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| 2. |
- Brasseur, Marie V., et al.
(author)
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Impacts of multiple anthropogenic stressors on the transcriptional response of Gammarus fossarum in a mesocosm field experiment
- 2022
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In: BMC Genomics. - : Springer. - 1471-2164. ; 23:1
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Journal article (peer-reviewed)abstract
- Background: Freshwaters are exposed to multiple anthropogenic stressors, leading to habitat degradation and biodiversity decline. In particular, agricultural stressors are known to result in decreased abundances and community shifts towards more tolerant taxa. However, the combined effects of stressors are difficult to predict as they can interact in complex ways, leading to enhanced (synergistic) or decreased (antagonistic) response patterns. Furthermore, stress responses may remain undetected if only the abundance changes in ecological experiments are considered, as organisms may have physiological protective pathways to counteract stressor effects. Therefore, we here used transcriptome-wide sequencing data to quantify single and combined effects of elevated fine sediment deposition, increased salinity and reduced flow velocity on the gene expression of the amphipod Gammarus fossarum in a mesocosm field experiment.Results: Stressor exposure resulted in a strong transcriptional suppression of genes involved in metabolic and energy consuming cellular processes, indicating that G. fossarum responds to stressor exposure by directing energy to vitally essential processes. Treatments involving increased salinity induced by far the strongest transcriptional response, contrasting the observed abundance patterns where no effect was detected. Specifically, increased salinity induced the expression of detoxification enzymes and ion transporter genes, which control the membrane permeability of sodium, potassium or chloride. Stressor interactions at the physiological level were mainly antagonistic, such as the combined effect of increased fine sediment and reduced flow velocity. The compensation of the fine sediment induced effect by reduced flow velocity is in line with observations based on specimen abundance data.Conclusions: Our findings show that gene expression data provide new mechanistic insights in responses of freshwater organisms to multiple anthropogenic stressors. The assessment of stressor effects at the transcriptomic level and its integration with stressor effects at the level of specimen abundances significantly contribute to our understanding of multiple stressor effects in freshwater ecosystems.
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| 3. |
- Maasri, Alain, et al.
(author)
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A global agenda for advancing freshwater biodiversity research
- 2022
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In: Ecology Letters. - : Wiley. - 1461-023X .- 1461-0248. ; 25:2, s. 255-263
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Journal article (peer-reviewed)abstract
- Global freshwater biodiversity is declining dramatically, and meeting the challenges of this crisis requires bold goals and the mobilisation of substantial resources. While the reasons are varied, investments in both research and conservation of freshwater biodiversity lag far behind those in the terrestrial and marine realms. Inspired by a global consultation, we identify 15 pressing priority needs, grouped into five research areas, in an effort to support informed stewardship of freshwater biodiversity. The proposed agenda aims to advance freshwater biodiversity research globally as a critical step in improving coordinated actions towards its sustainable management and conservation.
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| 4. |
- Macher, Jan N., et al.
(author)
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Multiple-stressor effects on stream invertebrates : DNA barcoding reveals contrasting responses of cryptic mayfly species
- 2016
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In: Ecological Indicators. - : Elsevier. - 1470-160X .- 1872-7034. ; 61:January, s. 159-169
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Journal article (peer-reviewed)abstract
- Most freshwater ecosystems are subject to multiple anthropogenic stressors, which commonly reduce biodiversity across all levels. Existing freshwater bioassessment programmes aim at identifying responses of aquatic biota to stressors. For practical reasons, higher-level taxonomic groups (e.g. genus or family) are often used in these programmes. This approach, however, may bias assessment results as different species can differ substantially in their biological traits, thus emphasising the need for species-level data. DNA barcoding can reliably generate species-level data for animals by sequencing a fragment of the mitochondrial cytochrome c oxidase subunit I gene (COI). This allows investigating species-specific responses to environmental stressors. In this study, we sampled 43 stream sites in southern New Zealand spanning wide gradients of agricultural stressors (fine sediment and nutrient levels). We first used conventional morphological assessment to determine stream invertebrate responses to the stressors, focusing on two important indicator taxa, the mayfly Deleatidium and the snail Potamopyrgus. We then tested for the presence of cryptic species in Deleatidium and Potamopyrgus using DNA barcoding of the COI gene for 520 and 305 specimens, respectively. While all Potamopyrgus specimens belonged to a single species, Deleatidium consisted of 12 distinct molecularly identified clades that likely represent distinct species. Finally, we compared stressor responses assessed at genus and species level. While overall Deleatidium abundance was unrelated to stressor levels, some of the individual clades differed clearly in the magnitude and direction of their responses to nutrient and sediment stress. While the most abundant cryptic Deleatidium clade (clade 1) showed no relationship to sediment or nutrient levels, clades 2 and 3 responded negatively to nutrient or sediment increases, respectively. These contrasting patterns indicate that individual freshwater invertebrate species, often merged to a higher taxonomic level for biomonitoring purposes, can differ substantially in their tolerance to stressors and respond in more complex ways than observed at genus level. Overall, our results highlight the considerable potential and importance of including DNA barcoding into freshwater ecosystem assessment and biomonitoring programmes.
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| 5. |
- Mack, Leoni, et al.
(author)
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A Synthesis of Marine Monitoring Methods With the Potential to Enhance the Status Assessment of the Baltic Sea
- 2020
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In: Frontiers in Marine Science. - Lausanne : Frontiers Media S.A.. - 2296-7745. ; 7
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Journal article (peer-reviewed)abstract
- A multitude of anthropogenic pressures deteriorate the Baltic Sea, resulting in theneed to protect and restore its marine ecosystem. For an efficient conservation,comprehensive monitoring and assessment of all ecosystem elements is of fundamentalimportance. The Baltic Marine Environment Protection Commission HELCOMcoordinates conservation measures regulated by several European directives. However,this holistic assessment is hindered by gaps within the current monitoring schemes.Here, twenty-two novel methods with the potential to fill some of these gaps andimprove the monitoring of the Baltic marine environment are examined. We asked keystakeholders to point out methods likely to improve current Baltic Sea monitoring. Wethen described these methods in a comparable way and evaluated them based ontheir costs and applicability potential (i.e., possibility to make them operational). Twelvemethods require low to very low costs, while five require moderate and two high costs.Seventeen methods were rated with a high to very high applicability, whereas fourmethods had moderate and one low applicability for Baltic Sea monitoring. Methodswith both low costs and a high applicability include the Manta Trawl, Rocket, SedimentCorer, Argo Float, Artificial Substrates, Citizen Observation, Earth Observation, theHydroFIARpH system, DNA Metabarcoding and Stable Isotope Analysis. © 2020 Mack, Attila, Aylagas, Beermann, Borja, Hering, Kahlert, Leese, Lenz, Lehtiniemi, Liess, Lips, Mattila, Meissner, Pyhälahti, Setälä, Strehse, Uusitalo, Willstrand Wranne and Birk.
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| 6. |
- Salis, Romana K., et al.
(author)
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Effects of fungicides on aquatic fungi and bacteria : a comparison of morphological and molecular approaches from a microcosm experiment
- 2023
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In: Environmental Sciences Europe. - : Springer. - 2190-4707 .- 2190-4715. ; 35:1
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Journal article (peer-reviewed)abstract
- BackgroundFungicides are frequently used in agriculture and can enter freshwater ecosystems through multiple pathways. The negative impacts of fungicides on microorganisms, fungi in particular, and their functions such as leaf decomposition have been repeatedly shown. In our previous microcosm experiment with three consecutive cycles of fungicide exposure and colonisation of leaf substrate, we found clear functional changes, but no differences in fungal community structure could be detected using morphological identification by analysing the spores of aquatic hyphomycetes. In this study, we examined the effects on fungal and bacterial community composition in detail using ITS and 16S metabarcoding and comparing the results to morphologically assessed community composition.ResultsWhile we found fewer species with metabarcoding than with morphological identification, metabarcoding also enabled the identification of several fungal species that were otherwise unidentifiable morphologically. Moreover, by distinguishing individual amplicon sequence variants (ASVs) metabarcoding provided greater taxonomic resolution. In line with the morphological results, metabarcoding neither revealed effects of fungicides on the aquatic hyphomycetes nor on the total fungal or bacterial community composition. However, several ASVs responded significantly to fungicides, demonstrating variable tolerances within species.ConclusionsOverall, the absence of detectable effects of fungicides on the community structure despite clear functional effects, suggests a complex relationship between community structure and the ecosystem function of leaf decomposition.
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