| 1. |
- Cossarizza, A., et al.
(författare)
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Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)
- 2019
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Ingår i: European Journal of Immunology. - : Wiley. - 0014-2980 .- 1521-4141. ; 49:10, s. 1457-1973
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Tidskriftsartikel (refereegranskat)abstract
- These guidelines are a consensus work of a considerable number of members of the immunology and flow cytometry community. They provide the theory and key practical aspects of flow cytometry enabling immunologists to avoid the common errors that often undermine immunological data. Notably, there are comprehensive sections of all major immune cell types with helpful Tables detailing phenotypes in murine and human cells. The latest flow cytometry techniques and applications are also described, featuring examples of the data that can be generated and, importantly, how the data can be analysed. Furthermore, there are sections detailing tips, tricks and pitfalls to avoid, all written and peer-reviewed by leading experts in the field, making this an essential research companion.
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| 2. |
- Gadalla, Shahinaz M, et al.
(författare)
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Outcomes of allogeneic hematopoietic cell transplant in patients with dyskeratosis congenita.
- 2013
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Ingår i: Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation. - : Elsevier BV. - 1523-6536. ; 19:8, s. 1238-1243
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Tidskriftsartikel (refereegranskat)abstract
- We describe outcomes after allogeneic transplantation in 34 patients with dyskeratosis congenita transplanted between 1981 and 2009. The median age at transplantation was 13 years (range 2 - 35). Approximately 50% of transplants were from related donors. Bone marrow was the predominant source of stem cells (n=24/34). The day-28 probability of neutrophil recovery was 73% and the day-100 platelet recovery was 72%. The day-100 probability of grade II-IV acute GVHD and the 3-year probability of chronic GVHD were 24% and 37%, respectively. The 10-year probability of survival was 30%; 14 patients were alive at last follow-up. Ten deaths occurred within 4 months from transplantation due to graft failure (n=6) or other transplant-related complications; 9 of these patients had been transplanted from mismatched related or from unrelated donors. Another 10 deaths occurred after 4 months; 6 of them occurred more than 5 years from transplantation, 4 of these were attributed to pulmonary failure. Transplant-regimen intensity and transplants from mismatched related or unrelated donors were associated with early mortality. Transplantation of grafts from HLA-matched siblings with cyclophosphamide-containing non-radiation regimens was associated with early low toxicity. Late mortality was attributed mainly to pulmonary complications and likely related to the underlying disease.
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| 3. |
- Leung, Wing -Y. H., et al.
(författare)
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Sensitivity of a continental night-time stratocumulus-topped boundary layer to varying environmental conditions
- 2016
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Ingår i: Quarterly Journal of the Royal Meteorological Society. - : Wiley. - 0035-9009 .- 1477-870X. ; 142:700, s. 2911-2924
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Tidskriftsartikel (refereegranskat)abstract
- Large-eddy simulation of a nocturnal stratocumulus-topped boundary layer in a continental midlatitude environment has been performed to examine the sensitivity of the cloud to a number of different environmental parameters. The simulations showed that the stratocumulus cloud was strongly affected by the presence of an overlying free tropospheric cirrus cloud (FTC), in agreement with previous studies of marine nighttime stratocumulus. When introducing an FTC with an optical thickness of 2, stratocumulus liquid water path decreased by 30%. Enhancing the optical thickness of the FTC to 8 further decreased the liquid water path by almost 10%. The presence of an FTC decreased the cloud-top radiative cooling which decreased the turbulent mixing in the boundary layer, so that the liquid water content and cloud depth were reduced. The sensitivity of the stratocumulus cloud to an overlying FTC was found to be affected by the moisture content in the free troposphere. When a clear positive or negative moisture gradient above the inversion was imposed, and an overlying FTC with an optical thickness of 8 was introduced, the stratocumulus cloud LWP decreased by more than 40%. Furthermore, the effect of changes in free tropospheric moisture content and an overlying FTC on the stratocumulus cloud properties was found to be nonlinear; the combined response was in general weaker than the two responses added together. The modeled response to changes in cloud condensation nuclei (CCN) concentrations was found to be non-significant, unless the CCN concentrations were so low that drizzle was induced (similar to 50 cm(-3))
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| 4. |
- Burke, Michael J., et al.
(författare)
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Transplant Outcomes for Children with T Cell Acute Lymphoblastic Leukemia in Second Remission : A Report from the Center for International Blood and Marrow Transplant Research
- 2015
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Ingår i: Biology of blood and marrow transplantation. - : Elsevier BV. - 1083-8791 .- 1523-6536. ; 21:12, s. 2154-2159
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Tidskriftsartikel (refereegranskat)abstract
- Survival for children with relapsed T cell acute lymphoblastic leukemia (T-ALL) is poor when treated with chemotherapy alone, and outcomes after allogeneic hematopoietic cell transplantation (HCT) is not well described. Two hundred twenty-nine children with T-ALL in second complete remission (CR2) received an HCT after myeloablative conditioning between 2000 and 2011 and were reported to the Center for International Blood and Marrow Transplant Research. Median age was 10 years (range, 2 to 18). Donor source was umbilical cord blood (26%), matched sibling bone marrow (38%), or unrelated bone marrow/peripheral blood (36%). Acute (grades II to IV) and chronic graft-versus-host disease occurred in, respectively, 35% (95% confidence interval [CI], 27% to 45%) and 26% (95% CI, 20% to 33%) of patients. Transplant-related mortality at day 100 and 3-year relapse rates were 13% (95% CI, 9% to 18%) and 30% (95% CI, 24% to 37%), respectively. Three-year overall survival and disease-free survival rates were 48% (95% CI, 41% to 55%) and 46% (95% CI, 39% to 52%), respectively. In multivariate analysis, patients with bone marrow relapse, with or without concurrent extramedullary relapse before HCT, were most likely to relapse (hazard ratio, 3.94; P =.005) as compared with isolated extramedullary disease. In conclusion, HCT for pediatric T-ALL in CR2 demonstrates reasonable and durable outcomes, and consideration for HCT is warranted. (c) 2015 American Society for Blood and Marrow Transplantation.
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| 5. |
- Smith, E. A., et al.
(författare)
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Transitioning from CRD to CDRD in Bayesian retrieval of rainfall from satellite passive microwave measurements : Part 3 - Identification of optimal meteorological tags
- 2013
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Ingår i: Natural hazards and earth system sciences. - : Copernicus GmbH. - 1561-8633 .- 1684-9981. ; 13:5, s. 1185-1208
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Tidskriftsartikel (refereegranskat)abstract
- In the first two parts of this study we have presented a performance analysis of our new Cloud Dynamics and Radiation Database (CDRD) satellite precipitation retrieval algorithm on various convective and stratiform rainfall case studies verified with precision radar ground truth data, and an exposition of the algorithm's detailed design in conjunction with a proof-of-concept analysis vis-a-vis its theoretical underpinnings. In this third part of the study, we present the underlying analysis used to identify what we refer to as the optimal metrological and geophysical tags, which are the optimally effective atmospheric and geographic parameters that are used to refine the selection of candidate microphysical profiles used for the Bayesian retrieval. These tags enable extending beyond the conventional Cloud Radiation Database (CRD) algorithm by invoking meteorological-geophysical guidance, drawn from a simulated database, which affect and are in congruence with the observed precipitation states. This is guidance beyond the restrictive control provided by only simulated radiative transfer equation (RTE) model-derived database brightness temperature (TB) vector proximity information in seeking to relate physically consistent precipitation profile solutions to individual satellite-observed TB vectors. The first two parts of the study have rigorously demonstrated that the optimal tags effectively mitigate against solution ambiguity, where use of only a CRD framework (TB guidance only) leads to pervasive non-uniqueness problems in finding rainfall solutions. Alternatively, a CDRD framework (TB + tag guidance) mitigates against non-uniqueness problems through improved constraints. It remains to show how these optimal tags are identified. By use of three statistical analysis procedures applied to a database from 120 North American atmospheric simulations of precipitating storms (independent of the 60 simulations for the European-Mediterranean basin region used in the Parts 1 and 2 studies), we examine 25 separate dynamical-thermodynamical-hydrological (DST) and geophysical parameters for their relationships to rainfall variables - specifically, surface rain rate and columnar liquid/ice/total water paths of precipitating hydrometeors. The analysis identifies seven optimal parameter tags which exceed all others in the strengths of their correlations to the precipitation variables but also have observational counterparts in the operational global forecast model outputs. The seven optimal tags are (1 and 2) vertical velocities at 700 and 500 hPa; (3) equivalent potential temperature at surface; (4) convective available potential energy; (5) moisture flux 50 hPa above surface; (6) freezing level height; and (7) terrain height, i.e., surface height.
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