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| 2. |
- Leymarie, N., et al.
(författare)
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Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: The ABRF Glycoprotein Research Multi-Institutional Study 2012
- 2013
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Ingår i: Molecular & Cellular Proteomics. - 1535-9476. ; 12:10, s. 2935-2951
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Tidskriftsartikel (refereegranskat)abstract
- One of the principal goals of glycoprotein research is to correlate glycan structure and function. Such correlation is necessary in order for one to understand the mechanisms whereby glycoprotein structure elaborates the functions of myriad proteins. The accurate comparison of glycoforms and quantification of glycosites are essential steps in this direction. Mass spectrometry has emerged as a powerful analytical technique in the field of glycoprotein characterization. Its sensitivity, high dynamic range, and mass accuracy provide both quantitative and sequence/structural information. As part of the 2012 ABRF Glycoprotein Research Group study, we explored the use of mass spectrometry and ancillary methodologies to characterize the glycoforms of two sources of human prostate specific antigen (PSA). PSA is used as a tumor marker for prostate cancer, with increasing blood levels used to distinguish between normal and cancer states. The glycans on PSA are believed to be biantennary N-linked, and it has been observed that prostate cancer tissues and cell lines contain more antennae than their benign counterparts. Thus, the ability to quantify differences in glycosylation associated with cancer has the potential to positively impact the use of PSA as a biomarker. We studied standard peptide-based proteomics/glycomics methodologies, including LC-MS/MS for peptide/glycopeptide sequencing and label-free approaches for differential quantification. We performed an interlaboratory study to determine the ability of different laboratories to correctly characterize the differences between glycoforms from two different sources using mass spectrometry methods. We used clustering analysis and ancillary statistical data treatment on the data sets submitted by participating laboratories to obtain a consensus of the glycoforms and abundances. The results demonstrate the relative strengths and weaknesses of top-down glycoproteomics, bottom-up glycoproteomics, and glycomics methods. T6G 2G2, Canada. [Cipollo, John F.; An, Yanming] US FDA, Ctr Biol Evaluat & Res, Bethesda, MD 20993 USA. [Desaire, Heather; Go, Eden P.] Univ Kansas, Lawrence, KS 66045 USA. [Goldman, Radoslav; Pompach, Petr; Sanda, Miloslav] Georgetown Univ, Dept Oncol, Washington, DC [Halim, Adnan; Larson, Goran; Nilsson, Jonas] Univ Gothenburg, Sahlgrenska Acad, Dept Clin Chem & [Hensbergen, Paul J.; Wuhrer, Manfred] Leiden Univ, Med Ctr, Biomol Mass Spectrometry Unit, NL- [Jabs, Wolfgang; Marx, Kristina; Resemann, Anja; Schweiger-Hufnagel, Ulrike; Suckau, Detlev] Bruker [Ly, Mellisa; Staples, Gregory O.] Agilent Technol, Agilent Labs, Santa Clara, CA 95051 USA. [Mechref, Yehia; Song, Ehwang] Texas Tech Univ, Dept Chem & Biochem, Lubbock, TX 79409 USA. [Nyalwidhe, Julius O.; Watson, Megan] Eastern Virginia Med Sch, Leroy T Canoles Jr Canc Res Ctr, Dept [Packer, Nicolle H.; Thaysen-Andersen, Morten] Macquarie Univ, Dept Chem & Biomol Sci, Biomol [Sihlbom, Carina] Gothenburg Univ, Prote Core Facil, Gothenburg, Sweden. [Tang, Haixu] Indiana Univ, Sch Informat, Bloomington, IN 47405 USA. [Valmuv, Leena] Finnish Red Cross Blood Serv, Helsinki 00310, Finland. [Wada, Yoshinao] Osaka Med Ctr Maternal & Child Hlth, Res Inst, Izumi Ku, Osaka 5941101, Japan.
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| 4. |
- Shubina, Tatiana, 1950-, et al.
(författare)
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Optical properties of InN related to surface plasmons
- 2005
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Ingår i: Physica Status Solidi (a) applications and materials science. - : Wiley. - 1862-6300 .- 1862-6319. ; 202:14, s. 2633-2641
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Tidskriftsartikel (refereegranskat)abstract
- We report on the complex nature of infrared luminescence and absorption in InN films, which cannot be entirely explained by the concept of a conventional narrow-gap semiconductor. In particular, it concerns the detection of peaks near absorption edges by both thermally detected optical absorption and photoluminescence excitation spectroscopy and the observation of extraordinarily strong resonant enhancement of emission. To describe the experimental data a model is proposed, which takes into account surface plasmons in metal-like inclusions, modifying the optical properties of InN. © 2005 WILEY-VCH Verlag GmbH & Co. KGaA,.
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| 6. |
- Shubina, Tatiana, et al.
(författare)
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Surface-plasmon resonances in indium nitride with metal-enriched nano-particles
- 2006
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Ingår i: Journal of Crystal Growth. - : Elsevier BV. - 0022-0248 .- 1873-5002. ; 288:2, s. 230-235
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Tidskriftsartikel (refereegranskat)abstract
- Plasmonic resonances in In-enriched nano-particles, spontaneously formed during growth, can dramatically modify optical properties of InN. Experimental support for this is provided from detailed studies of absorption and infrared emission in InN. In particular, thermally detected optical absorption and photoluminescence excitation spectroscopy reveal a peak below the region of strong absorption in InN. A higher-energy part of the infrared emission having a noticeable p-polarization is markedly enhanced with excitation along the surface. These peculiarities are discussed in terms of the Mie resonances, arising in metallic spheroids with different aspect ratio, and their coupling with recombining states, whose strength depends on energy separation between the states and the resonances. © 2005 Elsevier B.V. All rights reserved.
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| 7. |
- Shubina, T V, et al.
(författare)
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Delay and distortion of slow light pulses by excitons in ZnO
- 2011
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Ingår i: Physical Review B. Condensed Matter and Materials Physics. - : American Physical Society. - 1098-0121 .- 1550-235X. ; 84:7, s. 075202-
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Tidskriftsartikel (refereegranskat)abstract
- istortion of light pulses in ZnO caused by both bound and free excitons is demonstrated by time-of-flight spectroscopy. Numerous lines of bound excitons dissect the pulse spectrum and induce slowdown of light propagation around the dips. Exciton-polariton resonances determine the overall pulse delay, which approaches 1.6 ns at 3.374 eV for a 0.3 mm propagation length, as well as the pulse curvature in the time-energy plane and its attenuation. Analysis of cw and time-resolved data yields the excitonic parameters inherent for bulk ZnO. A discrepancy is found between these bulk parameters and those given by surface-probing techniques.
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| 8. |
- Choubina, Tatiana, 1950-, et al.
(författare)
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Slow light in GaN
- 2008
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Ingår i: 16th Int. Symp. ¿Nanostructures: Physics and Technology,2008. ; , s. 257-
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Konferensbidrag (refereegranskat)
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| 9. |
- Choubina, Tatiana, 1950-, et al.
(författare)
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The slow light in GaN
- 2008
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Ingår i: ICPS2008,2008. ; , s. 647-
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Konferensbidrag (refereegranskat)
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| 10. |
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