| 1. |
- Dormann, Carsten F., et al.
(författare)
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Biotic interactions in species distribution modelling : 10 questions to guide interpretation and avoid false conclusions
- 2018
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Ingår i: Global Ecology and Biogeography. - : Wiley. - 1466-822X .- 1466-8238. ; 27:9, s. 1004-1016
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Tidskriftsartikel (refereegranskat)abstract
- Aim: Recent studies increasingly use statistical methods to infer biotic interactions from co‐occurrence information at a large spatial scale. However, disentangling biotic interactions from other factors that can affect co‐occurrence patterns at the macroscale is a major challenge.Approach: We present a set of questions that analysts and reviewers should ask to avoid erroneously attributing species association patterns to biotic interactions. Our questions relate to the appropriateness of data and models, the causality behind a correlative signal, and the problems associated with static data from dynamic systems. We summarize caveats reported by macroecological studies of biotic interactions and examine whether conclusions on the presence of biotic interactions are supported by the modelling approaches used.Findings: Irrespective of the method used, studies that set out to test for biotic interactions find statistical associations in species’ co‐occurrences. Yet, when compared with our list of questions, few purported interpretations of such associations as biotic interactions hold up to scrutiny. This does not dismiss the presence or importance of biotic interactions, but it highlights the risk of too lenient interpretation of the data. Combining model results with information from experiments and functional traits that are relevant for the biotic interaction of interest might strengthen conclusions.Main conclusions: Moving from species‐ to community‐level models, including biotic interactions among species, is of great importance for process‐based understanding and forecasting ecological responses. We hope that our questions will help to improve these models and facilitate the interpretation of their results. In essence, we conclude that ecologists have to recognize that a species association pattern in joint species distribution models will be driven not only by real biotic interactions, but also by shared habitat preferences, common migration history, phylogenetic history and shared response to missing environmental drivers, which specifically need to be discussed and, if possible, integrated into models.
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| 2. |
- Lehsten, Veiko, et al.
(författare)
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LPJ-GM 1.0 : Simulating migration efficiently in a dynamic vegetation model
- 2019
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Ingår i: Geoscientific Model Development. - : Copernicus GmbH. - 1991-959X .- 1991-9603. ; 12:3, s. 893-908
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Tidskriftsartikel (refereegranskat)abstract
- Dynamic global vegetation models are a common tool to assess the effect of climate and land use change on vegetation. Though most applications of dynamic global vegetation models use plant functional types, some also simulate species occurrences. While the current development aims to include more processes, e.g. the nitrogen cycle, the models still typically assume an ample seed supply allowing all species to establish once the climate conditions are suitable. Pollen studies have shown that a number of plant species lag behind in occupying climatological suitable areas (e.g. after a change in the climate) as they need to arrive at and establish in the newly suitable areas. Previous attempts to implement migration in dynamic vegetation models have allowed for the simulation of either only small areas or have been implemented as a post-process, not allowing for feedbacks within the vegetation. Here we present two novel methods simulating migrating and interacting tree species which have the potential to be used for simulations of large areas. Both distribute seeds between grid cells, leading to individual establishment. The first method uses an approach based on fast Fourier transforms, while in the second approach we iteratively shift the seed production matrix and disperse seeds with a given probability. While the former method is computationally faster, it does not allow for modification of the seed dispersal kernel parameters with respect to terrain features, which the latter method allows. We evaluate the increase in computational demand of both methods. Since dispersal acts at a scale no larger than 1 km, all dispersal simulations need to be performed at maximum at that scale. However, with the currently available computational power it is not feasible to simulate the local vegetation dynamics of a large area at that scale. We present an option to decrease the required computational costs through a reduction in the number of grid cells for which the local dynamics are simulated only along migration transects. Evaluation of species patterns and migration speeds shows that simulating along transects reduces migration speed, and both methods applied on the transects produce reasonable results. Furthermore, using the migration transects, both methods are sufficiently computationally efficient to allow for large-scale DGVM simulations with migration.
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| 3. |
- Zani, Deborah, et al.
(författare)
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Climate and dispersal limitation drive tree species range shifts in post-glacial Europe : results from dynamic simulations
- 2023
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Ingår i: Frontiers in Ecology and Evolution. - : Frontiers Media SA. - 2296-701X. ; 11
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Tidskriftsartikel (refereegranskat)abstract
- Introduction: The ability of species to colonize newly suitable habitats under rapid climate change can be constrained by migration processes, resulting in a shift of the leading edge lagging behind the ameliorating climate, i.e. migration lag. The importance and extent of such migration lags during the forest expansion after the Last Glacial Maximum (LGM) are still debated. Similarly, the relative importance of the main drivers of post-glacial vegetation dynamics (temperature, dispersal limitation, and competition) is still discussed in the literature. Methods: We used the dynamic global vegetation model LPJ-GM 2.0 to reconstruct the range shifts of 16 competing major European tree species after the LGM (18.5 ka BP) until recent times (0 ka BP). We simulated two dispersal modes by allowing free establishment whenever the climatic conditions suited the species (free dispersal), or by accounting for migration processes in the simulated vegetation dynamics (dispersal limitation). We then calculated thermal and range shift velocities, competition at establishment, thermal and dispersal lags for each species and dispersal mode. Finally, we compared our simulated range shift velocities with pollen-derived migration rates. Results: The simulation assuming limited dispersal resulted in more accurate migration rates as compared to pollen-derived migration rates and spreading patterns. We found no marked migration lags in the post-glacial establishment of pioneer species (Pinus sylvestris and Betula pubescens). Under the free dispersal mode, the remaining temperate species expanded rapidly and almost synchronously across central Europe upon climate warming (Bølling-Allerød interstadial). Differently, the northward spread of temperate species simulated under dispersal limitation happened mainly during the Holocene and in successive waves, with late spreaders (e.g. Fraxinus excelsior) experiencing multi-millennial dispersal lags and higher competition. Discussion: Our simulation under dispersal constraints suggests that the post-glacial tree expansion in Europe was mainly driven by species-specific thermal requirements and dispersal capacity, which in turn affected the order of taxa establishment and thus the degree of competition. Namely, taxa with less cold-tolerance and relatively low dispersal ability experienced the highest migration lags, whereas the establishment of pioneer species was mostly in equilibrium with the climate.
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| 4. |
- Zani, Deborah, et al.
(författare)
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The role of dispersal limitation in the forest biome shifts of Europe in the last 18,000 years
- 2024
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Ingår i: Journal of Biogeography. - : Wiley. - 0305-0270 .- 1365-2699.
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Tidskriftsartikel (refereegranskat)abstract
- Aim: How the ability of plants to move towards newly favourable habitats (dispersal limitation) impacts the change of biome distribution and transition under fast climate warming is still debated. Analysing vegetation change in the past may help to clarify the relative importance of underlying ecological processes such as climate, biotic interactions, and dispersal. In this study, we investigated how dispersal limitation affected the distribution of European forests in the last 18,000 years. Location: Southern and Central Europe. Taxon: Spermatophyta. Methods: Using the LPJ-GM 2.0 model (an extension of LPJ-GUESS), we simulated European vegetation from the end of the Last Glacial Maximum (18.5 ka) to the current time (0 ka). Using biome reconstructions from pollen data as reference, we compared the performance of two dispersal modes: with no migration constraints or seed limitation (free dispersal mode), and with plant establishment depending on seed dynamics and dispersal (dispersal limitation mode). Results: The model run, including migration processes, was better at capturing the post-glacial expansion of European temperate forests (and the longer persistence of boreal forests) than the setting assuming free dispersal, especially during periods of rapid warming. This suggests that a number of (temperate) tree taxa experienced delayed occupancy of climatically suitable habitats due to a limited dispersal capacity, i.e., post-glacial migration lags. Main Conclusions: Our results show that including migration processes in model simulations allows for more realistic reconstructions of forest patterns under rapid climate change, with consequences for future projections of carbon sequestration and climate reconstructions with vegetation feedback, assisted migration and forest conservation.
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| 5. |
- Zani, Deborah, et al.
(författare)
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Tree migration in the dynamic, global vegetation model LPJ-GM 1.1 : efficient uncertainty assessment and improved dispersal kernels of European trees
- 2022
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Ingår i: Geoscientific Model Development. - : Copernicus GmbH. - 1991-959X .- 1991-9603. ; 15:12, s. 4913-4940
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Tidskriftsartikel (refereegranskat)abstract
- The prediction of species geographic redistribution under climate change (i.e. range shifts) has been addressed by both experimental and modelling approaches and can be used to inform efficient policy measures on the functioning and services of future ecosystems. Dynamic global vegetation models (DGVMs) are considered state-of-the art tools to understand and quantify the spatio-temporal dynamics of ecosystems at large scales and their response to changing environments. They can explicitly include local vegetation dynamics relevant to migration (establishment, growth, seed (propagule) production), species-specific dispersal abilities and the competitive interactions with other species in the new environment. However, the inclusion of more detailed mechanistic formulations of range shift processes may also widen the overall uncertainty of the model. Thus, a quantification of these uncertainties is needed to evaluate and improve our confidence in the model predictions. In this study, we present an efficient assessment of parameter and model uncertainties combining low-cost analyses in successive steps: local sensitivity analysis, exploration of the performance landscape at extreme parameter values, and inclusion of relevant ecological processes in the model structure. This approach was tested on the newly implemented migration module of the state-of-the-art DGVM LPJ-GM, focusing on European forests. Estimates of post-glacial migration rates obtained from pollen and macrofossil records of dominant European tree taxa were used to test the model performance. The results indicate higher sensitivity of migration rates to parameters associated with the dispersal kernel (dispersal distances and kernel shape) compared to plant traits (germination rate and maximum fecundity) and highlight the importance of representing rare long-distance dispersal events via fat-tailed kernels. Overall, the successful parametrization and model selection of LPJ-GM will allow plant migration to be simulated with a more mechanistic approach at larger spatial and temporal scales, thus improving our efforts to understand past vegetation dynamics and predict future range shifts in a context of global change.
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