| 1. |
- Shumilova, Oleksandra, et al.
(författare)
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Simulating rewetting events in intermittent rivers and ephemeral streams : A global analysis of leached nutrients and organic matter
- 2019
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Ingår i: Global Change Biology. - : WILEY. - 1354-1013 .- 1365-2486. ; 25:5, s. 1591-1611
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Tidskriftsartikel (refereegranskat)abstract
- Climate change and human pressures are changing the global distribution and the extent of intermittent rivers and ephemeral streams (IRES), which comprise half of the global river network area. IRES are characterized by periods of flow cessation, during which channel substrates accumulate and undergo physico-chemical changes (preconditioning), and periods of flow resumption, when these substrates are rewetted and release pulses of dissolved nutrients and organic matter (OM). However, there are no estimates of the amounts and quality of leached substances, nor is there information on the underlying environmental constraints operating at the global scale. We experimentally simulated, under standard laboratory conditions, rewetting of leaves, riverbed sediments, and epilithic biofilms collected during the dry phase across 205 IRES from five major climate zones. We determined the amounts and qualitative characteristics of the leached nutrients and OM, and estimated their areal fluxes from riverbeds. In addition, we evaluated the variance in leachate characteristics in relation to selected environmental variables and substrate characteristics. We found that sediments, due to their large quantities within riverbeds, contribute most to the overall flux of dissolved substances during rewetting events (56%-98%), and that flux rates distinctly differ among climate zones. Dissolved organic carbon, phenolics, and nitrate contributed most to the areal fluxes. The largest amounts of leached substances were found in the continental climate zone, coinciding with the lowest potential bioavailability of the leached OM. The opposite pattern was found in the arid zone. Environmental variables expected to be modified under climate change (i.e. potential evapotranspiration, aridity, dry period duration, land use) were correlated with the amount of leached substances, with the strongest relationship found for sediments. These results show that the role of IRES should be accounted for in global biogeochemical cycles, especially because prevalence of IRES will increase due to increasing severity of drying events.
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| 2. |
- Albarracín, Lluís, et al.
(författare)
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Extending Modelling Activity Diagrams as a tool to characterise mathematical modelling processes
- 2019
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Ingår i: The Mathematics Enthusiast. - Missoula, United States : Montana Council of Teachers of Mathematics. - 1551-3440. ; 16:1
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Tidskriftsartikel (refereegranskat)abstract
- In this paper, we present a qualitative study in which we analyse the video-recordings of four groups of students solving Fermi Problems. Previous studies show that Secondary School students solve this type of problems using complex problem solving processes and developing mathematical models. In order to analyse the students’ problem solving processes, so-called Modelling Activity Diagrams were used. The results of the present study demonstrate that solving Fermi problems is a complex matter, and that some of the theoretical tools used in the field of Mathematical Education fail to adequately reflect this level of complexity. In addition, Modelling Activity Diagrams are presented as a more detailed analysis tool to characterise student choices and actions, as well as to make the structure of the Fermi problem addressed more visible.
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| 3. |
- Birney, Ewan, et al.
(författare)
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
- 2007
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 447:7146, s. 799-816
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Tidskriftsartikel (refereegranskat)abstract
- We report the generation and analysis of functional data from multiple, diverse experiments performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE Project. These data have been further integrated and augmented by a number of evolutionary and computational analyses. Together, our results advance the collective knowledge about human genome function in several major areas. First, our studies provide convincing evidence that the genome is pervasively transcribed, such that the majority of its bases can be found in primary transcripts, including non-protein-coding transcripts, and those that extensively overlap one another. Second, systematic examination of transcriptional regulation has yielded new understanding about transcription start sites, including their relationship to specific regulatory sequences and features of chromatin accessibility and histone modification. Third, a more sophisticated view of chromatin structure has emerged, including its inter-relationship with DNA replication and transcriptional regulation. Finally, integration of these new sources of information, in particular with respect to mammalian evolution based on inter- and intra-species sequence comparisons, has yielded new mechanistic and evolutionary insights concerning the functional landscape of the human genome. Together, these studies are defining a path for pursuit of a more comprehensive characterization of human genome function.
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| 4. |
- Casas-Ruiz, Joan P., et al.
(författare)
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A tale of pipes and reactors : Controls on the in-stream dynamics of dissolved organic matter in rivers
- 2017
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Ingår i: Limnology and Oceanography. - : Wiley. - 0024-3590 .- 1939-5590. ; 62, s. S85-S94
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Tidskriftsartikel (refereegranskat)abstract
- The potential for rivers to alter the flux of dissolved organic matter (DOM) from land to ocean is widely accepted. Yet anticipating when and where rivers behave as active reactors vs. passive pipes of DOM stands as a major knowledge gap in river biogeochemistry, resulting in uncertainties for global carbon models. Here, we investigate the controls on in-stream DOM dynamics by evaluating changes in DOM concentration and composition along several reaches of a medium-sized river network over one full hydrological year. Roughly half of the observations over time and space showed active reactor conditions and, among these, similar pro-portion of gains and losses was measured. High water residence times promoted the active over passive behavior of the reaches, while DOM properties and nitrate availability determined whether they supplied or removed DOM from the river. Among different DOM fractions, protein-like DOM both of terrestrial and aquatic origin seemed to drive bulk DOM patterns. Our study emphasizes the role of water residence time as a physical constraint for in-stream processes, and provides new insights into the key factors governing the net balance between in-stream gains and losses of DOM in rivers.
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| 5. |
- Casas-Ruiz, Joan P., et al.
(författare)
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Drought-induced discontinuities in the source and degradation of dissolved organic matter in a Mediterranean river
- 2016
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Ingår i: Biogeochemistry. - : Springer Science and Business Media LLC. - 0168-2563 .- 1573-515X. ; 127:1, s. 125-139
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Tidskriftsartikel (refereegranskat)abstract
- The composition of dissolved organic matter (DOM) in rivers results from the different sources and in-stream transformations along the land to ocean aquatic continuum. Riverine DOM sources are highly dependent on the hydrological connection between the river channel and the surrounding terrestrial ecosystems, but how the lack of this connectivity (e.g., during drought episodes) affects the sources and biodegradation of DOM in rivers remains unclear. Here we identified the DOM sources as well as the different DOM pools that are respired along a Mediterranean river during drought by combining absorbance-fluorescence spectroscopy, size-exclusion chromatography, biodegradation assays, and stable and radiocarbon isotopes. DOM composition was highly heterogeneous along the river in response to different sources and in-stream processes in each distinct aquatic environment (i.e., isolated water pools, running waters, and impounded waters in weirs). The reduced hydrological connectivity with terrestrial ecosystems promoted the influence of autochthonous DOM sources. Still, tree leaves from overhanging canopies stood out as an important terrestrial DOM source, especially in sites where water residence time was high such as isolated pools and weirs. Degradation of leaf leachates was a relevant process in these sites, whereas autochthonous DOM and groundwater millennial DOM (> 1300 year B.P.) seemed to be degraded in running waters. Overall, our results highlight that the drought-induced hydrological disconnection entails a great spatial heterogeneity in the sources of DOM, which at the same time determines the different DOM pools that are respired in each environment along the river.
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| 6. |
- Catalan, Nuria, et al.
(författare)
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Carbon dioxide efflux during the flooding phase of temporary ponds
- 2014
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Ingår i: LIMNETICA. - 0213-8409. ; 33:2, s. 349-359
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Tidskriftsartikel (refereegranskat)abstract
- Small water bodies, such as temporary ponds, have a high carbon processing potential. Nevertheless, despite the global occurrence of these systems, the carbon effluxes from such water bodies have been largely overlooked. In this study, we examined the intra- and intersystem variability of carbon dioxide (CO2) effluxes from a set of Mediterranean temporary ponds during the flooding phase, a hot-spot for biogeochemical cycling in temporary systems. The CO2 effluxes showed higher variability among the various sections of each pond (i.e., inundated, emerged-unvegetated and emerged-vegetated) than among the ponds. The emerged-vegetated sections showed the highest CO2 effluxes per unit area and tended to drive the total effluxes at the whole-ecosystem scale. The mean CO2 efflux (121.3 +/- 138.1 mmol m(-2) d(-1)) was in the upper range for freshwater ecosystems. The CO2 effluxes were not related to catchment properties but rather to the organic content of the sediments, especially in the emerged sections of the ponds. Our results indicate that temporary ponds, especially their emerged sections, are important sources of CO2 to the atmosphere, highlighting the need to include the dry phases of these and other temporary aquatic systems in regional carbon budgets.
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| 10. |
- Gómez-Gener, Lluís, et al.
(författare)
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Hot spots for carbon emissions from Mediterranean fluvial networks during summer drought
- 2015
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Ingår i: Biogeochemistry. - : Springer Science and Business Media LLC. - 0168-2563 .- 1573-515X. ; 125:3, s. 409-426
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Tidskriftsartikel (refereegranskat)abstract
- During summer drought, Mediterranean fluvial networks are transformed into highly heterogeneous landscapes characterized by different environments (i.e., running and impounded waters, isolated river pools and dry beds). This hydrological setting defines novel biogeochemically active areas that could potentially increase the rates of carbon emissions from the fluvial network to the atmosphere. Using chamber methods, we aimed to identify hot spots for carbon dioxide (CO2) and methane (CH4) emissions from two typical Mediterranean fluvial networks during summer drought. The CO2 efflux from dry beds (mean ± SE = 209 ± 10 mmol CO2 m−2 d−1) was comparable to that from running waters (120 ± 33 mmol m−2 d−1) and significantly higher than from impounded waters (36.6 ± 8.5 mmol m−2 d−1) and isolated pools (17.2 ± 0.9 mmol m−2 d−1). In contrast, the CH4 efflux did not significantly differ among environments, although the CH4 efflux was notable in some impounded waters (13.9 ± 10.1 mmol CH4 m−2 d−1) and almost negligible in the remaining environments (mean <0.3 mmol m−2 d−1). Diffusion was the only mechanism driving CO2 efflux in all environments and was most likely responsible for CH4 efflux in running waters, isolated pools and dry beds. In contrast, the CH4 efflux in impounded waters was primarily ebullition-based. Using a simple heuristic approach to simulate potential changes in carbon emissions from Mediterranean fluvial networks under future hydrological scenarios, we show that an extreme drying out (i.e., a four-fold increase of the surface area of dry beds) would double the CO2 efflux from the fluvial network. Correspondingly, an extreme transformation of running waters into impounded waters (i.e., a twofold increase of the surface area of impounded waters) would triple the CH4 efflux. Thus, carbon emissions from dry beds and impounded waters should be explicitly considered in carbon assessments of fluvial networks, particularly under predicted global change scenarios, which are expected to increase the spatial and temporal extent of these environments.
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