVPE grown AlAs it is found that the loss of carriers is accompanied by the appearance of two high frequency lines. These lie near to the stretch mode of an isolated C2 molecule (1855 cm-1). This is consistent with the formation of two types of di-carbon defects in these materials where the C atoms are bonded together and one or both of which act as a donor. Using a local density functional method to investigate the structure and dynamics of several di-carbon defects, we find that the dimer at an As site is bistable and aligned approximately in a [100] direction in the neutral charge state, and in a [110] direction when positively ionised. The calculated frequencies lie within 10% of the measured values in both materials. Other defects are investigated too with a view of determining the structures giving rise to the modes.
|
|
