| 1. |
- Falster, Daniel, et al.
(författare)
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AusTraits, a curated plant trait database for the Australian flora
- 2021
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Ingår i: Scientific Data. - : Nature Portfolio. - 2052-4463. ; 8:1
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Tidskriftsartikel (refereegranskat)abstract
- We introduce the AusTraits database - a compilation of values of plant traits for taxa in the Australian flora (hereafter AusTraits). AusTraits synthesises data on 448 traits across 28,640 taxa from field campaigns, published literature, taxonomic monographs, and individual taxon descriptions. Traits vary in scope from physiological measures of performance (e.g. photosynthetic gas exchange, water-use efficiency) to morphological attributes (e.g. leaf area, seed mass, plant height) which link to aspects of ecological variation. AusTraits contains curated and harmonised individual- and species-level measurements coupled to, where available, contextual information on site properties and experimental conditions. This article provides information on version 3.0.2 of AusTraits which contains data for 997,808 trait-by-taxon combinations. We envision AusTraits as an ongoing collaborative initiative for easily archiving and sharing trait data, which also provides a template for other national or regional initiatives globally to fill persistent gaps in trait knowledge.
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| 2. |
- Hendriks, Kasper P., et al.
(författare)
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Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset
- 2023
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Ingår i: Current Biology. - : Elsevier. - 0960-9822 .- 1879-0445. ; 33:19, s. 4052-4068
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Tidskriftsartikel (refereegranskat)abstract
- The mustard family (Brassicaceae) is a scientifically and economically important family, containing the model plant Arabidopsis thaliana and numerous crop species that feed billions worldwide. Despite its relevance, most phylogenetic trees of the family are incompletely sampled and often contain poorly supported branches. Here, we present the most complete Brassicaceae genus-level family phylogenies to date (Bras-sicaceae Tree of Life or BrassiToL) based on nuclear (1,081 genes, 319 of the 349 genera; 57 of the 58 tribes) and plastome (60 genes, 265 genera; all tribes) data. We found cytonuclear discordance between the two, which is likely a result of rampant hybridization among closely and more distantly related lineages. To eval-uate the impact of such hybridization on the nuclear phylogeny reconstruction, we performed five different gene sampling routines, which increasingly removed putatively paralog genes. Our cleaned subset of 297 genes revealed high support for the tribes, whereas support for the main lineages (supertribes) was moder-ate. Calibration based on the 20 most clock-like nuclear genes suggests a late Eocene to late Oligocene origin of the family. Finally, our results strongly support a recently published new family classification, dividing the family into two subfamilies (one with five supertribes), together representing 58 tribes. This includes five recently described or re-established tribes, including Arabidopsideae, a monogeneric tribe accommodating Arabidopsis without any close relatives. With a worldwide community of thousands of researchers working on Brassicaceae and its diverse members, our new genus-level family phylogeny will be an indispensable tool for studies on biodiversity and plant biology.
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| 3. |
- Swenson, Ulf, et al.
(författare)
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Phylogenetic position and reinstatement of Gayella (Sapotaceae), a monotypic genus endemic to Chile with an Eocene origin in continental Australia
- 2023
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Ingår i: Taxon. - : Wiley. - 0040-0262 .- 1996-8175. ; 72:2, s. 360-374
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Tidskriftsartikel (refereegranskat)abstract
- PouteriasplendensistheonlynativespeciesofSapotaceaeinChile,aspeciesonceplacedinthemonotypicgenusGayella and known as G. valparadisaea, but for a long time treated as a Pouteria. In a phylogenetic analysis, this species was placed in an Australasian clade, not with its presumed relatives in South America. We used Bayesian inference under a relaxed molecular clock in BEAST, nuclear ribosomal DNA (ETS, ITS), the nuclear gene RPB2, indel information, and 201 terminals to find the closest rel- ative of P. splendens and to estimate the age of the disjunction between Australasia and South America. The taxon has an isolated phylogenetic position, being part of the cladeʼs backbone, and is placed with weak support as sister to Van-royena, another monotypic genus, but endemic to Australia. Our results justify reinstatement of Gayella with its single species G. valparadisaea. Gayella has a unique combination of morphological features including alternate, opposite or 3-whorled leaves, often on the same plant, a usually 6-lobed, rotate corolla with revolute corolla lobes giving the flower a star-like appearance, lacerate to dentate staminodes, and yellow-orange-red fruit with plano-convex cotyledons and an exserted radicle below the cotyledon commissure. The split between Gayella and Van-royena is estimated to the late Eocene at about 40.0 Ma (50.5–25.3 Ma). The hypothesis that the presence of Gayella in South America is a result of vicariance is consistent with the timing of the geological splits of southern Gondwana, as well as with evidence from fossil pollen, but long-distance dispersal is an alternative explanation that cannot be excluded. Gayella is restricted to an area with a Mediterranean-type climate in coastal central Chile, where it occurs in rocky places, ravines, and gullies, usually below 100 m altitude within reach of sea mist. Gayella valparadisaea is a rare plant, listed as Endangered (EN) in Chile, but it does not occur in any protected area. Considering the isolated phylogenetic position of this old lineage, we urge the Chilean authorities to increase the efforts towards protection of this species.
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| 4. |
- Swenson, Ulf, 1959-, et al.
(författare)
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Reassessment of generic boundaries in Neotropical Chrysophylloideae (Sapotaceae) : Eleven reinstated genera and narrowed circumscriptions of Chrysophyllum and Pouteria
- 2023
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Ingår i: Taxon. - : John Wiley & Sons. - 0040-0262 .- 1996-8175. ; 72:2, s. 307-359
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Tidskriftsartikel (refereegranskat)abstract
- Classifications of the pantropical plant family Sapotaceae based solely on morphology have historically recognized between 125 and 53 genera. Phylogenetic analyses using molecular data have repeatedly demonstrated that broad concepts of two large genera belonging to subfamily Chrysophylloideae, Chrysophyllum and Pouteria, are untenable and their narrowed delimitations have restricted them to the Neotropics. A recent phylogenetic study proposed further amendments by resurrecting the genera Achrouteria, Cornuella, Lucuma, Martiusella, Nemaluma, Prieurella and Ragala, and questioned the status of three generally accepted genera, Chromolucuma, Pradosia and Sarcaulus. We test this suggested classification using expanded sampling that comprises 122 terminals, including material of 29 of the 34 name-bringing species for generic names historically regarded as synonyms of Chrysophyllum and Pouteria. We used sequence data from ribosomal nrDNA (ETS, ITS), the nuclear gene RPB2, two cpDNA spacers (petN-psbM, trnH-psbA), and indel information to estimate phylogenetic relationships in a Bayesian framework using BEAST. All sequences were newly realigned to test reproducibility, and 26 morphological characters were mapped on the resulting tree. Our analyses recovered three African genera embedded within a large Neotropical clade of Chrysophylloideae. We found strong support for the reinstatement of the seven genera listed above as well as for four other genera, viz. Chloroluma, Englerella, Labatia, and Peteniodendron. This subsequently leads to further amendments of Chrysophyllum and Pouteria, which are now limited to include 25-30 and 7 species, respectively. However, one clade that includes many name-bringing lineages largely corresponds to Pouteria s.l., a group that needs further phylogenetic research to unravel relationships and generic limits. The hypothesis that Chrysophyllum cuneifolium had an inter-continental hybrid origin involving genomes from Africa and South America is rejected because it is shown to have been based on erroneous results obtained from a contaminated DNA aliquot. A total of 73 genera are currently recognised in Sapotaceae, 21 of which are Neotropical members of Chrysophylloideae. We update the nomenclature and synonymy of 75 species, make 36 new combinations, and designate lectotypes for 31 names.
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