| 1. |
-
- 2019
-
Tidskriftsartikel (refereegranskat)
|
|
| 2. |
- Weinstein, John N., et al.
(författare)
-
The cancer genome atlas pan-cancer analysis project
- 2013
-
Ingår i: Nature Genetics. - : Springer Science and Business Media LLC. - 1061-4036 .- 1546-1718. ; 45:10, s. 1113-1120
-
Forskningsöversikt (refereegranskat)abstract
- The Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large numbers of human tumors to discover molecular aberrations at the DNA, RNA, protein and epigenetic levels. The resulting rich data provide a major opportunity to develop an integrated picture of commonalities, differences and emergent themes across tumor lineages. The Pan-Cancer initiative compares the first 12 tumor types profiled by TCGA. Analysis of the molecular aberrations and their functional roles across tumor types will teach us how to extend therapies effective in one cancer type to others with a similar genomic profile. © 2013 Nature America, Inc. All rights reserved.
|
|
| 3. |
- Nie, Wei, et al.
(författare)
-
NO at low concentration can enhance the formation of highly oxygenated biogenic molecules in the atmosphere
- 2023
-
Ingår i: Nature Communications. - Malmö : IVL Svenska Miljöinstitutet AB. - 2041-1723. ; 14:1
-
Tidskriftsartikel (refereegranskat)abstract
- The interaction between nitrogen monoxide (NO) and organic peroxy radicals (RO2) greatly impacts the formation of highly oxygenated organic molecules (HOM), the key precursors of secondary organic aerosols. It has been thought that HOM production can be significantly suppressed by NO even at low concentrations. Here, we perform dedicated experiments focusing on HOM formation from monoterpenes at low NO concentrations (0 – 82 pptv). We demonstrate that such low NO can enhance HOM production by modulating the RO2 loss and favoring the formation of alkoxy radicals that can continue to autoxidize through isomerization.These insights suggest that HOM yields from typical boreal forest emissions can vary between 2.5%-6.5%, and HOM formation will not be completely inhibited even at high NO concentrations. Our findings challenge the notion that NO monotonically reduces HOM yields by extending the knowledge of RO2-NO interactions to the low-NO regime. This represents a major advance towards an accurate assessment of HOM budgets, especially in low-NO environments, which prevails in the preindustrial atmosphere, pristine areas, and the upper boundary layer.
|
|
| 4. |
- Yang, Xigui, et al.
(författare)
-
Polarized Raman study of aligned multiwalled carbon nanotubes arrays under high pressure
- 2015
-
Ingår i: The Journal of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 119:49, s. 27759-27767
-
Tidskriftsartikel (refereegranskat)abstract
- Tuning the intertube interaction and the topological structure of carbon nanotubes by the application of pressure may obviously affect their properties such as optical and electronic properties. However, characterizing such changes is still challenging. Here, we performed polarized Raman scattering studies on aligned multiwalled carbon nanotube arrays (MWNTAs). Unlike researchers from the previous literature, we found that the MWNTAs exhibit a polarization dependence similar to that of isolated single walled carbon nanotubes at ambient conditions. Upon compression, the polarization dependence weakens gradually with increasing pressure up to ∼20 GPa, which has been discussed in terms of pressure-induced enhancement of intertube interactions. At around 20 GPa, the depolarization effect vanishes, which can be explained by the formation of interlinked sp3 bonding in the MWNTAs. Our results show that polarized Raman spectroscopy is an efficient method to explore not only intertube interaction but also structural transition changes in MWNTs, which overcome the difficulty that MWNTs have no obvious fingerprints like those of single-walled carbon nanotubes in the study of structural transformations.
|
|
| 5. |
- Zhang, Haiyan, et al.
(författare)
-
Facile preparation of glutathione-stabilized gold nanoclusters for selective determination of chromium (III) and chromium (VI) in environmental water samples
- 2013
-
Ingår i: Analytica Chimica Acta. - : Elsevier BV. - 0003-2670 .- 1873-4324. ; 770, s. 140-146
-
Tidskriftsartikel (refereegranskat)abstract
- A novel method for selective determination of Cr(III) and Cr(VI) in environmental water samples was developed based on target-induced fluorescence quenching of glutathione-stabilized gold nanoclusters (GSH-Au NCs). Fluorescent GSH-Au NCs were synthesized by a one-step approach employing GSH as reducing/protecting reagent. It was found that Cr(III) and Cr(VI) showed pH-dependent fluorescence quenching capabilities for GSH-Au NCs, and thus selective determination of Cr(III) and Cr(VI) could be achieved at different pHs. Addition of EDTA was able to effectively eliminate the interferences from other metal ions, leading to a good selectivity for this method. Under optimized conditions, Cr(III) showed a linear range of 25-3800 μg L(-1) and a limit of detection (LOD) of 2.5 μg L(-1). The Cr(VI) ion demonstrated a linear range of 5-500 μg L(-1) and LOD of 0.5 μg L(-1). The run-to-run relative standard deviations (n=5) for Cr(III) and Cr(VI) were 3.9% and 2.8%, respectively. The recoveries of Cr(III) and Cr(VI) in environmental water samples were also satisfactory (76.3-116%). This method, with its simplicity, low cost, high selectivity and sensitivity, could be used as a promising tool for chromium analysis in environmental water samples.
|
|
| 6. |
- Zhang, Haiyan, et al.
(författare)
-
Polychlorinated naphthalenes in sewage sludge from wastewater treatment plants in China
- 2014
-
Ingår i: Science of the Total Environment. - : Elsevier. - 0048-9697 .- 1879-1026. ; 490, s. 555-560
-
Tidskriftsartikel (refereegranskat)abstract
- Polychlorinated naphthalenes (PCNs) were nominated as persistent organic pollutants candidate in the Stockholm Convention in 2011. In this study, the profiles, concentrations and spatial distributions of PCNs were analyzed in 30 sewage sludge samples from wastewater treatment plants (WWTPs) in China. Concentrations of Σ75PCNs in sludge samples were in the range of 1.05-10.9 ng/g dry weight (dw) with a mean value of 3.98 ng/g dw. The predominant homologues in the sludge were mono- to tetra-CNs, accounting for approximately 85% of total PCNs. The total toxic equivalent quantities (TEQs) of dioxin-like PCN congeners ranged from 0.04 to 2.28 pg/g dw with a mean value of 0.36 pg/g dw, which were lower than the maximum permissible TEQ concentrations in sludge for land application in China. Levels of PCNs and TEQs in sludge were relatively higher in samples from highly industrialized and developed cities in eastern China, implying a possible link between PCN contamination and the local economic development, but more studies are warranted to corroborate this. Industrial sources might be important contributors of PCNs to sewage sludge in China.
|
|
| 7. |
- Bao, Haiyan, et al.
(författare)
-
Condition of setting surge tanks in hydropower plants - A review
- 2018
-
Ingår i: Renewable & sustainable energy reviews. - : Elsevier BV. - 1364-0321 .- 1879-0690. ; 81, s. 2059-2070
-
Forskningsöversikt (refereegranskat)abstract
- Hydropower plays an important role in the safe, stable and efficient operation of power systems, especially with current trends toward renewable energy systems. The total global potential of gross, technical, economic, and exploitable hydropower are still enormous in the future, and the developments of new hydropower stations (HPSs) are of great importance. For constructions of new HPSs, the condition of setting surge tanks (CSST) is crucial for various perspectives, e.g. safety, stability and economy of HPSs. In this review, the CSST are summarized and analyzed from the three aspects: regulation assurance, operation stability, and the regulation quality, with an aim of providing a reference and guidance for research and engineering applications regarding surge tanks. Upstream and downstream surge tanks in conventional HPSs and pumped storage power stations are all included. Moreover, a comprehensive comparison of CSST under different conditions is conducted. One of the main focuses of this review is on Chinese studies, for introducing many meaningful results written in Chinese to more readers all over the world.
|
|
| 8. |
- Birney, Ewan, et al.
(författare)
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
- 2007
-
Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 447:7146, s. 799-816
-
Tidskriftsartikel (refereegranskat)abstract
- We report the generation and analysis of functional data from multiple, diverse experiments performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE Project. These data have been further integrated and augmented by a number of evolutionary and computational analyses. Together, our results advance the collective knowledge about human genome function in several major areas. First, our studies provide convincing evidence that the genome is pervasively transcribed, such that the majority of its bases can be found in primary transcripts, including non-protein-coding transcripts, and those that extensively overlap one another. Second, systematic examination of transcriptional regulation has yielded new understanding about transcription start sites, including their relationship to specific regulatory sequences and features of chromatin accessibility and histone modification. Third, a more sophisticated view of chromatin structure has emerged, including its inter-relationship with DNA replication and transcriptional regulation. Finally, integration of these new sources of information, in particular with respect to mammalian evolution based on inter- and intra-species sequence comparisons, has yielded new mechanistic and evolutionary insights concerning the functional landscape of the human genome. Together, these studies are defining a path for pursuit of a more comprehensive characterization of human genome function.
|
|
| 9. |
- Fadil, Ahmed, et al.
(författare)
-
Fabrication and improvement of nanopillar InGaN/GaN light-emitting diodes using nanosphere lithography
- 2015
-
Ingår i: Journal of Nanophotonics. - 1934-2608. ; 9:1
-
Tidskriftsartikel (refereegranskat)abstract
- Surface-patterning technologies have enabled the improvement of currently existing light-emitting diodes (LEDs) and can be used to overcome the issue of low quantum efficiency of green GaN-based LEDs. We have applied nanosphere lithography to fabricate nanopillars on InGaN/GaN quantum-well LEDs. By etching through the active region, it is possible to improve both the light extraction efficiency and, in addition, the internal quantum efficiency through the effects of lattice strain relaxation. Nanopillars of different sizes are fabricated and analyzed using Raman spectroscopy. We have shown that nanopillar LEDs can be significantly improved by applying a combination of ion-damage curing techniques, including thermal and acidic treatment, and have analyzed their effects using x-ray photoelectron spectroscopy. (C) 2015 Society of Photo-Optical Instrumentation Engineers (SPIE)
|
|
| 10. |
- Gao, Xiang, et al.
(författare)
-
Cold adaptation in drylands: transcriptomic insights into cold-stressed Nostoc flagelliforme and characterization of a hypothetical gene with cold and nitrogen stress tolerance
- 2021
-
Ingår i: Environmental Microbiology. - : Wiley. - 1462-2920 .- 1462-2912. ; 23:2, s. 713-727
-
Tidskriftsartikel (refereegranskat)abstract
- Environmental stressors, especially low temperature, are very common on the earth's dryland systems. Terrestrial cyanobacteria have evolved with cold adaptability in addition to extreme dryness and high irradiation resistance. The dryland soil surface-dwelling species, Nostoc flagelliforme, serves as a potential model organism to gain insights into cyanobacterial cold adaptation. In this study, we performed transcriptomic analysis of N. flagelliforme samples in response to low temperature. The results revealed that the biological processes, such as terpenoid biosynthetic process, oxidoreductase activity, carbohydrate metabolism, biosynthesis of secondary metabolites, lipid and nitrogen metabolism, were significantly and dynamically changed during the cold stress. It was noteworthy that the transcription of the denitrification pathway for ammonia accumulation was enhanced, implying an importance for nitrogen utilization in stress resistance. In addition, characterization of a cold-responsive hypothetical gene csrnf1 found that it could greatly improve the cold-resistant performance of cells when it was heterologously expressed in transgenic Nostoc sp. PCC 7120. It was also found that csrnf1 transgenic strain exhibited resistance to nitrogen-deficient environmental stress. Considering that dryland cyanobacteria have to cope with low temperature on infertile soils, this study would enrich our understanding on the importance of multifunction of the genes for environmental cold adaptation in drylands.
|
|
