| 1. |
- Lukmanov, Rustam A., et al.
(author)
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Chemical identification of microfossils from the 1.88-Ga Gunflint chert : Towards empirical biosignatures using laser ablation ionization mass spectrometer
- 2021
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In: Journal of Chemometrics. - : John Wiley & Sons. - 0886-9383 .- 1099-128X. ; 35:10
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Journal article (peer-reviewed)abstract
- In this contribution, we investigated the chemical composition of Precambrian microfossils from the Gunflint chert (1.88 Ga) using a miniature laser ablation ionization mass spectrometer (LIMS) developed for in situ space applications. Spatially resolved mass spectrometric imaging (MSI) and depth profiling resulted in the acquisition of 68,500 mass spectra. Using single mass unit spectral decomposition and multivariate data analysis techniques, we identified the location of aggregations of microfossils and surrounding inorganic host mineral. Our results show that microfossils have unique chemical compositions that can be distinguished from the inorganic chert with high fidelity. Chemical depth profiling results also show that with LIMS microprobe data, it is possible to identify chemical differences between individual microfossils, thereby providing new insights about nature of early life. Analysis of LIMS spectra acquired from the individual microfossils reveals complex mineralization, which can reflect the metabolic diversity of the Gunflint microbiome. An intensity-based machine learning model trained on LIMS Gunflint data might be applied for the future investigations of putative microfossils from silicified matrices, where morphological integrity of investigated structures is lost, and potentially in the investigation of rocks acquired from the Martian surface.
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| 2. |
- Lukmanov, Rustam A., et al.
(author)
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High Mass Resolution fs-LIMS Imaging and Manifold Learning Reveal Insight Into Chemical Diversity of the 1.88 Ga Gunflint Chert
- 2022
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In: Frontiers in space technologies. - : Frontiers Media S.A.. - 2673-5075. ; 3
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Journal article (peer-reviewed)abstract
- Extraction of useful information from unstructured, large and complex mass spectrometric signals is a challenge in many application fields of mass spectrometry. Therefore, new data analysis approaches are required to help uncover the complexity of such signals. In this contribution, we examined the chemical composition of the 1.88 Ga Gunflint chert using the newly developed high mass resolution laser ionization mass spectrometer (fs-LIMS-GT). We report results on the following: 1) mass-spectrometric multi-element imaging of the Gunflint chert sample; and 2) identification of multiple chemical entities from spatial mass spectrometric data utilizing nonlinear dimensionality reduction and spectral similarity networks. The analysis of 40 ' 000 mass spectra reveals the presence of chemical heterogeneity (seven minor compounds) and two large clusters of spectra registered from the organic material and inorganic host mineral. Our results show the utility of fs-LIMS imaging in combination with manifold learning methods in studying chemically diverse samples.
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| 3. |
- Lukmanov, Rustam A., et al.
(author)
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Multiwavelength Ablation/Ionization and Mass Spectrometric Analysis of 1.88 Ga Gunflint Chert
- 2022
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In: Astrobiology. - : Mary Ann Liebert. - 1531-1074 .- 1557-8070. ; 22:4, s. 369-386
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Journal article (peer-reviewed)abstract
- The investigation of chemical composition on planetary bodies without significant sample processing is of importance for nearly every mission aimed at robotic exploration. Moreover, it is a necessary tool to achieve the longstanding goal of finding evidence of life beyond Earth, for example, possibly preserved microbial remains within martian sediments. Our Laser Ablation Ionization Mass Spectrometer (LIMS) is a compact time-of-flight mass spectrometer intended to investigate the elemental, isotope, and molecular composition of a wide range of solid samples, including e.g., low bulk density organic remains in microfossils. Here, we present an overview of the instrument and collected chemical spectrometric data at the micrometer level from a Precambrian chert sample (1.88 Ga Gunflint Formation, Ontario, Canada), which is considered to be a martian analogue. Data were collected from two distinct zones-a silicified host area and a carbon-bearing microfossil assemblage zone. We performed these measurements using an ultrafast pulsed laser system (pulse width of similar to 180 fs) with multiple wavelengths (infrared [IR]-775 nm, ultraviolet [UV]-387 nm, UV-258 nm) and using a pulsed high voltage on the mass spectrometer to reveal small organic signals. We investigated (1) the chemical composition of the sample and (2) the different laser wavelengths' performance to provide chemical depth profiles in silicified media. Our key findings are as follows: (1) microfossils from the Gunflint chert reveal a distinct chemical composition compared with the host mineralogy (we report the identification of 24 elements in the microfossils); (2) detection of the pristine composition of microfossils and co-occurring fine chemistry (rare earth elements) requires utilization of the depth profiling measurement protocol; and (3) our results show that, for analysis of heterogeneous material from siliciclastic deposits, siliceous sinters, and cherts, the most suitable wavelength for laser ablation/Ionization is UV-258 nm.
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| 4. |
- Lukmanov, Rustam A., et al.
(author)
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On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry
- 2021
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In: Frontiers in Artificial Intelligence. - : Frontiers Media S.A.. - 2624-8212. ; 4
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Journal article (peer-reviewed)abstract
- In this contribution, we present results of non-linear dimensionality reduction and classification of the fs laser ablation ionization mass spectrometry (LIMS) imaging dataset acquired from the Precambrian Gunflint chert (1.88 Ga) using a miniature time-of-flight mass spectrometer developed for in situ space applications. We discuss the data generation, processing, and analysis pipeline for the classification of the recorded fs-LIMS mass spectra. Further, we define topological biosignatures identified for Precambrian Gunflint microfossils by projecting the recorded fs-LIMS intensity space into low dimensions. Two distinct subtypes of microfossil-related spectra, a layer of organic contamination and inorganic quartz matrix were identified using the fs-LIMS data. The topological analysis applied to the fs-LIMS data allows to gain additional knowledge from large datasets, formulate hypotheses and quickly generate insights from spectral data. Our contribution illustrates the utility of applying spatially resolved mass spectrometry in combination with topology-based analytics in detecting signatures of early (primitive) life. Our results indicate that fs-LIMS, in combination with topological methods, provides a powerful analytical framework and could be applied to the study of other complex mineralogical samples.
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| 5. |
- Tulej, Marek, et al.
(author)
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Determination of the microscopic mineralogy of inclusion in an amygdaloidal pillow basalt by fs-LIMS
- 2021
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In: Journal of Analytical Atomic Spectrometry. - : Royal Society of Chemistry. - 0267-9477 .- 1364-5544. ; 36:1, s. 80-91
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Journal article (peer-reviewed)abstract
- We present chemical depth profiling studies on mineralogical inclusions embedded in amygdale calcium carbonate by our Laser Ablation Ionisation Mass Spectrometer designed for in situ space research. An IR femtosecond laser ablation is employed to generate ions that are recorded by a miniature time-of-flight mass spectrometer. The mass spectra were measured at several locations on the sample surface and yield chemical depth profiles along the depth length of about 30 mu m. The presence of oxides and sulphides within inclusion material allows us to derive elemental abundance calibration factors (relative sensitivity coefficients, RSCs) for major and minor elements. These are obtained from the atomic intensity correlations performed on the depth profiling data. With the RSCs corrections the quantitative analysis of more complex mineralogical phases within the inclusion is conducted by correlating atomic abundance fractions in ternary diagrams, typically used in geology. The spatial resolution of the depth profiles was sufficient to study chemically distinct micrometre-sized objects, such as mineralogical grains and thin layers of minerals including micrometre-sized filamentous structures. The method presented here is well-suited for the quantitative chemical analyses of highly heterogeneous materials where the ablation condition can vary locally with the material composition making the application of standard reference materials less accurate. The presented method is developed to distinguish between abiotic and biological material while searching for micrometre-sized extinct or extent life forms on the surfaces of Solar System bodies.
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| 6. |
- Tulej, Marek, et al.
(author)
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Isotope abundance ratio measurements using femtosecond laser ablation ionization mass spectrometry
- 2020
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In: Journal of Mass Spectrometry. - : Wiley. - 1076-5174 .- 1096-9888. ; 55:12
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Journal article (peer-reviewed)abstract
- Accurate isotope ratio measurements are of high importance in various scientific fields, ranging from radio isotope geochronology of solids to studies of element isotopes fractionated by living organisms. Instrument limitations, such as unresolved isobaric inferences in the mass spectra, or cosampling of the material of interest together with the matrix material may reduce the quality of isotope measurements. Here, we describe a method for accurate isotope ratio measurements using our laser ablation ionization time‐of‐flight mass spectrometer (LIMS) that is designed for in situ planetary research. The method is based on chemical depth profiling that allows for identifying micrometer scale inclusions embedded in surrounding rocks with different composition inside the bulk of the sample. The data used for precise isotope measurements are improved using a spectrum cleaning procedure that ensures removal of low quality spectra. Furthermore, correlation of isotopes of an element is used to identify and reject the data points that, for example, do not belong to the species of interest. The measurements were conducted using IR femtosecond laser irradiation focused on the sample surface to a spot size of ~12 μm. Material removal was conducted for a predefined number of laser shots, and time‐of‐flight mass spectra were recorded for each of the ablated layers. Measurements were conducted on NIST SRM 986 Ni isotope standard, trevorite mineral, and micrometer‐sized inclusions embedded in aragonite. Our measurements demonstrate that element isotope ratios can be measured with accuracies and precision at the permille level, exemplified by the analysis of B, Mg, and Ni element isotopes. The method applied will be used for in situ investigation of samples on planetary surfaces, for accurate quantification of element fractionation induced by, for example, past or present life or by geochemical processes.
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